Wall clock time and date at job start Tue Mar 31 2020 13:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46844 * 2 1 4 4 C 1.52991 * 109.47177 * 120.00436 * 2 1 3 5 5 H 1.08999 * 109.48875 * 300.02619 * 4 2 1 6 6 C 1.53098 * 109.47826 * 180.02562 * 4 2 1 7 7 C 1.53177 * 109.21356 * 182.37378 * 6 4 2 8 8 H 1.09001 * 109.54414 * 176.87772 * 7 6 4 9 9 N 1.46500 * 109.54545 * 297.14489 * 7 6 4 10 10 S 1.65594 * 119.99850 * 214.99979 * 9 7 6 11 11 O 1.42104 * 104.27862 * 181.07373 * 10 9 7 12 12 O 1.42101 * 104.28053 * 308.92907 * 10 9 7 13 13 C 1.81403 * 104.45283 * 65.00018 * 10 9 7 14 14 C 1.52997 * 109.47420 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47222 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47256 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99547 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00069 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00125 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47000 * 119.99649 * 20 18 16 23 23 H 1.48493 * 109.47056 * 239.99733 * 20 18 16 24 24 C 1.53311 * 108.96735 * 56.95427 * 7 6 4 25 25 C 1.53100 * 109.19441 * 303.05955 * 24 7 6 26 26 O 1.42899 * 109.48189 * 60.06087 * 4 2 1 27 27 H 1.09000 * 109.47160 * 299.99772 * 1 2 3 28 28 H 1.08995 * 109.47540 * 59.99906 * 1 2 3 29 29 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 240.00994 * 2 1 3 31 31 H 1.08995 * 109.47129 * 300.00346 * 3 2 1 32 32 H 1.09000 * 109.46530 * 60.00150 * 3 2 1 33 33 H 1.08995 * 109.46622 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.52244 * 302.31317 * 6 4 2 35 35 H 1.09004 * 109.52508 * 62.43846 * 6 4 2 36 36 H 0.96995 * 119.99662 * 35.00155 * 9 7 6 37 37 H 1.09004 * 109.46859 * 299.99989 * 13 10 9 38 38 H 1.08997 * 109.46580 * 59.99908 * 13 10 9 39 39 H 1.08994 * 109.47246 * 300.00589 * 14 13 10 40 40 H 1.09004 * 109.46794 * 60.00226 * 14 13 10 41 41 H 1.09004 * 109.47074 * 300.00374 * 15 14 13 42 42 H 1.09001 * 109.47135 * 59.99967 * 15 14 13 43 43 H 0.96998 * 119.99700 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.51110 * 183.14032 * 24 7 6 45 45 H 1.08999 * 109.55790 * 62.99958 * 24 7 6 46 46 H 1.09002 * 109.47233 * 297.62202 * 25 24 7 47 47 H 1.09002 * 109.48291 * 177.59299 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6764 -0.2080 2.1393 6 6 3.5710 -0.7208 1.2496 7 6 4.0749 -1.4954 2.4712 8 1 5.1635 -1.5460 2.4473 9 7 3.6408 -0.8171 3.6950 10 16 4.6203 -0.8111 5.0302 11 8 3.8753 -0.0983 6.0081 12 8 4.9610 -2.1773 5.2211 13 6 6.0763 0.1427 4.5193 14 6 7.0681 0.2213 5.6817 15 6 8.2964 1.0252 5.2505 16 6 9.2735 1.1022 6.3952 17 1 9.0418 0.6250 7.3359 18 6 10.4633 1.7816 6.2415 19 7 10.7457 2.3623 5.0957 20 14 11.6742 1.8777 7.6606 21 1 11.1243 1.1474 8.8308 22 1 12.9629 1.2615 7.2543 23 1 11.8985 3.2997 8.0246 24 6 3.4928 -2.9133 2.4371 25 6 1.9648 -2.8291 2.3907 26 8 1.5649 -2.0690 1.2485 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 3.9356 -1.1979 0.3399 35 1 3.9349 0.3057 1.2936 36 1 2.7797 -0.3715 3.7231 37 1 6.5509 -0.3466 3.6687 38 1 5.7697 1.1493 4.2350 39 1 6.5932 0.7107 6.5320 40 1 7.3746 -0.7852 5.9664 41 1 8.7711 0.5354 4.4003 42 1 7.9902 2.0317 4.9654 43 1 11.5829 2.8400 4.9875 44 1 3.8007 -3.4548 3.3315 45 1 3.8558 -3.4356 1.5520 46 1 1.6000 -2.3437 3.2959 47 1 1.5472 -3.8337 2.3232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330625586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:34 Heat of formation + Delta-G solvation = -153.992030 kcal Electronic energy + Delta-G solvation = -25939.445293 eV Core-core repulsion = 22248.147356 eV Total energy + Delta-G solvation = -3691.297937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.23636 -36.96651 -36.08222 -35.75664 -35.37517 -34.71077 -32.21987 -30.97143 -30.33391 -27.85417 -27.42863 -25.03800 -23.93872 -23.75996 -20.87388 -20.69682 -20.37790 -19.04026 -17.65194 -16.75225 -16.71891 -16.39038 -16.22558 -15.74953 -15.33377 -14.82498 -14.52277 -14.46938 -14.31282 -14.17874 -13.56818 -13.40076 -13.12722 -12.66223 -12.56965 -12.35513 -12.31711 -12.03372 -11.98540 -11.85422 -11.81391 -11.67877 -11.51763 -11.39673 -11.29124 -11.11929 -11.00372 -10.95848 -10.86164 -10.44222 -10.42101 -9.99205 -9.84568 -9.60535 -9.34786 -9.10816 -8.43729 -6.08478 -4.11501 0.41617 2.77795 3.27575 3.35218 3.40103 3.47029 3.88188 4.24995 4.32809 4.40251 4.40944 4.55002 4.64619 4.75182 4.81182 4.94116 4.97159 5.00631 5.10242 5.16505 5.22488 5.28354 5.34934 5.40713 5.41560 5.50827 5.58812 5.59735 5.68231 5.77273 5.79178 5.84201 5.89081 5.97279 6.04040 6.05952 6.22522 6.40643 6.80134 6.84034 7.00830 7.53776 7.63268 7.89610 8.29953 8.94972 9.53502 11.02783 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002833 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.401173 B = 9881.637205 C =10606.101195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.151 4.151 4 C 0.095 3.905 5 H 0.058 0.942 6 C -0.160 4.160 7 C 0.151 3.849 8 H 0.092 0.908 9 N -1.121 6.121 10 S 2.598 3.402 11 O -0.964 6.964 12 O -0.959 6.959 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.174 4.174 25 C 0.064 3.936 26 O -0.377 6.377 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.412 0.588 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 -6.381 -12.261 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.209 4.209 4 C 0.037 3.963 5 H 0.075 0.925 6 C -0.199 4.199 7 C 0.044 3.956 8 H 0.110 0.890 9 N -0.879 5.879 10 S 2.694 3.306 11 O -0.954 6.954 12 O -0.949 6.949 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.214 4.214 25 C -0.013 4.013 26 O -0.297 6.297 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.717 -6.883 -11.676 23.926 hybrid contribution 0.973 0.803 0.392 1.321 sum -18.744 -6.080 -11.284 22.708 Atomic orbital electron populations 1.21770 0.94619 1.02361 1.01405 1.21098 0.96547 0.95706 0.97259 1.21909 1.01585 0.95049 1.02312 1.22108 0.92535 0.83458 0.98211 0.92451 1.22596 0.96867 1.02119 0.98302 1.20805 0.99192 0.91634 0.83967 0.88996 1.55919 1.32970 1.69727 1.29285 1.05400 0.76239 0.75713 0.73237 1.93581 1.69347 1.75376 1.57101 1.93569 1.84778 1.32377 1.84208 1.30550 1.17856 1.14787 1.10870 1.21500 0.96951 1.02660 0.93410 1.19063 0.89990 0.94707 0.96999 1.21287 1.02517 1.33754 0.98855 0.92318 1.25022 0.98171 0.95327 0.95878 1.69967 1.24315 1.35161 1.23984 0.86498 0.80999 0.77823 0.82499 1.19594 1.20924 1.20920 1.22725 0.97037 0.97139 1.04464 1.22516 0.93989 0.96266 0.88535 1.87905 1.74629 1.23102 1.44017 0.92902 0.92839 0.91857 0.90402 0.92097 0.92357 0.91930 0.89527 0.89501 0.75381 0.85586 0.85269 0.91582 0.91556 0.96139 0.96129 0.92939 0.88946 0.90007 0.93083 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.05 37.16 0.34 -0.70 16 2 C -0.09 -0.64 2.72 -90.62 -0.25 -0.88 16 3 C -0.15 -0.98 8.84 37.16 0.33 -0.65 16 4 C 0.09 0.78 2.03 -26.69 -0.05 0.72 16 5 H 0.06 0.46 6.70 -51.93 -0.35 0.12 16 6 C -0.16 -1.24 4.67 -26.59 -0.12 -1.36 16 7 C 0.15 1.39 2.93 -67.68 -0.20 1.19 16 8 H 0.09 0.79 7.17 -51.93 -0.37 0.42 16 9 N -1.12 -11.43 4.76 -4.67 -0.02 -11.45 16 10 S 2.60 36.48 5.38 -107.50 -0.58 35.90 16 11 O -0.96 -16.53 18.08 -57.54 -1.04 -17.57 16 12 O -0.96 -15.96 17.14 -57.54 -0.99 -16.94 16 13 C -0.61 -8.99 5.96 37.16 0.22 -8.77 16 14 C -0.11 -2.11 5.16 -26.73 -0.14 -2.24 16 15 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 16 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C -0.17 -1.61 5.83 -26.52 -0.15 -1.77 16 25 C 0.06 0.57 6.68 37.21 0.25 0.82 16 26 O -0.38 -3.61 9.74 -35.23 -0.34 -3.95 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 6.49 -51.93 -0.34 0.06 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.61 6.57 -51.93 -0.34 0.27 16 36 H 0.41 3.63 7.04 -34.47 -0.24 3.39 16 37 H 0.13 1.62 7.45 -51.92 -0.39 1.24 16 38 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.09 0.98 7.46 -51.93 -0.39 0.60 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.46 7.63 -51.93 -0.40 0.07 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -34.27 378.76 -10.13 -44.40 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.25 Total: -0.39 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -0.33 Total: -26.51 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.71 Total: -37.10 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -2.37 Total: -38.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 36.48 SS G_CDS: -0.58 Total: 35.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.27 -10.13 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330625586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.596 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds