Wall clock time and date at job start Tue Mar 31 2020 12:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09002 * 109.51573 * 180.10070 * 5 2 1 7 7 C 1.53301 * 109.51544 * 300.26033 * 5 2 1 8 8 N 1.47151 * 108.38466 * 172.22471 * 7 5 2 9 9 S 1.65603 * 120.98143 * 129.48470 * 8 7 5 10 10 O 1.42105 * 104.27606 * 26.04584 * 9 8 7 11 11 O 1.42101 * 104.27570 * 153.90037 * 9 8 7 12 12 C 1.81396 * 104.44743 * 269.97294 * 9 8 7 13 13 C 1.53002 * 109.46687 * 180.02562 * 12 9 8 14 14 C 1.53007 * 109.46868 * 180.02562 * 13 12 9 15 15 C 1.50695 * 109.47021 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00181 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00003 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00062 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47179 * 59.99655 * 19 17 15 21 21 H 1.48499 * 109.47093 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47008 * 300.00133 * 19 17 15 23 23 C 1.47146 * 118.03333 * 309.45594 * 8 7 5 24 24 C 1.53301 * 108.38647 * 50.54365 * 23 8 7 25 25 O 1.42961 * 109.21598 * 307.69586 * 24 23 8 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09000 * 109.67523 * 291.94796 * 7 5 2 36 36 H 1.08995 * 109.68034 * 52.49461 * 7 5 2 37 37 H 1.08995 * 109.47104 * 299.99720 * 12 9 8 38 38 H 1.09001 * 109.47365 * 60.00410 * 12 9 8 39 39 H 1.09003 * 109.47258 * 299.99455 * 13 12 9 40 40 H 1.08996 * 109.47278 * 59.99898 * 13 12 9 41 41 H 1.09003 * 109.46544 * 299.99656 * 14 13 12 42 42 H 1.08996 * 109.47447 * 59.99765 * 14 13 12 43 43 H 0.97000 * 119.99876 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.68741 * 290.81333 * 23 8 7 45 45 H 1.09003 * 109.67838 * 170.26109 * 23 8 7 46 46 H 1.08993 * 109.50965 * 187.77148 * 24 23 8 47 47 H 1.08998 * 109.51172 * 67.61258 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7232 -1.2490 7 6 1.5242 -2.1649 -1.2535 8 7 1.8686 -2.7769 -2.5466 9 16 2.6320 -4.2447 -2.6187 10 8 2.2617 -4.8921 -1.4091 11 8 2.2512 -4.7762 -3.8804 12 6 4.3994 -3.8366 -2.6071 13 6 5.2208 -5.1258 -2.6717 14 6 6.7117 -4.7817 -2.6613 15 6 7.5207 -6.0514 -2.7256 16 1 7.0216 -7.0082 -2.7690 17 6 8.8982 -5.9917 -2.7289 18 7 9.5060 -4.8267 -2.6754 19 14 9.9012 -7.5657 -2.8078 20 1 9.5709 -8.3011 -4.0549 21 1 11.3481 -7.2317 -2.7978 22 1 9.5817 -8.4157 -1.6327 23 6 1.5139 -2.0464 -3.7737 24 6 2.0302 -0.6086 -3.6468 25 8 1.5640 -0.0480 -2.4171 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 1.9946 -2.7250 -0.4453 36 1 0.4423 -2.1685 -1.1220 37 1 4.6340 -3.2132 -3.4698 38 1 4.6417 -3.2965 -1.6918 39 1 4.9864 -5.7497 -1.8092 40 1 4.9785 -5.6656 -3.5871 41 1 6.9464 -4.1577 -3.5236 42 1 6.9537 -4.2422 -1.7457 43 1 10.4751 -4.7847 -2.6774 44 1 0.4309 -2.0382 -3.8961 45 1 1.9775 -2.5282 -4.6347 46 1 1.6598 -0.0138 -4.4817 47 1 3.1201 -0.6110 -3.6557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331318381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:12 Heat of formation + Delta-G solvation = -161.011534 kcal Electronic energy + Delta-G solvation = -26431.463260 eV Core-core repulsion = 22739.860934 eV Total energy + Delta-G solvation = -3691.602326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86603 -38.36597 -37.40882 -37.14609 -36.51095 -35.79491 -34.19500 -31.54930 -29.70034 -28.57511 -28.14085 -27.42730 -25.66111 -25.23984 -22.93122 -22.10526 -20.08813 -19.80726 -18.88385 -18.59562 -17.68179 -17.30562 -17.16215 -16.54826 -16.35711 -16.30506 -15.97786 -15.63619 -15.16770 -14.65300 -14.56125 -14.50534 -14.26951 -14.13100 -13.60902 -13.55179 -13.31029 -13.28256 -13.06511 -13.04912 -13.01691 -12.75459 -12.68803 -12.68071 -12.64972 -12.30840 -12.20657 -11.97053 -11.79232 -11.65838 -11.53805 -11.51564 -11.36306 -11.14085 -10.88070 -10.58806 -9.78228 -8.24215 -6.35536 -0.88206 1.39438 1.41832 1.49792 1.51987 2.38586 2.70790 2.74850 3.01298 3.09349 3.50217 3.64097 3.77239 3.79631 3.86044 3.98543 4.08865 4.18774 4.27211 4.32799 4.34380 4.44159 4.54684 4.58606 4.67893 4.76639 4.83072 4.87641 4.89160 4.96560 4.99203 5.01683 5.05150 5.11603 5.14138 5.21858 5.32101 5.42414 5.44263 5.53954 5.55446 5.59548 5.76867 6.17360 6.22265 6.79607 7.33916 8.87014 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.003239 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.076180 B = 8641.756652 C = 9266.988849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.152 4.152 5 C 0.085 3.915 6 H 0.063 0.937 7 C 0.084 3.916 8 N -1.002 6.002 9 S 2.621 3.379 10 O -0.983 6.983 11 O -0.982 6.982 12 C -0.608 4.608 13 C -0.105 4.105 14 C 0.033 3.967 15 C -0.555 4.555 16 H 0.060 0.940 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.080 3.920 24 C 0.045 3.955 25 O -0.375 6.375 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.130 0.870 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.826 13.903 3.293 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.209 4.209 5 C 0.026 3.974 6 H 0.081 0.919 7 C -0.041 4.041 8 N -0.840 5.840 9 S 2.718 3.282 10 O -0.973 6.973 11 O -0.972 6.972 12 C -0.739 4.739 13 C -0.145 4.145 14 C -0.005 4.005 15 C -0.593 4.593 16 H 0.078 0.922 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.045 4.045 24 C -0.033 4.033 25 O -0.294 6.294 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.121 0.879 46 H 0.148 0.852 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.258 13.291 3.259 23.625 hybrid contribution 1.577 -0.560 -0.144 1.679 sum -17.681 12.731 3.115 22.009 Atomic orbital electron populations 1.21867 0.93363 1.02012 1.02318 1.20561 0.97016 0.96153 0.92231 1.21763 1.00626 0.94462 1.02271 1.22012 1.01490 1.00664 0.96758 1.22563 0.97809 0.90336 0.86699 0.91920 1.22457 1.02976 0.94735 0.83965 1.57768 1.73779 1.39574 1.12912 1.04633 0.77214 0.73353 0.73033 1.93523 1.82171 1.73461 1.48186 1.93526 1.81914 1.77316 1.44479 1.30563 1.22292 1.08171 1.12873 1.21318 0.97389 0.93701 1.02053 1.18942 0.89849 0.95846 0.95909 1.21709 0.92290 0.94096 1.51205 0.92165 1.25926 0.99255 0.99744 0.94504 1.70058 1.09663 1.26013 1.51135 0.85541 0.77280 0.79289 0.79230 1.19213 1.20578 1.19219 1.22341 1.02842 0.93578 0.85723 1.23145 0.99335 0.93073 0.87762 1.87920 1.73034 1.54897 1.13505 0.92369 0.91627 0.92505 0.91589 0.93075 0.92409 0.92105 0.92352 0.90591 0.88366 0.89131 0.83736 0.83982 0.91578 0.91510 0.97858 0.97893 0.92589 0.89364 0.87878 0.85190 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.99 71.98 0.58 -1.35 16 2 C -0.06 -0.89 0.63 -52.18 -0.03 -0.92 16 3 C -0.13 -1.92 8.33 71.98 0.60 -1.32 16 4 C -0.15 -2.15 8.14 71.98 0.59 -1.57 16 5 C 0.09 1.53 2.04 30.69 0.06 1.59 16 6 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 7 C 0.08 1.67 5.01 86.36 0.43 2.10 16 8 N -1.00 -22.36 3.27 -511.62 -1.67 -24.03 16 9 S 2.62 76.74 5.42 -56.49 -0.31 76.43 16 10 O -0.98 -33.99 16.81 -127.65 -2.15 -36.14 16 11 O -0.98 -33.69 16.81 -127.65 -2.15 -35.84 16 12 C -0.61 -18.32 6.18 71.98 0.44 -17.87 16 13 C -0.11 -4.27 5.16 30.60 0.16 -4.12 16 14 C 0.03 1.68 4.97 29.85 0.15 1.83 16 15 C -0.56 -31.49 9.11 25.60 0.23 -31.25 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 19 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.08 1.43 6.50 86.36 0.56 1.99 16 24 C 0.04 0.68 6.99 72.08 0.50 1.18 16 25 O -0.38 -6.77 9.04 -148.98 -1.35 -8.12 16 26 H 0.06 0.89 7.68 -2.39 -0.02 0.87 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.79 6.27 -2.38 -0.01 0.78 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.90 7.68 -2.39 -0.02 0.89 16 32 H 0.06 0.88 6.63 -2.39 -0.02 0.87 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.99 5.99 -2.39 -0.01 1.98 16 36 H 0.09 1.68 6.08 -2.39 -0.01 1.67 16 37 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.79 7.23 -2.39 -0.02 1.77 16 46 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.09 377.75 0.35 -71.74 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.92 Total: 14.11 kcal Atomic # 6 Polarization: -53.73 SS G_CDS: 4.73 Total: -49.00 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.39 Total: -79.17 kcal Atomic # 8 Polarization: -74.45 SS G_CDS: -5.64 Total: -80.09 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 76.74 SS G_CDS: -0.31 Total: 76.43 kcal Total: -72.09 0.35 -71.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331318381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.271 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds