Wall clock time and date at job start Tue Mar 31 2020 13:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46844 * 2 1 4 4 C 1.52991 * 109.47177 * 120.00436 * 2 1 3 5 5 H 1.08999 * 109.48875 * 300.02619 * 4 2 1 6 6 C 1.53098 * 109.47826 * 180.02562 * 4 2 1 7 7 C 1.53177 * 109.21356 * 182.37378 * 6 4 2 8 8 H 1.09001 * 109.54414 * 176.87772 * 7 6 4 9 9 N 1.46500 * 109.54545 * 297.14489 * 7 6 4 10 10 S 1.65594 * 119.99850 * 214.99979 * 9 7 6 11 11 O 1.42104 * 104.27862 * 181.07373 * 10 9 7 12 12 O 1.42101 * 104.28053 * 308.92907 * 10 9 7 13 13 C 1.81403 * 104.45283 * 65.00018 * 10 9 7 14 14 C 1.52997 * 109.47420 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47222 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47256 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99547 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00069 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00125 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47000 * 119.99649 * 20 18 16 23 23 H 1.48493 * 109.47056 * 239.99733 * 20 18 16 24 24 C 1.53311 * 108.96735 * 56.95427 * 7 6 4 25 25 C 1.53100 * 109.19441 * 303.05955 * 24 7 6 26 26 O 1.42899 * 109.48189 * 60.06087 * 4 2 1 27 27 H 1.09000 * 109.47160 * 299.99772 * 1 2 3 28 28 H 1.08995 * 109.47540 * 59.99906 * 1 2 3 29 29 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 240.00994 * 2 1 3 31 31 H 1.08995 * 109.47129 * 300.00346 * 3 2 1 32 32 H 1.09000 * 109.46530 * 60.00150 * 3 2 1 33 33 H 1.08995 * 109.46622 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.52244 * 302.31317 * 6 4 2 35 35 H 1.09004 * 109.52508 * 62.43846 * 6 4 2 36 36 H 0.96995 * 119.99662 * 35.00155 * 9 7 6 37 37 H 1.09004 * 109.46859 * 299.99989 * 13 10 9 38 38 H 1.08997 * 109.46580 * 59.99908 * 13 10 9 39 39 H 1.08994 * 109.47246 * 300.00589 * 14 13 10 40 40 H 1.09004 * 109.46794 * 60.00226 * 14 13 10 41 41 H 1.09004 * 109.47074 * 300.00374 * 15 14 13 42 42 H 1.09001 * 109.47135 * 59.99967 * 15 14 13 43 43 H 0.96998 * 119.99700 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.51110 * 183.14032 * 24 7 6 45 45 H 1.08999 * 109.55790 * 62.99958 * 24 7 6 46 46 H 1.09002 * 109.47233 * 297.62202 * 25 24 7 47 47 H 1.09002 * 109.48291 * 177.59299 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6764 -0.2080 2.1393 6 6 3.5710 -0.7208 1.2496 7 6 4.0749 -1.4954 2.4712 8 1 5.1635 -1.5460 2.4473 9 7 3.6408 -0.8171 3.6950 10 16 4.6203 -0.8111 5.0302 11 8 3.8753 -0.0983 6.0081 12 8 4.9610 -2.1773 5.2211 13 6 6.0763 0.1427 4.5193 14 6 7.0681 0.2213 5.6817 15 6 8.2964 1.0252 5.2505 16 6 9.2735 1.1022 6.3952 17 1 9.0418 0.6250 7.3359 18 6 10.4633 1.7816 6.2415 19 7 10.7457 2.3623 5.0957 20 14 11.6742 1.8777 7.6606 21 1 11.1243 1.1474 8.8308 22 1 12.9629 1.2615 7.2543 23 1 11.8985 3.2997 8.0246 24 6 3.4928 -2.9133 2.4371 25 6 1.9648 -2.8291 2.3907 26 8 1.5649 -2.0690 1.2485 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 3.9356 -1.1979 0.3399 35 1 3.9349 0.3057 1.2936 36 1 2.7797 -0.3715 3.7231 37 1 6.5509 -0.3466 3.6687 38 1 5.7697 1.1493 4.2350 39 1 6.5932 0.7107 6.5320 40 1 7.3746 -0.7852 5.9664 41 1 8.7711 0.5354 4.4003 42 1 7.9902 2.0317 4.9654 43 1 11.5829 2.8400 4.9875 44 1 3.8007 -3.4548 3.3315 45 1 3.8558 -3.4356 1.5520 46 1 1.6000 -2.3437 3.2959 47 1 1.5472 -3.8337 2.3232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330625586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:33 Heat of formation + Delta-G solvation = -177.685186 kcal Electronic energy + Delta-G solvation = -25940.472706 eV Core-core repulsion = 22248.147356 eV Total energy + Delta-G solvation = -3692.325350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.91950 -38.20753 -37.08513 -36.73597 -36.47655 -36.05047 -34.17223 -31.78059 -30.97223 -29.66681 -27.96281 -25.78115 -25.56613 -24.59586 -22.47865 -21.40279 -21.21428 -20.07164 -18.74687 -18.56977 -17.47542 -17.38741 -17.14342 -16.91873 -16.52608 -16.42318 -15.68935 -15.45977 -15.08237 -14.92083 -14.52383 -14.28127 -14.17852 -14.07998 -13.74066 -13.51328 -13.25456 -13.18999 -13.10084 -12.99654 -12.92028 -12.77967 -12.76436 -12.61027 -12.51042 -12.18217 -12.11279 -12.03616 -11.77608 -11.74581 -11.59989 -11.36643 -11.09818 -11.06142 -10.58493 -10.52311 -10.23679 -8.23575 -6.34247 -0.75502 1.39014 1.40039 1.52962 1.74799 2.39181 2.73386 2.83355 3.10185 3.21874 3.60448 3.69704 3.74905 3.88276 3.90413 4.01176 4.14938 4.16263 4.32474 4.37788 4.39484 4.41892 4.46820 4.65128 4.78193 4.81911 4.83975 4.87816 4.92365 4.96239 5.05266 5.06079 5.07304 5.14404 5.19489 5.26616 5.31588 5.45114 5.48139 5.50087 5.62594 5.79055 6.01364 6.19297 6.34910 6.81594 7.35221 8.88025 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002833 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.401173 B = 9881.637205 C =10606.101195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.089 3.911 5 H 0.058 0.942 6 C -0.155 4.155 7 C 0.141 3.859 8 H 0.101 0.899 9 N -1.105 6.105 10 S 2.628 3.372 11 O -0.994 6.994 12 O -0.984 6.984 13 C -0.609 4.609 14 C -0.107 4.107 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.059 0.941 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.277 1.277 24 C -0.174 4.174 25 C 0.061 3.939 26 O -0.387 6.387 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.421 0.579 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.004 0.996 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.047 0.953 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.016 -6.411 -12.727 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.207 4.207 4 C 0.032 3.968 5 H 0.076 0.924 6 C -0.194 4.194 7 C 0.035 3.965 8 H 0.119 0.881 9 N -0.866 5.866 10 S 2.723 3.277 11 O -0.984 6.984 12 O -0.974 6.974 13 C -0.740 4.740 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.590 4.590 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.214 4.214 25 C -0.015 4.015 26 O -0.307 6.307 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.258 0.742 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.059 -6.910 -12.137 24.442 hybrid contribution 1.025 0.794 0.464 1.377 sum -19.034 -6.116 -11.673 23.151 Atomic orbital electron populations 1.21753 0.94689 1.01757 1.01817 1.21094 0.96485 0.96096 0.96738 1.21906 1.01776 0.94433 1.02620 1.22239 0.92885 0.82996 0.98715 0.92424 1.22594 0.96485 1.02597 0.97746 1.21069 0.99905 0.91781 0.83775 0.88120 1.55522 1.32596 1.69711 1.28799 1.04312 0.75658 0.74545 0.73169 1.93536 1.69999 1.75871 1.59034 1.93540 1.85237 1.33690 1.84915 1.30505 1.17319 1.16603 1.09575 1.21308 0.96251 1.01661 0.95375 1.18957 0.91616 0.94390 0.95699 1.21768 1.03602 1.33820 0.99787 0.92281 1.25914 1.00130 0.94905 0.98549 1.70070 1.25064 1.35859 1.25907 0.85447 0.78544 0.78086 0.79301 1.18866 1.20201 1.20225 1.22715 0.97311 0.97063 1.04272 1.22565 0.93827 0.96805 0.88331 1.87902 1.74876 1.23739 1.44154 0.92949 0.91996 0.92934 0.90502 0.91502 0.92389 0.91606 0.88621 0.88415 0.74242 0.83521 0.83486 0.91748 0.91535 0.97726 0.97851 0.92627 0.90433 0.88860 0.93442 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.05 71.98 0.65 -1.21 16 2 C -0.09 -1.09 2.72 -10.79 -0.03 -1.12 16 3 C -0.15 -1.64 8.84 71.98 0.64 -1.00 16 4 C 0.09 1.30 2.03 30.62 0.06 1.36 16 5 H 0.06 0.83 6.70 -2.39 -0.02 0.81 16 6 C -0.16 -2.05 4.67 30.69 0.14 -1.91 16 7 C 0.14 2.32 2.93 45.15 0.13 2.45 16 8 H 0.10 1.50 7.17 -2.39 -0.02 1.48 16 9 N -1.10 -20.69 4.76 -168.70 -0.80 -21.49 16 10 S 2.63 70.84 5.38 -56.49 -0.30 70.53 16 11 O -0.99 -33.28 18.08 -127.65 -2.31 -35.59 16 12 O -0.98 -31.89 17.14 -127.65 -2.19 -34.08 16 13 C -0.61 -17.20 5.96 71.98 0.43 -16.77 16 14 C -0.11 -4.23 5.16 30.59 0.16 -4.07 16 15 C 0.03 1.60 4.97 29.85 0.15 1.75 16 16 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 20 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.17 -2.97 5.83 30.73 0.18 -2.79 16 25 C 0.06 1.02 6.68 72.02 0.48 1.50 16 26 O -0.39 -6.83 9.74 -148.98 -1.45 -8.28 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.79 7.68 -2.39 -0.02 0.77 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.68 6.49 -2.39 -0.02 0.66 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.10 6.57 -2.38 -0.02 1.09 16 36 H 0.42 6.69 7.04 -96.75 -0.68 6.01 16 37 H 0.15 3.51 7.45 -2.39 -0.02 3.49 16 38 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.08 1.58 7.46 -2.39 -0.02 1.56 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 0.81 7.63 -2.39 -0.02 0.79 16 47 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.78 378.76 -0.80 -73.58 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.26 Total: 16.28 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.69 Total: -52.04 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -0.52 Total: -76.31 kcal Atomic # 8 Polarization: -72.01 SS G_CDS: -5.95 Total: -77.95 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 70.84 SS G_CDS: -0.30 Total: 70.53 kcal Total: -72.78 -0.80 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330625586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.106 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds