Wall clock time and date at job start Tue Mar 31 2020 12:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.53005 * 109.46865 * 119.99806 * 2 1 3 5 5 C 1.50695 * 109.47088 * 299.99739 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 C 1.53002 * 109.46891 * 239.99600 * 2 1 3 14 14 N 1.46497 * 109.46729 * 60.00395 * 13 2 1 15 15 S 1.65610 * 119.99737 * 164.99851 * 14 13 2 16 16 O 1.42100 * 104.27338 * 181.07007 * 15 14 13 17 17 O 1.42093 * 104.27491 * 308.92452 * 15 14 13 18 18 C 1.81401 * 104.44810 * 64.99997 * 15 14 13 19 19 C 1.53000 * 109.46860 * 179.97438 * 18 15 14 20 20 C 1.53002 * 109.46749 * 179.97438 * 19 18 15 21 21 H 1.08993 * 110.45472 * 52.39729 * 20 19 18 22 22 C 1.54515 * 110.50861 * 175.00217 * 20 19 18 23 23 C 1.54477 * 104.06364 * 118.64518 * 22 20 19 24 24 O 1.44425 * 104.80286 * 23.98080 * 23 22 20 25 25 C 1.44430 * 105.27328 * 319.48240 * 24 23 22 26 26 H 1.09004 * 109.47368 * 300.00209 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99825 * 1 2 3 28 28 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46497 * 299.99836 * 3 2 1 31 31 H 1.08996 * 109.46876 * 60.00226 * 3 2 1 32 32 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47061 * 60.00498 * 4 2 1 34 34 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 35 35 H 1.09002 * 109.46838 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47142 * 300.00176 * 13 2 1 37 37 H 0.96991 * 120.00413 * 344.99627 * 14 13 2 38 38 H 1.09002 * 109.46620 * 299.99672 * 18 15 14 39 39 H 1.08998 * 109.47451 * 60.00008 * 18 15 14 40 40 H 1.08991 * 109.47173 * 299.99797 * 19 18 15 41 41 H 1.08998 * 109.47061 * 59.99795 * 19 18 15 42 42 H 1.09002 * 110.50655 * 237.29586 * 22 20 19 43 43 H 1.09006 * 110.50913 * 359.97438 * 22 20 19 44 44 H 1.09003 * 110.36996 * 142.80680 * 23 22 20 45 45 H 1.08998 * 110.36857 * 265.03208 * 23 22 20 46 46 H 1.08996 * 110.37433 * 281.68231 * 25 24 23 47 47 H 1.08998 * 110.36735 * 159.34019 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 2.6280 -1.5503 3.8527 9 14 1.2480 0.3986 5.2572 10 1 -0.2371 0.3977 5.2573 11 1 1.7420 1.7991 5.2571 12 1 1.7430 -0.3013 6.4697 13 6 2.0399 -0.7214 -1.2492 14 7 1.5516 -0.0307 -2.4453 15 16 2.2317 -0.3497 -3.9213 16 8 1.5364 0.5042 -4.8193 17 8 3.6280 -0.2021 -3.7029 18 6 1.8179 -2.0860 -4.2446 19 6 2.3975 -2.5051 -5.5971 20 6 2.0490 -3.9698 -5.8694 21 1 0.9774 -4.1336 -5.7570 22 6 2.5145 -4.3830 -7.2837 23 6 3.5353 -5.5138 -7.0274 24 8 3.1762 -6.0492 -5.7350 25 6 2.8438 -4.8998 -4.9261 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 2.9513 -2.0076 3.0607 35 1 3.1299 -0.7210 -1.2494 36 1 1.6765 -1.7490 -1.2492 37 1 0.8300 0.6133 -2.3729 38 1 2.2394 -2.7124 -3.4584 39 1 0.7345 -2.2043 -4.2617 40 1 1.9757 -1.8787 -6.3829 41 1 3.4810 -2.3868 -5.5804 42 1 1.6732 -4.7534 -7.8695 43 1 2.9925 -3.5437 -7.7889 44 1 3.4492 -6.2837 -7.7942 45 1 4.5485 -5.1125 -7.0057 46 1 3.7508 -4.4041 -4.5801 47 1 2.2264 -5.1980 -4.0787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338990125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:43 Heat of formation + Delta-G solvation = -151.401757 kcal Electronic energy + Delta-G solvation = -25662.600809 eV Core-core repulsion = 21971.415194 eV Total energy + Delta-G solvation = -3691.185615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.88626 -37.88736 -37.10407 -36.00519 -35.22930 -33.81481 -31.98880 -31.25789 -28.86168 -26.68883 -26.56100 -25.90116 -24.64865 -22.89177 -22.77609 -20.81075 -19.37168 -18.73473 -17.61947 -17.01947 -16.53353 -16.36879 -16.32889 -15.94648 -15.73381 -14.96586 -14.60819 -14.29536 -14.08640 -13.81422 -13.63196 -13.24164 -13.11861 -12.89367 -12.60162 -12.36732 -12.27152 -12.16111 -12.04168 -11.97802 -11.69548 -11.62505 -11.32475 -11.25704 -11.17093 -11.02388 -11.01821 -10.68709 -10.64728 -10.28071 -10.15367 -10.12576 -10.02230 -9.47873 -9.29563 -8.49580 -8.34030 -6.35455 -4.04526 0.17153 2.70460 3.42722 3.44012 3.54911 3.62507 3.66819 3.97805 4.02733 4.25495 4.43036 4.45368 4.53168 4.60406 4.73327 4.87853 4.96689 5.11075 5.14672 5.22801 5.32472 5.35721 5.39568 5.41772 5.44667 5.45670 5.57743 5.60676 5.71786 5.73603 5.98357 6.11188 6.20895 6.29898 6.40979 6.55108 6.58844 6.92220 6.98038 7.03702 7.08342 7.29297 7.45613 8.19821 8.45308 8.87976 9.65963 11.04486 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002872 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.409654 B = 9747.904831 C =10856.779502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.021 3.979 5 C -0.591 4.591 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 1.065 2.935 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.120 3.880 14 N -1.113 6.113 15 S 2.610 3.390 16 O -0.965 6.965 17 O -0.954 6.954 18 C -0.637 4.637 19 C -0.103 4.103 20 C -0.114 4.114 21 H 0.090 0.910 22 C -0.155 4.155 23 C 0.042 3.958 24 O -0.375 6.375 25 C 0.044 3.956 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.010 0.990 33 H 0.008 0.992 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -4.143 -21.574 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.185 4.185 4 C -0.017 4.017 5 C -0.629 4.629 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.894 3.106 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.209 1.209 13 C -0.006 4.006 14 N -0.874 5.874 15 S 2.702 3.298 16 O -0.956 6.956 17 O -0.944 6.944 18 C -0.765 4.765 19 C -0.142 4.142 20 C -0.134 4.134 21 H 0.108 0.892 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.294 6.294 25 C -0.033 4.033 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.253 0.747 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.604 -3.925 -20.382 20.818 hybrid contribution -0.724 -0.140 -1.435 1.613 sum -2.328 -4.064 -21.817 22.314 Atomic orbital electron populations 1.21761 0.95130 1.01014 1.00597 1.20654 0.95519 0.95999 0.93800 1.21744 1.00550 0.95653 1.00539 1.19256 0.95749 0.95084 0.91620 1.21978 1.34787 1.14410 0.91757 0.92848 1.25776 0.95287 0.96551 1.01374 1.70787 1.32516 1.18348 1.33442 0.83589 0.75834 0.75365 0.75822 1.21563 1.21517 1.20894 1.21613 0.99236 0.94992 0.84722 1.55529 1.53147 1.55861 1.22885 1.04903 0.74727 0.76921 0.73224 1.93587 1.74987 1.62879 1.64104 1.93610 1.31257 1.85078 1.84475 1.30705 1.11979 1.27242 1.06587 1.21391 1.01695 0.97200 0.93909 1.22516 1.01707 0.94104 0.95069 0.89189 1.23062 0.99989 0.99306 0.96926 1.23432 0.97633 0.96162 0.86232 1.89147 1.88062 1.29057 1.23108 1.23615 0.98742 0.86483 0.94475 0.91252 0.94886 0.93494 0.93381 0.94724 0.91454 0.97201 0.97365 0.92137 0.90571 0.92329 0.74701 0.84761 0.84594 0.89811 0.89963 0.90302 0.90026 0.89074 0.92080 0.91627 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.06 -1.06 0.55 -154.51 -0.08 -1.15 16 3 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 4 C 0.02 0.48 3.35 -27.88 -0.09 0.39 16 5 C -0.59 -15.54 7.65 -34.44 -0.26 -15.80 16 6 H 0.05 1.37 5.68 -52.49 -0.30 1.08 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.91 -27.15 13.65 55.43 0.76 -26.40 16 9 Si 1.07 24.61 29.90 -169.99 -5.08 19.53 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.12 1.80 5.02 -4.04 -0.02 1.77 16 14 N -1.11 -14.08 5.22 -10.61 -0.06 -14.13 16 15 S 2.61 31.02 5.46 -107.50 -0.59 30.44 16 16 O -0.97 -13.81 18.08 -57.54 -1.04 -14.85 16 17 O -0.95 -14.75 17.50 -57.54 -1.01 -15.76 16 18 C -0.64 -5.15 5.95 37.16 0.22 -4.93 16 19 C -0.10 -0.78 4.44 -26.73 -0.12 -0.90 16 20 C -0.11 -0.83 3.11 -89.05 -0.28 -1.11 16 21 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 22 C -0.15 -0.99 6.74 -25.16 -0.17 -1.15 16 23 C 0.04 0.31 7.63 37.93 0.29 0.60 16 24 O -0.38 -3.90 11.65 -35.23 -0.41 -4.31 16 25 C 0.04 0.38 6.51 37.93 0.25 0.62 16 26 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 27 H 0.03 0.45 6.60 -51.93 -0.34 0.11 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.54 7.19 -51.93 -0.37 0.17 16 31 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.01 0.24 8.01 -51.93 -0.42 -0.17 16 33 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 34 H 0.27 7.89 7.22 -40.82 -0.29 7.60 16 35 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.42 4.99 6.44 -34.47 -0.22 4.76 16 38 H 0.13 0.97 7.63 -51.92 -0.40 0.58 16 39 H 0.14 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.43 7.73 -51.93 -0.40 0.03 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.55 7.74 -51.93 -0.40 0.15 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -34.29 377.86 -9.59 -43.87 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.09 Total: 1.17 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 0.23 Total: -25.25 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.70 Total: -40.53 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -2.46 Total: -34.92 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 16 Polarization: 31.02 SS G_CDS: -0.59 Total: 30.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.29 -9.59 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338990125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.530 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds