Wall clock time and date at job start Tue Mar 31 2020 13:15:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46974 * 2 1
4 4 O 1.42899 * 109.47339 * 240.00277 * 2 1 3
5 5 C 1.52995 * 109.47150 * 119.99980 * 2 1 3
6 6 N 1.46501 * 109.47537 * 180.63460 * 5 2 1
7 7 C 1.46494 * 119.99948 * 275.82379 * 6 5 2
8 8 C 1.53005 * 117.49967 * 1.65403 * 7 6 5
9 9 C 1.53002 * 117.49719 * 292.99532 * 7 6 5
10 10 S 1.65602 * 120.00016 * 95.81734 * 6 5 2
11 11 O 1.42096 * 104.27927 * 206.07739 * 10 6 5
12 12 O 1.42109 * 104.27768 * 333.93182 * 10 6 5
13 13 C 1.81396 * 104.44885 * 90.00232 * 10 6 5
14 14 C 1.52997 * 109.47277 * 180.02562 * 13 10 6
15 15 C 1.53005 * 109.47044 * 299.99997 * 14 13 10
16 16 C 1.53000 * 109.47024 * 60.00138 * 14 13 10
17 17 C 1.50698 * 109.47231 * 180.02562 * 14 13 10
18 18 H 1.07997 * 119.99998 * 359.97438 * 17 14 13
19 19 C 1.37885 * 119.99955 * 179.97438 * 17 14 13
20 20 N 1.31517 * 120.00040 * 0.02562 * 19 17 14
21 21 Si 1.86799 * 119.99982 * 179.97438 * 19 17 14
22 22 H 1.48505 * 109.46948 * 0.02562 * 21 19 17
23 23 H 1.48505 * 109.47035 * 120.00133 * 21 19 17
24 24 H 1.48494 * 109.47105 * 240.00337 * 21 19 17
25 25 H 1.09005 * 109.46998 * 300.00272 * 1 2 3
26 26 H 1.09002 * 109.46935 * 59.99806 * 1 2 3
27 27 H 1.08995 * 109.46844 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.47315 * 179.97438 * 3 2 1
29 29 H 1.09002 * 109.47448 * 299.99880 * 3 2 1
30 30 H 1.09006 * 109.46958 * 60.00024 * 3 2 1
31 31 H 0.96700 * 113.99373 * 306.72940 * 4 2 1
32 32 H 1.09008 * 109.47303 * 300.63699 * 5 2 1
33 33 H 1.09000 * 109.47092 * 60.63723 * 5 2 1
34 34 H 1.09007 * 115.54948 * 147.32569 * 7 6 5
35 35 H 1.08995 * 117.49589 * 0.02562 * 8 7 6
36 36 H 1.08998 * 117.49427 * 145.02339 * 8 7 6
37 37 H 1.09000 * 117.49667 * 214.97936 * 9 7 6
38 38 H 1.08996 * 117.50092 * 359.97333 * 9 7 6
39 39 H 1.09000 * 109.47550 * 300.00162 * 13 10 6
40 40 H 1.09005 * 109.47131 * 60.00061 * 13 10 6
41 41 H 1.09004 * 109.46741 * 60.00303 * 15 14 13
42 42 H 1.09005 * 109.47013 * 179.97438 * 15 14 13
43 43 H 1.08994 * 109.47501 * 300.00240 * 15 14 13
44 44 H 1.08993 * 109.47321 * 60.00372 * 16 14 13
45 45 H 1.09009 * 109.46872 * 180.02562 * 16 14 13
46 46 H 1.08997 * 109.47209 * 299.99823 * 16 14 13
47 47 H 0.96994 * 119.99723 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0064 -0.6736 -1.1668
5 6 2.0400 -0.7212 1.2492
6 7 3.5049 -0.7080 1.2570
7 6 4.2505 -1.7273 0.5145
8 6 3.4423 -2.7549 -0.2804
9 6 4.1550 -3.1723 1.0084
10 16 4.3180 0.4592 2.1049
11 8 5.5670 0.5718 1.4367
12 8 3.4117 1.5527 2.1530
13 6 4.5421 -0.2550 3.7572
14 6 5.2899 0.7406 4.6461
15 6 6.6580 1.0448 4.0321
16 6 4.4808 2.0346 4.7552
17 6 5.4766 0.1470 6.0186
18 1 5.0992 -0.8413 6.2353
19 6 6.1293 0.8658 6.9976
20 7 6.5885 2.0697 6.7338
21 14 6.3601 0.1303 8.6991
22 1 5.7564 -1.2259 8.7382
23 1 7.8102 0.0351 9.0047
24 1 5.6976 0.9967 9.7069
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 3.1300 1.4426 0.0005
29 1 1.6767 1.9564 -0.8900
30 1 1.6766 1.9563 0.8900
31 1 1.6394 -1.5602 -1.2864
32 1 1.6674 -0.2140 2.1392
33 1 1.6860 -1.7521 1.2435
34 1 5.2019 -1.4009 0.0942
35 1 2.3559 -2.6722 -0.2513
36 1 3.8622 -3.1048 -1.2235
37 1 5.0433 -3.7966 0.9127
38 1 3.5377 -3.3644 1.8860
39 1 3.5675 -0.4714 4.1948
40 1 5.1181 -1.1771 3.6794
41 1 6.5233 1.4741 3.0393
42 1 7.1906 1.7546 4.6652
43 1 7.2344 0.1231 3.9543
44 1 3.5063 1.8179 5.1926
45 1 5.0139 2.7441 5.3882
46 1 4.3462 2.4638 3.7624
47 1 7.0479 2.5751 7.4225
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331742854.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:15:13
Heat of formation + Delta-G solvation = -109.490702 kcal
Electronic energy + Delta-G solvation = -27821.014981 eV
Core-core repulsion = 24131.646766 eV
Total energy + Delta-G solvation = -3689.368215 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.27249 -38.32329 -38.13637 -37.57068 -36.87434 -34.53486 -33.63875 -32.41483
-28.44058 -28.21427 -27.71639 -27.27625 -27.15994 -23.23670 -22.75002 -21.38932
-21.06966 -19.73775 -18.93749 -18.06896 -17.94104 -17.15416 -16.87866 -16.67307
-16.26162 -15.74055 -15.54630 -15.41156 -14.96052 -14.71978 -14.44399 -14.09298
-13.84795 -13.58416 -13.25436 -13.23415 -13.03659 -13.00191 -12.94536 -12.83916
-12.72248 -12.67326 -12.54486 -12.42840 -12.34058 -12.19279 -12.10975 -12.03590
-11.91031 -11.59400 -11.47977 -11.34927 -11.20910 -10.88661 -10.60434 -10.43528
-9.50063 -8.04332 -6.23287 -0.62598 1.41981 1.44726 1.54540 1.78368
2.43153 2.89522 2.99791 3.17546 3.25931 3.43231 3.66893 3.85557
3.94623 4.00495 4.06213 4.13387 4.17965 4.24767 4.32654 4.57634
4.62051 4.66184 4.80053 4.84066 4.84325 4.86214 4.93397 4.97151
5.04089 5.05603 5.09062 5.11309 5.28958 5.34065 5.35401 5.40480
5.45446 5.48312 5.62809 5.76278 5.94479 6.09546 6.32586 6.81498
6.99786 7.45115 8.95756
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.021129 B = 0.004309 C = 0.004081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1324.850742 B = 6496.347407 C = 6859.668907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.114 3.886
3 C -0.138 4.138
4 O -0.562 6.562
5 C 0.086 3.914
6 N -0.961 5.961
7 C 0.052 3.948
8 C -0.139 4.139
9 C -0.198 4.198
10 S 2.609 3.391
11 O -0.996 6.996
12 O -0.972 6.972
13 C -0.588 4.588
14 C 0.070 3.930
15 C -0.159 4.159
16 C -0.157 4.157
17 C -0.516 4.516
18 H 0.062 0.938
19 C 0.017 3.983
20 N -0.909 5.909
21 Si 0.955 3.045
22 H -0.265 1.265
23 H -0.283 1.283
24 H -0.282 1.282
25 H 0.071 0.929
26 H 0.067 0.933
27 H 0.086 0.914
28 H 0.022 0.978
29 H 0.058 0.942
30 H 0.082 0.918
31 H 0.383 0.617
32 H 0.091 0.909
33 H 0.114 0.886
34 H 0.113 0.887
35 H 0.117 0.883
36 H 0.115 0.885
37 H 0.108 0.892
38 H 0.103 0.897
39 H 0.134 0.866
40 H 0.127 0.873
41 H 0.029 0.971
42 H 0.071 0.929
43 H 0.036 0.964
44 H 0.042 0.958
45 H 0.069 0.931
46 H 0.033 0.967
47 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.755 -11.146 -13.122 21.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.071 3.929
3 C -0.195 4.195
4 O -0.371 6.371
5 C -0.039 4.039
6 N -0.795 5.795
7 C -0.055 4.055
8 C -0.177 4.177
9 C -0.238 4.238
10 S 2.709 3.291
11 O -0.986 6.986
12 O -0.962 6.962
13 C -0.720 4.720
14 C 0.068 3.932
15 C -0.216 4.216
16 C -0.215 4.215
17 C -0.555 4.555
18 H 0.080 0.920
19 C -0.182 4.182
20 N -0.547 5.547
21 Si 0.781 3.219
22 H -0.189 1.189
23 H -0.210 1.210
24 H -0.208 1.208
25 H 0.090 0.910
26 H 0.086 0.914
27 H 0.104 0.896
28 H 0.041 0.959
29 H 0.077 0.923
30 H 0.101 0.899
31 H 0.234 0.766
32 H 0.109 0.891
33 H 0.132 0.868
34 H 0.131 0.869
35 H 0.135 0.865
36 H 0.133 0.867
37 H 0.126 0.874
38 H 0.122 0.878
39 H 0.152 0.848
40 H 0.145 0.855
41 H 0.048 0.952
42 H 0.090 0.910
43 H 0.055 0.945
44 H 0.061 0.939
45 H 0.088 0.912
46 H 0.052 0.948
47 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -12.072 -9.585 -13.465 20.468
hybrid contribution 0.327 -0.755 1.621 1.818
sum -11.746 -10.341 -11.844 19.626
Atomic orbital electron populations
1.22423 0.92862 1.04186 1.03560 1.21569 0.93998 0.92121 0.85178
1.21919 0.99808 0.95345 1.02458 1.86688 1.71924 1.34025 1.44503
1.22313 0.78304 1.03701 0.99573 1.56834 1.14230 1.45908 1.62538
1.21503 0.97946 0.84247 1.01764 1.23387 0.99932 0.98517 0.95899
1.23633 1.04284 0.96477 0.99356 1.04987 0.72961 0.74573 0.76617
1.93467 1.45604 1.86190 1.73351 1.93545 1.64241 1.50907 1.87531
1.30528 1.10203 1.11406 1.19846 1.17915 0.90822 0.90587 0.93910
1.22197 1.00164 1.01275 0.98002 1.22178 0.99314 1.00007 1.00022
1.21311 1.36830 1.02122 0.95273 0.92019 1.25694 0.95125 0.95246
1.02151 1.69954 1.38577 1.11790 1.34421 0.85553 0.77617 0.78766
0.79984 1.18918 1.20951 1.20776 0.90960 0.91432 0.89561 0.95875
0.92335 0.89927 0.76581 0.89066 0.86796 0.86933 0.86475 0.86674
0.87394 0.87845 0.84820 0.85461 0.95236 0.91016 0.94458 0.93917
0.91210 0.94777 0.92908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.40 8.76 71.98 0.63 -1.77 16
2 C 0.11 2.35 1.18 -10.79 -0.01 2.34 16
3 C -0.14 -3.97 7.19 71.98 0.52 -3.45 16
4 O -0.56 -11.02 10.89 -148.98 -1.62 -12.64 16
5 C 0.09 1.78 4.32 86.38 0.37 2.16 16
6 N -0.96 -26.18 2.58 -493.38 -1.27 -27.45 16
7 C 0.05 1.26 5.89 44.99 0.27 1.52 16
8 C -0.14 -2.03 7.94 30.62 0.24 -1.79 16
9 C -0.20 -3.49 10.37 30.62 0.32 -3.17 16
10 S 2.61 97.98 3.62 -56.49 -0.20 97.78 16
11 O -1.00 -44.08 14.44 -127.65 -1.84 -45.93 16
12 O -0.97 -38.90 10.76 -127.65 -1.37 -40.27 16
13 C -0.59 -22.96 5.12 71.98 0.37 -22.59 16
14 C 0.07 3.42 0.52 -52.93 -0.03 3.40 16
15 C -0.16 -8.15 7.77 71.98 0.56 -7.59 16
16 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16
17 C -0.52 -27.17 8.01 25.60 0.21 -26.97 16
18 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16
19 C 0.02 0.91 5.15 84.66 0.44 1.35 16
20 N -0.91 -50.80 9.35 21.45 0.20 -50.60 16
21 Si 0.95 42.26 29.54 68.60 2.03 44.29 16
22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16
23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
25 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16
26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
27 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16
28 H 0.02 0.79 5.98 -2.39 -0.01 0.78 16
29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
30 H 0.08 2.49 6.96 -2.38 -0.02 2.47 16
31 H 0.38 4.08 6.63 -74.06 -0.49 3.59 16
32 H 0.09 1.92 7.58 -2.38 -0.02 1.90 16
33 H 0.11 1.49 6.49 -2.39 -0.02 1.47 16
34 H 0.11 3.22 7.40 -2.38 -0.02 3.20 16
35 H 0.12 1.16 4.30 -2.39 -0.01 1.15 16
36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16
37 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16
38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16
39 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16
40 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16
41 H 0.03 1.46 5.47 -2.39 -0.01 1.45 16
42 H 0.07 4.00 6.07 -2.38 -0.01 3.98 16
43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16
45 H 0.07 3.82 6.07 -2.38 -0.01 3.80 16
46 H 0.03 1.62 5.46 -2.39 -0.01 1.61 16
47 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16
Total: -1.00 -69.90 356.51 0.82 -69.08
By element:
Atomic # 1 Polarization: 29.13 SS G_CDS: 0.48 Total: 29.61 kcal
Atomic # 6 Polarization: -68.30 SS G_CDS: 4.43 Total: -63.86 kcal
Atomic # 7 Polarization: -76.98 SS G_CDS: -1.07 Total: -78.05 kcal
Atomic # 8 Polarization: -94.00 SS G_CDS: -4.84 Total: -98.83 kcal
Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal
Atomic # 16 Polarization: 97.98 SS G_CDS: -0.20 Total: 97.78 kcal
Total: -69.90 0.82 -69.08 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331742854.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.413 kcal
(2) G-P(sol) polarization free energy of solvation -69.900 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.491 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds