Wall clock time and date at job start Tue Mar 31 2020 13:15:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46974 * 2 1
4 4 O 1.42899 * 109.47339 * 240.00277 * 2 1 3
5 5 C 1.52995 * 109.47150 * 119.99980 * 2 1 3
6 6 N 1.46501 * 109.47537 * 180.63460 * 5 2 1
7 7 C 1.46494 * 119.99948 * 275.82379 * 6 5 2
8 8 C 1.53005 * 117.49967 * 1.65403 * 7 6 5
9 9 C 1.53002 * 117.49719 * 292.99532 * 7 6 5
10 10 S 1.65602 * 120.00016 * 95.81734 * 6 5 2
11 11 O 1.42096 * 104.27927 * 206.07739 * 10 6 5
12 12 O 1.42109 * 104.27768 * 333.93182 * 10 6 5
13 13 C 1.81396 * 104.44885 * 90.00232 * 10 6 5
14 14 C 1.52997 * 109.47277 * 180.02562 * 13 10 6
15 15 C 1.53005 * 109.47044 * 299.99997 * 14 13 10
16 16 C 1.53000 * 109.47024 * 60.00138 * 14 13 10
17 17 C 1.50698 * 109.47231 * 180.02562 * 14 13 10
18 18 H 1.07997 * 119.99998 * 359.97438 * 17 14 13
19 19 C 1.37885 * 119.99955 * 179.97438 * 17 14 13
20 20 N 1.31517 * 120.00040 * 0.02562 * 19 17 14
21 21 Si 1.86799 * 119.99982 * 179.97438 * 19 17 14
22 22 H 1.48505 * 109.46948 * 0.02562 * 21 19 17
23 23 H 1.48505 * 109.47035 * 120.00133 * 21 19 17
24 24 H 1.48494 * 109.47105 * 240.00337 * 21 19 17
25 25 H 1.09005 * 109.46998 * 300.00272 * 1 2 3
26 26 H 1.09002 * 109.46935 * 59.99806 * 1 2 3
27 27 H 1.08995 * 109.46844 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.47315 * 179.97438 * 3 2 1
29 29 H 1.09002 * 109.47448 * 299.99880 * 3 2 1
30 30 H 1.09006 * 109.46958 * 60.00024 * 3 2 1
31 31 H 0.96700 * 113.99373 * 306.72940 * 4 2 1
32 32 H 1.09008 * 109.47303 * 300.63699 * 5 2 1
33 33 H 1.09000 * 109.47092 * 60.63723 * 5 2 1
34 34 H 1.09007 * 115.54948 * 147.32569 * 7 6 5
35 35 H 1.08995 * 117.49589 * 0.02562 * 8 7 6
36 36 H 1.08998 * 117.49427 * 145.02339 * 8 7 6
37 37 H 1.09000 * 117.49667 * 214.97936 * 9 7 6
38 38 H 1.08996 * 117.50092 * 359.97333 * 9 7 6
39 39 H 1.09000 * 109.47550 * 300.00162 * 13 10 6
40 40 H 1.09005 * 109.47131 * 60.00061 * 13 10 6
41 41 H 1.09004 * 109.46741 * 60.00303 * 15 14 13
42 42 H 1.09005 * 109.47013 * 179.97438 * 15 14 13
43 43 H 1.08994 * 109.47501 * 300.00240 * 15 14 13
44 44 H 1.08993 * 109.47321 * 60.00372 * 16 14 13
45 45 H 1.09009 * 109.46872 * 180.02562 * 16 14 13
46 46 H 1.08997 * 109.47209 * 299.99823 * 16 14 13
47 47 H 0.96994 * 119.99723 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0064 -0.6736 -1.1668
5 6 2.0400 -0.7212 1.2492
6 7 3.5049 -0.7080 1.2570
7 6 4.2505 -1.7273 0.5145
8 6 3.4423 -2.7549 -0.2804
9 6 4.1550 -3.1723 1.0084
10 16 4.3180 0.4592 2.1049
11 8 5.5670 0.5718 1.4367
12 8 3.4117 1.5527 2.1530
13 6 4.5421 -0.2550 3.7572
14 6 5.2899 0.7406 4.6461
15 6 6.6580 1.0448 4.0321
16 6 4.4808 2.0346 4.7552
17 6 5.4766 0.1470 6.0186
18 1 5.0992 -0.8413 6.2353
19 6 6.1293 0.8658 6.9976
20 7 6.5885 2.0697 6.7338
21 14 6.3601 0.1303 8.6991
22 1 5.7564 -1.2259 8.7382
23 1 7.8102 0.0351 9.0047
24 1 5.6976 0.9967 9.7069
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 3.1300 1.4426 0.0005
29 1 1.6767 1.9564 -0.8900
30 1 1.6766 1.9563 0.8900
31 1 1.6394 -1.5602 -1.2864
32 1 1.6674 -0.2140 2.1392
33 1 1.6860 -1.7521 1.2435
34 1 5.2019 -1.4009 0.0942
35 1 2.3559 -2.6722 -0.2513
36 1 3.8622 -3.1048 -1.2235
37 1 5.0433 -3.7966 0.9127
38 1 3.5377 -3.3644 1.8860
39 1 3.5675 -0.4714 4.1948
40 1 5.1181 -1.1771 3.6794
41 1 6.5233 1.4741 3.0393
42 1 7.1906 1.7546 4.6652
43 1 7.2344 0.1231 3.9543
44 1 3.5063 1.8179 5.1926
45 1 5.0139 2.7441 5.3882
46 1 4.3462 2.4638 3.7624
47 1 7.0479 2.5751 7.4225
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000331742854.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:15:14
Heat of formation + Delta-G solvation = -88.311656 kcal
Electronic energy + Delta-G solvation = -27820.096589 eV
Core-core repulsion = 24131.646766 eV
Total energy + Delta-G solvation = -3688.449823 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-39.36318 -37.11334 -36.37797 -36.26393 -35.31338 -33.57965 -31.66357 -31.48509
-27.34462 -26.71202 -26.22947 -25.71829 -25.22709 -22.47811 -21.75993 -20.24105
-19.36538 -18.58172 -17.50571 -17.11287 -16.07413 -15.78754 -15.65830 -15.10347
-14.81943 -14.72457 -14.48653 -14.40150 -13.29429 -13.11377 -12.98296 -12.59084
-12.49902 -12.28827 -12.15463 -12.06165 -11.92987 -11.73717 -11.63173 -11.48823
-11.47920 -11.24295 -11.05809 -11.01643 -10.90519 -10.72075 -10.57778 -10.37918
-10.32052 -10.20110 -10.10518 -10.00532 -9.65626 -9.53194 -8.76919 -8.43627
-8.40952 -6.04033 -4.15915 0.82839 3.03843 3.24122 3.32602 3.35143
3.80169 4.20749 4.33596 4.41180 4.56451 4.63013 4.74468 4.87265
4.92528 4.98123 5.02746 5.16767 5.21437 5.38764 5.50928 5.52986
5.58677 5.70626 5.76130 5.84370 5.87581 5.89056 6.04210 6.10408
6.13816 6.32074 6.38686 6.59066 6.70343 6.75190 6.79735 6.90705
7.04326 7.31115 7.50191 7.64170 7.67398 7.97606 8.09398 8.32757
8.82801 9.49512 10.97293
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.021129 B = 0.004309 C = 0.004081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1324.850742 B = 6496.347407 C = 6859.668907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.110 3.890
3 C -0.132 4.132
4 O -0.549 6.549
5 C 0.098 3.902
6 N -0.971 5.971
7 C 0.095 3.905
8 C -0.168 4.168
9 C -0.206 4.206
10 S 2.594 3.406
11 O -0.961 6.961
12 O -0.956 6.956
13 C -0.583 4.583
14 C 0.082 3.918
15 C -0.163 4.163
16 C -0.163 4.163
17 C -0.501 4.501
18 H 0.058 0.942
19 C 0.064 3.936
20 N -0.883 5.883
21 Si 0.895 3.105
22 H -0.274 1.274
23 H -0.283 1.283
24 H -0.283 1.283
25 H 0.071 0.929
26 H 0.066 0.934
27 H 0.056 0.944
28 H 0.055 0.945
29 H 0.052 0.948
30 H 0.092 0.908
31 H 0.365 0.635
32 H 0.091 0.909
33 H 0.076 0.924
34 H 0.137 0.863
35 H 0.095 0.905
36 H 0.100 0.900
37 H 0.100 0.900
38 H 0.096 0.904
39 H 0.114 0.886
40 H 0.117 0.883
41 H 0.027 0.973
42 H 0.095 0.905
43 H 0.036 0.964
44 H 0.035 0.965
45 H 0.094 0.906
46 H 0.029 0.971
47 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.541 -8.397 -12.545 18.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.068 3.932
3 C -0.190 4.190
4 O -0.356 6.356
5 C -0.028 4.028
6 N -0.803 5.803
7 C -0.012 4.012
8 C -0.207 4.207
9 C -0.246 4.246
10 S 2.694 3.306
11 O -0.951 6.951
12 O -0.947 6.947
13 C -0.716 4.716
14 C 0.080 3.920
15 C -0.221 4.221
16 C -0.221 4.221
17 C -0.540 4.540
18 H 0.077 0.923
19 C -0.138 4.138
20 N -0.522 5.522
21 Si 0.723 3.277
22 H -0.199 1.199
23 H -0.209 1.209
24 H -0.209 1.209
25 H 0.090 0.910
26 H 0.085 0.915
27 H 0.075 0.925
28 H 0.074 0.926
29 H 0.071 0.929
30 H 0.111 0.889
31 H 0.213 0.787
32 H 0.110 0.890
33 H 0.094 0.906
34 H 0.154 0.846
35 H 0.113 0.887
36 H 0.118 0.882
37 H 0.119 0.881
38 H 0.114 0.886
39 H 0.133 0.867
40 H 0.135 0.865
41 H 0.046 0.954
42 H 0.113 0.887
43 H 0.055 0.945
44 H 0.054 0.946
45 H 0.113 0.887
46 H 0.047 0.953
47 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -9.856 -6.823 -12.900 17.610
hybrid contribution -0.352 -1.598 1.551 2.255
sum -10.208 -8.422 -11.349 17.434
Atomic orbital electron populations
1.22481 0.95539 1.02187 1.03432 1.21685 0.92202 0.94170 0.85153
1.21913 1.01945 0.92466 1.02641 1.86716 1.71408 1.32642 1.44818
1.21940 0.80215 1.01319 0.99362 1.57294 1.13187 1.46210 1.63608
1.21378 0.97445 0.83467 0.98944 1.23224 0.98982 1.02624 0.95821
1.23552 1.03623 0.99057 0.98341 1.05766 0.73554 0.74168 0.77092
1.93522 1.43348 1.85313 1.72925 1.93571 1.64218 1.49448 1.87420
1.30582 1.09665 1.12207 1.19187 1.17930 0.90890 0.89699 0.93514
1.22270 0.99500 1.01952 0.98373 1.22266 0.99361 1.00142 1.00283
1.20981 1.36905 1.01949 0.94182 0.92331 1.24942 0.95216 0.94877
0.98718 1.69812 1.38096 1.10748 1.33514 0.86491 0.77899 0.79198
0.84131 1.19859 1.20919 1.20935 0.91044 0.91504 0.92504 0.92623
0.92898 0.88936 0.78676 0.89032 0.90621 0.84581 0.88704 0.88167
0.88117 0.88571 0.86745 0.86491 0.95415 0.88667 0.94513 0.94556
0.88709 0.95265 0.92800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.55 8.76 37.16 0.33 -1.23 16
2 C 0.11 1.28 1.18 -90.62 -0.11 1.17 16
3 C -0.13 -1.92 7.19 37.16 0.27 -1.66 16
4 O -0.55 -6.22 10.89 -35.23 -0.38 -6.60 16
5 C 0.10 1.15 4.32 -4.04 -0.02 1.14 16
6 N -0.97 -13.90 2.58 -107.30 -0.28 -14.18 16
7 C 0.09 1.22 5.89 -67.93 -0.40 0.82 16
8 C -0.17 -1.55 7.94 -26.69 -0.21 -1.76 16
9 C -0.21 -2.13 10.37 -26.69 -0.28 -2.41 16
10 S 2.59 48.38 3.62 -107.50 -0.39 47.99 16
11 O -0.96 -20.60 14.44 -57.54 -0.83 -21.43 16
12 O -0.96 -18.84 10.76 -57.54 -0.62 -19.46 16
13 C -0.58 -11.52 5.12 37.16 0.19 -11.33 16
14 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16
15 C -0.16 -4.07 7.77 37.16 0.29 -3.78 16
16 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16
17 C -0.50 -13.18 8.01 -34.44 -0.28 -13.45 16
18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16
19 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16
20 N -0.88 -24.14 9.35 55.43 0.52 -23.63 16
21 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16
22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.05 0.95 5.98 -51.93 -0.31 0.64 16
29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.09 1.38 6.96 -51.93 -0.36 1.02 16
31 H 0.37 2.79 6.63 45.56 0.30 3.09 16
32 H 0.09 1.07 7.58 -51.92 -0.39 0.68 16
33 H 0.08 0.68 6.49 -51.93 -0.34 0.35 16
34 H 0.14 1.92 7.40 -51.93 -0.38 1.54 16
35 H 0.09 0.73 4.30 -51.93 -0.22 0.50 16
36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16
40 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16
41 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16
42 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16
43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16
44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16
45 H 0.09 2.51 6.07 -51.92 -0.32 2.19 16
46 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16
47 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
LS Contribution 356.51 15.07 5.37 5.37
Total: -1.00 -31.37 356.51 -8.83 -40.20
By element:
Atomic # 1 Polarization: 15.89 SS G_CDS: -7.10 Total: 8.79 kcal
Atomic # 6 Polarization: -32.56 SS G_CDS: -0.10 Total: -32.66 kcal
Atomic # 7 Polarization: -38.05 SS G_CDS: 0.24 Total: -37.80 kcal
Atomic # 8 Polarization: -45.66 SS G_CDS: -1.83 Total: -47.49 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal
Atomic # 16 Polarization: 48.38 SS G_CDS: -0.39 Total: 47.99 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -31.37 -8.83 -40.20 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331742854.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.111 kcal
(2) G-P(sol) polarization free energy of solvation -31.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds