Wall clock time and date at job start Tue Mar 31 2020 12:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.53005 * 109.46865 * 119.99806 * 2 1 3 5 5 C 1.50695 * 109.47088 * 299.99739 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 59.99744 * 9 7 5 11 11 H 1.48503 * 109.47261 * 299.99924 * 9 7 5 12 12 H 1.48500 * 109.47454 * 179.97438 * 9 7 5 13 13 C 1.53002 * 109.46891 * 239.99600 * 2 1 3 14 14 N 1.46497 * 109.46729 * 60.00395 * 13 2 1 15 15 S 1.65610 * 119.99737 * 164.99851 * 14 13 2 16 16 O 1.42100 * 104.27338 * 181.07007 * 15 14 13 17 17 O 1.42093 * 104.27491 * 308.92452 * 15 14 13 18 18 C 1.81401 * 104.44810 * 64.99997 * 15 14 13 19 19 C 1.53000 * 109.46860 * 179.97438 * 18 15 14 20 20 C 1.53002 * 109.46749 * 179.97438 * 19 18 15 21 21 H 1.08993 * 110.45472 * 52.39729 * 20 19 18 22 22 C 1.54515 * 110.50861 * 175.00217 * 20 19 18 23 23 C 1.54477 * 104.06364 * 118.64518 * 22 20 19 24 24 O 1.44425 * 104.80286 * 23.98080 * 23 22 20 25 25 C 1.44430 * 105.27328 * 319.48240 * 24 23 22 26 26 H 1.09004 * 109.47368 * 300.00209 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99825 * 1 2 3 28 28 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46497 * 299.99836 * 3 2 1 31 31 H 1.08996 * 109.46876 * 60.00226 * 3 2 1 32 32 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47061 * 60.00498 * 4 2 1 34 34 H 0.97006 * 119.99995 * 359.97438 * 8 7 5 35 35 H 1.09002 * 109.46838 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47142 * 300.00176 * 13 2 1 37 37 H 0.96991 * 120.00413 * 344.99627 * 14 13 2 38 38 H 1.09002 * 109.46620 * 299.99672 * 18 15 14 39 39 H 1.08998 * 109.47451 * 60.00008 * 18 15 14 40 40 H 1.08991 * 109.47173 * 299.99797 * 19 18 15 41 41 H 1.08998 * 109.47061 * 59.99795 * 19 18 15 42 42 H 1.09002 * 110.50655 * 237.29586 * 22 20 19 43 43 H 1.09006 * 110.50913 * 359.97438 * 22 20 19 44 44 H 1.09003 * 110.36996 * 142.80680 * 23 22 20 45 45 H 1.08998 * 110.36857 * 265.03208 * 23 22 20 46 46 H 1.08996 * 110.37433 * 281.68231 * 25 24 23 47 47 H 1.08998 * 110.36735 * 159.34019 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 2.6280 -1.5503 3.8527 9 14 1.2480 0.3986 5.2572 10 1 -0.2371 0.3977 5.2573 11 1 1.7420 1.7991 5.2571 12 1 1.7430 -0.3013 6.4697 13 6 2.0399 -0.7214 -1.2492 14 7 1.5516 -0.0307 -2.4453 15 16 2.2317 -0.3497 -3.9213 16 8 1.5364 0.5042 -4.8193 17 8 3.6280 -0.2021 -3.7029 18 6 1.8179 -2.0860 -4.2446 19 6 2.3975 -2.5051 -5.5971 20 6 2.0490 -3.9698 -5.8694 21 1 0.9774 -4.1336 -5.7570 22 6 2.5145 -4.3830 -7.2837 23 6 3.5353 -5.5138 -7.0274 24 8 3.1762 -6.0492 -5.7350 25 6 2.8438 -4.8998 -4.9261 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 2.9513 -2.0076 3.0607 35 1 3.1299 -0.7210 -1.2494 36 1 1.6765 -1.7490 -1.2492 37 1 0.8300 0.6133 -2.3729 38 1 2.2394 -2.7124 -3.4584 39 1 0.7345 -2.2043 -4.2617 40 1 1.9757 -1.8787 -6.3829 41 1 3.4810 -2.3868 -5.5804 42 1 1.6732 -4.7534 -7.8695 43 1 2.9925 -3.5437 -7.7889 44 1 3.4492 -6.2837 -7.7942 45 1 4.5485 -5.1125 -7.0057 46 1 3.7508 -4.4041 -4.5801 47 1 2.2264 -5.1980 -4.0787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338990125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:42 Heat of formation + Delta-G solvation = -176.078783 kcal Electronic energy + Delta-G solvation = -25663.670885 eV Core-core repulsion = 21971.415194 eV Total energy + Delta-G solvation = -3692.255691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48139 -39.30883 -38.16724 -37.05761 -35.86881 -35.46972 -33.63730 -31.84263 -29.46812 -28.53839 -28.00355 -27.26286 -25.29800 -24.69856 -23.44441 -21.37095 -20.36492 -20.22441 -18.75579 -18.34258 -17.75092 -17.27563 -17.16979 -16.62133 -16.49346 -16.06222 -15.77897 -15.64288 -15.40680 -15.25412 -14.43337 -14.37114 -14.14399 -13.81720 -13.78761 -13.70837 -13.26795 -13.25316 -13.12390 -13.02256 -12.84888 -12.80623 -12.60678 -12.53210 -12.33283 -12.25494 -11.95731 -11.82927 -11.79937 -11.64962 -11.55826 -11.35711 -11.15542 -10.78916 -10.50974 -10.45501 -10.29826 -8.55743 -6.24179 -0.74678 1.55220 1.62504 1.72940 1.80539 2.61569 2.75111 3.02824 3.21559 3.26454 3.36159 3.63652 3.83079 3.86575 3.90572 3.96481 4.06210 4.16023 4.20321 4.35892 4.38414 4.44833 4.55259 4.67217 4.68376 4.71148 4.80619 4.82865 4.84109 4.87793 4.91665 4.94185 5.06987 5.09469 5.10743 5.20877 5.33184 5.38638 5.43930 5.54548 5.69907 5.82622 6.07530 6.15628 6.32336 6.71856 7.54349 8.84989 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002872 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.409654 B = 9747.904831 C =10856.779502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C -0.126 4.126 4 C 0.022 3.978 5 C -0.590 4.590 6 H 0.058 0.942 7 C -0.043 4.043 8 N -0.947 5.947 9 Si 1.109 2.891 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.290 1.290 13 C 0.127 3.873 14 N -1.111 6.111 15 S 2.616 3.384 16 O -0.989 6.989 17 O -0.997 6.997 18 C -0.613 4.613 19 C -0.111 4.111 20 C -0.109 4.109 21 H 0.100 0.900 22 C -0.153 4.153 23 C 0.034 3.966 24 O -0.403 6.403 25 C 0.034 3.966 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.048 0.952 32 H -0.016 1.016 33 H -0.005 1.005 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.421 0.579 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -4.004 -23.173 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.016 4.016 5 C -0.628 4.628 6 H 0.076 0.924 7 C -0.240 4.240 8 N -0.586 5.586 9 Si 0.932 3.068 10 H -0.194 1.194 11 H -0.199 1.199 12 H -0.216 1.216 13 C 0.001 3.999 14 N -0.872 5.872 15 S 2.713 3.287 16 O -0.980 6.980 17 O -0.987 6.987 18 C -0.746 4.746 19 C -0.150 4.150 20 C -0.129 4.129 21 H 0.118 0.882 22 C -0.191 4.191 23 C -0.043 4.043 24 O -0.323 6.323 25 C -0.042 4.042 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.002 0.998 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.258 0.742 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.383 -3.719 -21.994 22.561 hybrid contribution -0.147 -0.232 -1.030 1.066 sum -3.530 -3.951 -23.023 23.625 Atomic orbital electron populations 1.21704 0.93576 1.01545 1.01271 1.20540 0.96739 0.95571 0.93040 1.21715 0.99684 0.95900 1.01033 1.19184 0.94050 0.94780 0.93583 1.22385 1.33591 1.14132 0.92727 0.92389 1.27169 0.95147 0.96647 1.05024 1.70913 1.34788 1.20018 1.32836 0.83016 0.76521 0.74918 0.72335 1.19423 1.19919 1.21624 1.21380 0.98618 0.95934 0.84000 1.55359 1.53053 1.56405 1.22359 1.04573 0.73385 0.78366 0.72354 1.93553 1.75055 1.65102 1.64285 1.93559 1.33815 1.86580 1.84796 1.30503 1.14071 1.22500 1.07509 1.21537 1.01944 0.97766 0.93801 1.22484 1.02050 0.93152 0.95197 0.88157 1.23088 1.00102 0.99290 0.96605 1.23630 0.98189 0.96993 0.85447 1.89114 1.88332 1.30339 1.24487 1.23754 0.99034 0.86516 0.94916 0.93489 0.91290 0.93044 0.94764 0.91860 0.93248 0.99806 0.98647 0.93495 0.91811 0.89922 0.74207 0.83469 0.81696 0.88560 0.90006 0.89307 0.88858 0.87982 0.91803 0.91880 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -2.05 0.55 -52.18 -0.03 -2.08 16 3 C -0.13 -4.52 8.05 71.98 0.58 -3.94 16 4 C 0.02 1.03 3.35 29.85 0.10 1.13 16 5 C -0.59 -31.31 7.65 25.60 0.20 -31.12 16 6 H 0.06 2.98 5.68 -2.91 -0.02 2.96 16 7 C -0.04 -2.42 5.46 84.66 0.46 -1.95 16 8 N -0.95 -57.60 13.65 21.45 0.29 -57.31 16 9 Si 1.11 49.46 29.90 68.60 2.05 51.52 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.13 3.62 5.02 86.38 0.43 4.05 16 14 N -1.11 -25.65 5.22 -187.49 -0.98 -26.63 16 15 S 2.62 57.43 5.46 -56.49 -0.31 57.12 16 16 O -0.99 -26.44 18.08 -127.65 -2.31 -28.75 16 17 O -1.00 -30.31 17.50 -127.65 -2.23 -32.54 16 18 C -0.61 -7.95 5.95 71.98 0.43 -7.52 16 19 C -0.11 -1.38 4.44 30.59 0.14 -1.24 16 20 C -0.11 -1.28 3.11 -9.77 -0.03 -1.31 16 21 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 22 C -0.15 -1.56 6.74 31.61 0.21 -1.34 16 23 C 0.03 0.44 7.63 72.48 0.55 1.00 16 24 O -0.40 -7.95 11.65 -148.98 -1.74 -9.69 16 25 C 0.03 0.54 6.51 72.49 0.47 1.01 16 26 H 0.05 1.69 6.62 -2.39 -0.02 1.67 16 27 H 0.07 1.68 6.60 -2.39 -0.02 1.66 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.88 7.19 -2.39 -0.02 1.86 16 31 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 32 H -0.02 -0.86 8.01 -2.39 -0.02 -0.88 16 33 H 0.00 -0.24 8.01 -2.39 -0.02 -0.26 16 34 H 0.26 15.63 7.22 -92.70 -0.67 14.96 16 35 H 0.06 1.98 7.69 -2.39 -0.02 1.97 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.42 8.88 6.44 -96.75 -0.62 8.25 16 38 H 0.15 1.65 7.63 -2.39 -0.02 1.64 16 39 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.04 7.96 -2.39 -0.02 1.02 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.73 7.73 -2.38 -0.02 0.71 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.98 7.74 -2.39 -0.02 0.97 16 47 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.49 377.86 -0.70 -76.19 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.42 Total: 16.74 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 4.09 Total: -46.66 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -0.69 Total: -83.94 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -6.28 Total: -70.98 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 16 Polarization: 57.43 SS G_CDS: -0.31 Total: 57.12 kcal Total: -75.49 -0.70 -76.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338990125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.884 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds