Wall clock time and date at job start Tue Mar 31 2020 13:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47086 * 2 1 4 4 C 1.52999 * 109.47055 * 119.99793 * 2 1 3 5 5 H 1.08994 * 109.48305 * 60.02713 * 4 2 1 6 6 C 1.53114 * 109.48256 * 179.97438 * 4 2 1 7 7 C 1.53176 * 109.15703 * 177.50341 * 6 4 2 8 8 H 1.08996 * 109.54358 * 63.06207 * 7 6 4 9 9 N 1.46500 * 109.54067 * 183.24258 * 7 6 4 10 10 S 1.65606 * 119.99825 * 214.82147 * 9 7 6 11 11 O 1.42097 * 104.27560 * 308.93171 * 10 9 7 12 12 O 1.42091 * 104.27561 * 181.06907 * 10 9 7 13 13 C 1.81407 * 104.44700 * 64.99932 * 10 9 7 14 14 C 1.52996 * 109.46799 * 180.02562 * 13 10 9 15 15 C 1.52998 * 109.46929 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 C 1.53172 * 109.11062 * 303.15283 * 7 6 4 25 25 C 1.53088 * 109.16669 * 56.93546 * 24 7 6 26 26 O 1.42901 * 109.48471 * 300.00249 * 4 2 1 27 27 H 1.09000 * 109.47369 * 299.99662 * 1 2 3 28 28 H 1.09001 * 109.47671 * 60.00284 * 1 2 3 29 29 H 1.09002 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47596 * 239.99855 * 2 1 3 31 31 H 1.08998 * 109.46897 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46633 * 300.00351 * 3 2 1 33 33 H 1.09000 * 109.46740 * 59.99953 * 3 2 1 34 34 H 1.09001 * 109.45022 * 57.64110 * 6 4 2 35 35 H 1.09002 * 109.59381 * 297.45411 * 6 4 2 36 36 H 0.96998 * 120.00233 * 34.82265 * 9 7 6 37 37 H 1.09000 * 109.46876 * 60.00006 * 13 10 9 38 38 H 1.09002 * 109.47096 * 299.99793 * 13 10 9 39 39 H 1.09000 * 109.47441 * 60.00303 * 14 13 10 40 40 H 1.09002 * 109.47087 * 299.99749 * 14 13 10 41 41 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 42 42 H 1.09006 * 109.47297 * 299.99829 * 15 14 13 43 43 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 44 44 H 1.08999 * 109.52800 * 176.84420 * 24 7 6 45 45 H 1.09008 * 109.52618 * 296.96899 * 24 7 6 46 46 H 1.08999 * 109.47963 * 62.37364 * 25 24 7 47 47 H 1.08998 * 109.48817 * 182.40107 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6771 -1.7490 1.2492 6 6 3.5711 -0.7219 1.2492 7 6 4.0734 -1.3901 2.5327 8 1 3.7530 -2.4318 2.5510 9 7 5.5364 -1.3264 2.5781 10 16 6.3991 -2.5719 3.2467 11 8 5.7935 -2.7758 4.5159 12 8 7.7538 -2.1570 3.1394 13 6 6.0771 -3.9834 2.1537 14 6 6.8281 -5.2115 2.6721 15 6 6.5571 -6.4018 1.7499 16 6 7.2972 -7.6114 2.2602 17 1 7.9009 -7.5382 3.1528 18 6 7.2037 -8.8113 1.5876 19 7 6.4690 -8.9002 0.5004 20 14 8.1218 -10.3103 2.2198 21 1 9.4740 -10.3571 1.6079 22 1 8.2494 -10.2261 3.6968 23 1 7.3715 -11.5395 1.8570 24 6 3.4907 -0.6536 3.7427 25 6 1.9629 -0.6573 3.6455 26 8 1.5637 -0.0478 2.4162 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.9345 0.3048 1.2067 35 1 3.9363 -1.2747 0.3837 36 1 5.9997 -0.5547 2.2165 37 1 6.4180 -3.7474 1.1456 38 1 5.0075 -4.1927 2.1360 39 1 6.4868 -5.4473 3.6801 40 1 7.8977 -5.0024 2.6902 41 1 6.8986 -6.1659 0.7421 42 1 5.4874 -6.6111 1.7314 43 1 5.9926 -8.1217 0.1720 44 1 3.7986 -1.1574 4.6589 45 1 3.8534 0.3744 3.7529 46 1 1.5993 -1.6844 3.6769 47 1 1.5440 -0.0977 4.4818 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330625585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:30 Heat of formation + Delta-G solvation = -183.519769 kcal Electronic energy + Delta-G solvation = -25786.174488 eV Core-core repulsion = 22093.596131 eV Total energy + Delta-G solvation = -3692.578356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82573 -38.28777 -37.18998 -36.92415 -36.80047 -35.96610 -34.26333 -31.93122 -30.99541 -29.34444 -27.98580 -25.53143 -25.47853 -24.58789 -22.83572 -21.80062 -20.88076 -20.30325 -19.14545 -18.61586 -17.80650 -17.28158 -17.12439 -16.78108 -16.25815 -15.86768 -15.68690 -15.55607 -15.37758 -15.23838 -15.20626 -14.63449 -14.10679 -13.94904 -13.70583 -13.51683 -13.29546 -13.22525 -13.21941 -13.11563 -12.90237 -12.68912 -12.62901 -12.56739 -12.53454 -12.28578 -11.97973 -11.94823 -11.88478 -11.70799 -11.55264 -11.49090 -11.10523 -10.74889 -10.57652 -10.50566 -10.39501 -8.72663 -6.43763 -0.83901 1.51603 1.60038 1.66825 1.78327 2.53328 2.65681 2.85530 3.11843 3.13734 3.54316 3.59598 3.70433 3.76762 3.83898 3.98550 4.02228 4.13706 4.21918 4.25986 4.29931 4.45412 4.49377 4.52282 4.74334 4.75794 4.78538 4.81322 4.86051 4.86828 4.93033 5.03577 5.08414 5.11751 5.16093 5.23678 5.25134 5.30998 5.35124 5.48930 5.57208 5.93678 6.03004 6.14624 6.32137 6.54207 7.37081 8.69008 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.002918 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.515569 B = 9592.911828 C =10590.855085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.091 3.909 5 H 0.062 0.938 6 C -0.155 4.155 7 C 0.143 3.857 8 H 0.088 0.912 9 N -1.101 6.101 10 S 2.630 3.370 11 O -0.984 6.984 12 O -0.992 6.992 13 C -0.613 4.613 14 C -0.100 4.100 15 C 0.015 3.985 16 C -0.629 4.629 17 H 0.050 0.950 18 C -0.036 4.036 19 N -0.935 5.935 20 Si 1.117 2.883 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.280 1.280 24 C -0.173 4.173 25 C 0.062 3.938 26 O -0.382 6.382 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.427 0.573 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.000 1.000 42 H 0.001 0.999 43 H 0.258 0.742 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 22.047 -0.011 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.201 4.201 4 C 0.032 3.968 5 H 0.080 0.920 6 C -0.194 4.194 7 C 0.036 3.964 8 H 0.106 0.894 9 N -0.861 5.861 10 S 2.724 3.276 11 O -0.974 6.974 12 O -0.982 6.982 13 C -0.743 4.743 14 C -0.139 4.139 15 C -0.023 4.023 16 C -0.667 4.667 17 H 0.069 0.931 18 C -0.234 4.234 19 N -0.573 5.573 20 Si 0.938 3.062 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.206 1.206 24 C -0.213 4.213 25 C -0.015 4.015 26 O -0.301 6.301 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.263 0.737 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.745 20.561 0.555 23.206 hybrid contribution -0.203 1.298 -0.399 1.373 sum -10.948 21.859 0.155 24.448 Atomic orbital electron populations 1.21751 0.94593 1.01739 1.01974 1.21189 0.96615 0.97187 0.95625 1.21806 1.01111 0.95352 1.01803 1.22238 0.92039 0.96124 0.86358 0.92027 1.22647 0.96461 1.03197 0.97094 1.20999 0.78246 1.00775 0.96392 0.89417 1.55403 1.15234 1.35524 1.79938 1.04246 0.72720 0.75409 0.75185 1.93541 1.77900 1.86338 1.39634 1.93539 1.36180 1.80971 1.87557 1.30545 1.11470 1.15124 1.17206 1.21180 0.99320 0.93338 1.00082 1.19128 0.95574 0.93057 0.94533 1.22585 1.32704 0.97627 1.13811 0.93134 1.27395 0.97011 1.04696 0.94280 1.70895 1.30006 1.33349 1.23008 0.82932 0.75360 0.71989 0.75889 1.19707 1.19553 1.20560 1.22742 0.97216 1.02404 0.98926 1.22626 0.92759 0.98936 0.87204 1.87916 1.74634 1.53974 1.13616 0.92805 0.92021 0.92901 0.89002 0.92164 0.92277 0.92916 0.89063 0.88750 0.73651 0.83425 0.83717 0.91551 0.91690 0.98153 0.98055 0.93238 0.90533 0.90111 0.92582 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.05 71.98 0.65 -1.18 16 2 C -0.09 -1.09 2.81 -10.79 -0.03 -1.12 16 3 C -0.14 -1.73 8.70 71.98 0.63 -1.10 16 4 C 0.09 1.30 2.37 30.63 0.07 1.37 16 5 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.15 -2.05 4.67 30.69 0.14 -1.90 16 7 C 0.14 2.40 2.64 45.11 0.12 2.52 16 8 H 0.09 1.43 7.16 -2.39 -0.02 1.41 16 9 N -1.10 -20.27 5.37 -168.91 -0.91 -21.18 16 10 S 2.63 71.42 5.38 -56.49 -0.30 71.11 16 11 O -0.98 -32.31 17.20 -127.65 -2.20 -34.50 16 12 O -0.99 -33.34 18.08 -127.65 -2.31 -35.65 16 13 C -0.61 -17.45 5.96 71.98 0.43 -17.02 16 14 C -0.10 -4.02 5.16 30.59 0.16 -3.86 16 15 C 0.02 0.77 4.28 29.85 0.13 0.90 16 16 C -0.63 -36.04 9.11 25.60 0.23 -35.80 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 18 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 19 N -0.94 -57.19 13.65 21.45 0.29 -56.90 16 20 Si 1.12 50.25 29.90 68.60 2.05 52.31 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.17 -3.00 5.75 30.68 0.18 -2.83 16 25 C 0.06 0.95 6.84 72.01 0.49 1.45 16 26 O -0.38 -6.39 9.06 -148.98 -1.35 -7.74 16 27 H 0.05 0.80 7.68 -2.39 -0.02 0.78 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.66 6.38 -2.39 -0.02 0.65 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.76 7.68 -2.39 -0.02 0.74 16 34 H 0.09 1.10 6.31 -2.39 -0.02 1.09 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.43 6.14 8.80 -96.74 -0.85 5.29 16 37 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.14 3.51 7.45 -2.39 -0.02 3.49 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 42 H 0.00 0.06 8.01 -2.38 -0.02 0.04 16 43 H 0.26 15.75 7.22 -92.71 -0.67 15.08 16 44 H 0.08 1.58 7.52 -2.39 -0.02 1.56 16 45 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.93 380.43 -0.87 -75.80 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.19 Total: 16.94 kcal Atomic # 6 Polarization: -63.86 SS G_CDS: 3.66 Total: -60.20 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -0.61 Total: -78.07 kcal Atomic # 8 Polarization: -72.03 SS G_CDS: -5.85 Total: -77.89 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.31 kcal Atomic # 16 Polarization: 71.42 SS G_CDS: -0.30 Total: 71.11 kcal Total: -74.93 -0.87 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330625585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.719 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds