Wall clock time and date at job start Tue Mar 31 2020 12:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47547 * 2 1 4 4 C 1.53005 * 109.46992 * 240.00130 * 2 1 3 5 5 C 1.52999 * 109.47218 * 120.00585 * 2 1 3 6 6 H 1.09001 * 109.55185 * 180.12673 * 5 2 1 7 7 C 1.53291 * 109.51695 * 59.99738 * 5 2 1 8 8 N 1.47147 * 108.38820 * 187.77524 * 7 5 2 9 9 S 1.65600 * 120.98386 * 230.51377 * 8 7 5 10 10 O 1.42098 * 104.27576 * 333.92752 * 9 8 7 11 11 O 1.42102 * 104.27841 * 206.06879 * 9 8 7 12 12 C 1.81400 * 104.45288 * 89.99890 * 9 8 7 13 13 C 1.52992 * 109.47583 * 180.02562 * 12 9 8 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.47149 * 118.03722 * 50.78532 * 8 7 5 24 24 C 1.53716 * 108.15924 * 309.16026 * 23 8 7 25 25 O 1.42960 * 109.14781 * 52.53711 * 24 23 8 26 26 H 1.08999 * 109.46707 * 299.99721 * 1 2 3 27 27 H 1.08996 * 109.47274 * 59.99591 * 1 2 3 28 28 H 1.09002 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47663 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47093 * 300.00951 * 3 2 1 31 31 H 1.09004 * 109.46822 * 59.99902 * 3 2 1 32 32 H 1.09002 * 109.47397 * 299.99900 * 4 2 1 33 33 H 1.08996 * 109.46883 * 60.00040 * 4 2 1 34 34 H 1.09001 * 109.47317 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.68188 * 68.04947 * 7 5 2 36 36 H 1.09001 * 109.71455 * 307.51935 * 7 5 2 37 37 H 1.09002 * 109.47172 * 59.99879 * 12 9 8 38 38 H 1.09001 * 109.46713 * 300.00132 * 12 9 8 39 39 H 1.09002 * 109.47103 * 59.99669 * 13 12 9 40 40 H 1.08998 * 109.46862 * 300.00481 * 13 12 9 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 43 43 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.68036 * 68.93328 * 23 8 7 45 45 H 1.09000 * 109.68659 * 189.49521 * 23 8 7 46 46 H 1.09000 * 109.65691 * 292.56839 * 24 23 8 47 47 H 1.09006 * 109.48254 * 172.39454 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 3.1300 -0.7202 1.2516 7 6 1.5295 -2.1668 1.2501 8 7 1.8733 -2.7796 2.5430 9 16 2.6419 -4.2447 2.6144 10 8 2.2761 -4.8917 1.4033 11 8 2.2609 -4.7793 3.8747 12 6 4.4079 -3.8304 2.6064 13 6 5.2339 -5.1167 2.6694 14 6 6.7234 -4.7672 2.6620 15 6 7.5370 -6.0342 2.7247 16 1 7.0412 -6.9928 2.7653 17 6 8.9143 -5.9696 2.7292 18 7 9.5179 -4.8023 2.6792 19 14 9.9226 -7.5401 2.8061 20 1 9.0114 -8.7117 2.8540 21 1 10.7857 -7.6337 1.6012 22 1 10.7726 -7.5235 4.0238 23 6 1.5086 -2.0550 3.7706 24 6 2.0249 -0.6125 3.6468 25 8 1.5591 -0.0516 2.4171 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7209 -1.2496 35 1 2.0036 -2.7241 0.4421 36 1 0.4478 -2.1748 1.1161 37 1 4.6389 -3.2072 3.4704 38 1 4.6497 -3.2882 1.6923 39 1 5.0029 -5.7395 1.8052 40 1 4.9921 -5.6593 3.5832 41 1 6.9548 -4.1442 3.5260 42 1 6.9648 -4.2248 1.7479 43 1 10.4869 -4.7568 2.6827 44 1 0.4248 -2.0513 3.8864 45 1 1.9688 -2.5381 4.6326 46 1 3.1148 -0.6109 3.6580 47 1 1.6513 -0.0197 4.4819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331318383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:16 Heat of formation + Delta-G solvation = -161.129680 kcal Electronic energy + Delta-G solvation = -26430.922199 eV Core-core repulsion = 22739.314750 eV Total energy + Delta-G solvation = -3691.607449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85795 -38.36598 -37.40141 -37.14604 -36.51264 -35.79557 -34.19600 -31.52744 -29.70171 -28.56795 -28.13978 -27.42048 -25.66428 -25.24248 -22.93639 -22.10794 -20.08799 -19.80673 -18.88359 -18.60068 -17.67634 -17.30844 -17.16159 -16.54275 -16.35328 -16.30564 -15.97298 -15.63362 -15.16497 -14.65102 -14.56246 -14.52096 -14.26651 -14.12300 -13.60963 -13.55381 -13.30941 -13.28340 -13.06673 -13.05096 -13.02247 -12.79768 -12.68156 -12.65084 -12.64275 -12.30853 -12.19982 -11.96845 -11.79959 -11.65771 -11.54178 -11.51695 -11.33498 -11.14077 -10.87914 -10.59916 -9.77941 -8.24622 -6.35679 -0.88162 1.38631 1.39499 1.51921 1.52859 2.38414 2.70791 2.75035 3.01366 3.09109 3.50243 3.64114 3.77156 3.79508 3.86062 3.98222 4.08928 4.18807 4.27392 4.32782 4.34340 4.44291 4.54769 4.58605 4.68039 4.76681 4.83040 4.87673 4.89185 4.96646 4.99253 5.01706 5.05220 5.11647 5.14203 5.21826 5.32130 5.42773 5.44297 5.53955 5.55479 5.59489 5.76974 6.17311 6.22388 6.79852 7.33885 8.87013 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.003240 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.835938 B = 8640.358473 C = 9266.928559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.152 4.152 5 C 0.086 3.914 6 H 0.063 0.937 7 C 0.084 3.916 8 N -1.002 6.002 9 S 2.620 3.380 10 O -0.983 6.983 11 O -0.982 6.982 12 C -0.608 4.608 13 C -0.105 4.105 14 C 0.032 3.968 15 C -0.552 4.552 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.080 3.920 24 C 0.045 3.955 25 O -0.375 6.375 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.059 0.941 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.889 13.854 -3.298 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.209 4.209 5 C 0.026 3.974 6 H 0.081 0.919 7 C -0.041 4.041 8 N -0.841 5.841 9 S 2.718 3.282 10 O -0.974 6.974 11 O -0.972 6.972 12 C -0.739 4.739 13 C -0.145 4.145 14 C -0.006 4.006 15 C -0.590 4.590 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.045 4.045 24 C -0.033 4.033 25 O -0.294 6.294 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.078 0.922 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.324 13.236 -3.266 23.649 hybrid contribution 1.591 -0.545 0.143 1.688 sum -17.733 12.691 -3.124 22.029 Atomic orbital electron populations 1.21863 0.93361 1.02009 1.02314 1.20560 0.97019 0.96147 0.92232 1.21765 1.00627 0.94463 1.02272 1.22013 1.01493 1.00666 0.96756 1.22559 0.97783 0.90350 0.86697 0.91920 1.22454 1.02990 0.94715 0.83966 1.57766 1.73496 1.39883 1.12915 1.04632 0.77217 0.73364 0.73029 1.93522 1.82276 1.73475 1.48085 1.93526 1.81915 1.77221 1.44587 1.30560 1.22226 1.08214 1.12879 1.21314 0.97356 0.93736 1.02054 1.18953 0.89860 0.95865 0.95932 1.21757 0.92264 0.94067 1.50946 0.92200 1.25926 0.99313 0.99703 0.94548 1.70072 1.09726 1.25788 1.51306 0.85430 0.78483 0.79419 0.77942 1.18797 1.20191 1.20189 1.22426 1.02732 0.93608 0.85701 1.23220 0.99342 0.93019 0.87729 1.87919 1.72828 1.55105 1.13503 0.92361 0.91639 0.92513 0.93070 0.91587 0.92413 0.92096 0.90601 0.92349 0.88371 0.89148 0.83726 0.83983 0.91584 0.91521 0.97831 0.97871 0.92606 0.89344 0.87875 0.92232 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.99 71.98 0.58 -1.35 16 2 C -0.06 -0.89 0.63 -52.18 -0.03 -0.92 16 3 C -0.13 -1.92 8.33 71.98 0.60 -1.32 16 4 C -0.15 -2.15 8.13 71.98 0.59 -1.57 16 5 C 0.09 1.53 2.04 30.69 0.06 1.59 16 6 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 7 C 0.08 1.67 5.00 86.35 0.43 2.10 16 8 N -1.00 -22.35 3.27 -510.88 -1.67 -24.02 16 9 S 2.62 76.73 5.42 -56.49 -0.31 76.42 16 10 O -0.98 -34.00 16.81 -127.65 -2.15 -36.15 16 11 O -0.98 -33.69 16.80 -127.65 -2.14 -35.83 16 12 C -0.61 -18.30 6.18 71.98 0.44 -17.86 16 13 C -0.11 -4.27 5.16 30.59 0.16 -4.11 16 14 C 0.03 1.65 4.97 29.85 0.15 1.80 16 15 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 17 C 0.00 0.19 5.46 84.66 0.46 0.66 16 18 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 19 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 C 0.08 1.44 6.53 86.50 0.56 2.00 16 24 C 0.04 0.68 7.00 72.22 0.51 1.19 16 25 O -0.38 -6.77 9.04 -148.98 -1.35 -8.12 16 26 H 0.06 0.89 7.68 -2.39 -0.02 0.87 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.79 6.28 -2.39 -0.01 0.78 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.90 7.69 -2.38 -0.02 0.88 16 32 H 0.06 0.88 6.62 -2.39 -0.02 0.87 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 1.99 5.99 -2.39 -0.01 1.98 16 36 H 0.09 1.68 6.09 -2.39 -0.01 1.67 16 37 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.79 7.22 -2.39 -0.02 1.77 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.13 1.32 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -72.12 377.77 0.36 -71.76 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.92 Total: 13.87 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 4.74 Total: -48.88 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.38 Total: -79.09 kcal Atomic # 8 Polarization: -74.46 SS G_CDS: -5.64 Total: -80.10 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 76.73 SS G_CDS: -0.31 Total: 76.42 kcal Total: -72.12 0.36 -71.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331318383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.369 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds