Wall clock time and date at job start Tue Mar 31 2020 12:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47547 * 2 1 4 4 C 1.53005 * 109.46992 * 240.00130 * 2 1 3 5 5 C 1.52999 * 109.47218 * 120.00585 * 2 1 3 6 6 H 1.09001 * 109.55185 * 180.12673 * 5 2 1 7 7 C 1.53291 * 109.51695 * 59.99738 * 5 2 1 8 8 N 1.47147 * 108.38820 * 187.77524 * 7 5 2 9 9 S 1.65600 * 120.98386 * 230.51377 * 8 7 5 10 10 O 1.42098 * 104.27576 * 333.92752 * 9 8 7 11 11 O 1.42102 * 104.27841 * 206.06879 * 9 8 7 12 12 C 1.81400 * 104.45288 * 89.99890 * 9 8 7 13 13 C 1.52992 * 109.47583 * 180.02562 * 12 9 8 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.47149 * 118.03722 * 50.78532 * 8 7 5 24 24 C 1.53716 * 108.15924 * 309.16026 * 23 8 7 25 25 O 1.42960 * 109.14781 * 52.53711 * 24 23 8 26 26 H 1.08999 * 109.46707 * 299.99721 * 1 2 3 27 27 H 1.08996 * 109.47274 * 59.99591 * 1 2 3 28 28 H 1.09002 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47663 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47093 * 300.00951 * 3 2 1 31 31 H 1.09004 * 109.46822 * 59.99902 * 3 2 1 32 32 H 1.09002 * 109.47397 * 299.99900 * 4 2 1 33 33 H 1.08996 * 109.46883 * 60.00040 * 4 2 1 34 34 H 1.09001 * 109.47317 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.68188 * 68.04947 * 7 5 2 36 36 H 1.09001 * 109.71455 * 307.51935 * 7 5 2 37 37 H 1.09002 * 109.47172 * 59.99879 * 12 9 8 38 38 H 1.09001 * 109.46713 * 300.00132 * 12 9 8 39 39 H 1.09002 * 109.47103 * 59.99669 * 13 12 9 40 40 H 1.08998 * 109.46862 * 300.00481 * 13 12 9 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 43 43 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.68036 * 68.93328 * 23 8 7 45 45 H 1.09000 * 109.68659 * 189.49521 * 23 8 7 46 46 H 1.09000 * 109.65691 * 292.56839 * 24 23 8 47 47 H 1.09006 * 109.48254 * 172.39454 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 3.1300 -0.7202 1.2516 7 6 1.5295 -2.1668 1.2501 8 7 1.8733 -2.7796 2.5430 9 16 2.6419 -4.2447 2.6144 10 8 2.2761 -4.8917 1.4033 11 8 2.2609 -4.7793 3.8747 12 6 4.4079 -3.8304 2.6064 13 6 5.2339 -5.1167 2.6694 14 6 6.7234 -4.7672 2.6620 15 6 7.5370 -6.0342 2.7247 16 1 7.0412 -6.9928 2.7653 17 6 8.9143 -5.9696 2.7292 18 7 9.5179 -4.8023 2.6792 19 14 9.9226 -7.5401 2.8061 20 1 9.0114 -8.7117 2.8540 21 1 10.7857 -7.6337 1.6012 22 1 10.7726 -7.5235 4.0238 23 6 1.5086 -2.0550 3.7706 24 6 2.0249 -0.6125 3.6468 25 8 1.5591 -0.0516 2.4171 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7209 -1.2496 35 1 2.0036 -2.7241 0.4421 36 1 0.4478 -2.1748 1.1161 37 1 4.6389 -3.2072 3.4704 38 1 4.6497 -3.2882 1.6923 39 1 5.0029 -5.7395 1.8052 40 1 4.9921 -5.6593 3.5832 41 1 6.9548 -4.1442 3.5260 42 1 6.9648 -4.2248 1.7479 43 1 10.4869 -4.7568 2.6827 44 1 0.4248 -2.0513 3.8864 45 1 1.9688 -2.5381 4.6326 46 1 3.1148 -0.6109 3.6580 47 1 1.6513 -0.0197 4.4819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331318383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:17 Heat of formation + Delta-G solvation = -138.357388 kcal Electronic energy + Delta-G solvation = -26429.934719 eV Core-core repulsion = 22739.314750 eV Total energy + Delta-G solvation = -3690.619968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10761 -37.09565 -36.65945 -35.84274 -34.94599 -34.70224 -32.22204 -30.77797 -27.90491 -27.82049 -27.52961 -26.66737 -24.48284 -23.78932 -21.90827 -20.52633 -19.23495 -18.85577 -17.77160 -16.75739 -16.69030 -16.22590 -15.84857 -15.60889 -15.33836 -15.08924 -14.51218 -14.28577 -14.25297 -13.98625 -13.89121 -13.54751 -12.69013 -12.66271 -12.45710 -12.33697 -12.23475 -12.12111 -12.03320 -11.96971 -11.83841 -11.80773 -11.54199 -11.32015 -11.28742 -11.02093 -10.96172 -10.88486 -10.88000 -10.59611 -10.43061 -10.28399 -10.00020 -9.44696 -9.19369 -8.85949 -8.44092 -6.08713 -4.11839 0.34178 2.60436 3.27402 3.35041 3.39952 3.43726 3.93534 4.13733 4.38940 4.41962 4.45006 4.49597 4.68113 4.75328 4.93201 4.97436 5.03000 5.07927 5.14105 5.19824 5.23047 5.27913 5.34499 5.41824 5.46262 5.55148 5.61619 5.68129 5.72064 5.76744 5.80724 5.84183 5.85615 5.96522 6.14046 6.17944 6.19342 6.34372 6.39422 6.82475 6.94262 7.53243 7.62584 7.89208 8.29471 8.94552 9.53148 11.02516 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.003240 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.835938 B = 8640.358473 C = 9266.928559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.151 4.151 5 C 0.085 3.915 6 H 0.066 0.934 7 C 0.089 3.911 8 N -1.008 6.008 9 S 2.596 3.404 10 O -0.957 6.957 11 O -0.958 6.958 12 C -0.608 4.608 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.088 3.912 24 C 0.046 3.954 25 O -0.369 6.369 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.169 13.450 -3.210 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.195 4.195 4 C -0.208 4.208 5 C 0.026 3.974 6 H 0.084 0.916 7 C -0.036 4.036 8 N -0.845 5.845 9 S 2.693 3.307 10 O -0.948 6.948 11 O -0.948 6.948 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.038 4.038 24 C -0.032 4.032 25 O -0.287 6.287 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.603 12.836 -3.181 22.824 hybrid contribution 1.412 -0.494 0.110 1.500 sum -17.191 12.342 -3.071 21.384 Atomic orbital electron populations 1.21895 0.93844 1.02021 1.02107 1.20534 0.96648 0.96068 0.92724 1.21799 1.00880 0.94722 1.02064 1.21994 1.01664 1.00675 0.96485 1.22526 0.97943 0.90904 0.86022 0.91583 1.22263 1.02419 0.94178 0.84736 1.58040 1.74328 1.40594 1.11515 1.05576 0.77787 0.73036 0.74259 1.93561 1.82007 1.72120 1.47089 1.93563 1.81649 1.76054 1.43531 1.30609 1.22164 1.10173 1.11089 1.21507 0.99754 0.91286 1.01945 1.19063 0.86695 0.97260 0.97715 1.21287 0.91310 0.92964 1.50884 0.92306 1.25021 0.98023 0.96263 0.95070 1.69965 1.09220 1.23623 1.50590 0.86498 0.80169 0.83500 0.77658 1.19580 1.20916 1.20918 1.22164 1.01949 0.93078 0.86598 1.23072 0.99118 0.93585 0.87419 1.87916 1.72706 1.54986 1.13138 0.91710 0.92711 0.92416 0.92714 0.92662 0.91775 0.91866 0.91749 0.92023 0.88246 0.89935 0.85512 0.85556 0.91571 0.91572 0.96135 0.96131 0.92932 0.90333 0.88234 0.92368 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 7.99 37.16 0.30 -0.81 16 2 C -0.06 -0.49 0.63 -154.51 -0.10 -0.59 16 3 C -0.14 -1.09 8.33 37.16 0.31 -0.78 16 4 C -0.15 -1.17 8.13 37.16 0.30 -0.87 16 5 C 0.09 0.82 2.04 -26.58 -0.05 0.77 16 6 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 7 C 0.09 0.95 5.00 -3.54 -0.02 0.93 16 8 N -1.01 -11.91 3.27 -112.83 -0.37 -12.28 16 9 S 2.60 39.01 5.42 -107.50 -0.58 38.42 16 10 O -0.96 -16.80 16.81 -57.54 -0.97 -17.77 16 11 O -0.96 -16.78 16.80 -57.54 -0.97 -17.74 16 12 C -0.61 -9.35 6.18 37.15 0.23 -9.12 16 13 C -0.11 -2.13 5.16 -26.74 -0.14 -2.27 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.09 0.86 6.53 -3.32 -0.02 0.84 16 24 C 0.05 0.40 7.00 37.53 0.26 0.66 16 25 O -0.37 -3.67 9.04 -35.23 -0.32 -3.98 16 26 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.45 6.28 -51.93 -0.33 0.12 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 32 H 0.06 0.49 6.62 -51.93 -0.34 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.05 5.99 -51.93 -0.31 0.74 16 36 H 0.08 0.83 6.09 -51.93 -0.32 0.51 16 37 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.95 7.22 -51.93 -0.37 0.57 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -34.04 377.77 -9.63 -43.66 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.35 Total: -2.67 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 0.52 Total: -24.11 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.37 Total: -37.96 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.25 Total: -39.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 39.01 SS G_CDS: -0.58 Total: 38.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.04 -9.63 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331318383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.695 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds