Wall clock time and date at job start Tue Mar 31 2020 12:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 S 1.65601 * 119.99998 * 165.00170 * 14 13 2 16 16 O 1.42099 * 104.27705 * 181.07357 * 15 14 13 17 17 O 1.42108 * 104.27438 * 308.93139 * 15 14 13 18 18 C 1.81399 * 104.44994 * 64.99904 * 15 14 13 19 19 C 1.53000 * 109.46861 * 179.97438 * 18 15 14 20 20 C 1.53004 * 109.47013 * 180.02562 * 19 18 15 21 21 H 1.09004 * 110.43164 * 305.69914 * 20 19 18 22 22 C 1.54808 * 110.48869 * 183.16138 * 20 19 18 23 23 C 1.55227 * 101.98389 * 220.52013 * 22 20 19 24 24 O 1.44379 * 103.57023 * 36.87701 * 23 22 20 25 25 C 1.43745 * 106.97259 * 320.01540 * 24 23 22 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 37 37 H 0.96994 * 119.99887 * 345.00254 * 14 13 2 38 38 H 1.08993 * 109.47380 * 299.99837 * 18 15 14 39 39 H 1.08997 * 109.46939 * 60.00356 * 18 15 14 40 40 H 1.09000 * 109.47510 * 300.00112 * 19 18 15 41 41 H 1.08997 * 109.46888 * 60.00527 * 19 18 15 42 42 H 1.09001 * 110.90566 * 338.63581 * 22 20 19 43 43 H 1.08992 * 110.91435 * 102.24280 * 22 20 19 44 44 H 1.09008 * 110.51623 * 278.37665 * 23 22 20 45 45 H 1.09001 * 110.77955 * 155.49896 * 23 22 20 46 46 H 1.09008 * 109.87685 * 267.08709 * 25 24 23 47 47 H 1.08998 * 110.00493 * 146.00901 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 1.4316 0.1374 4.8057 9 14 2.9443 -2.0010 3.9033 10 1 4.3721 -1.5950 3.9494 11 1 2.5928 -2.7170 5.1558 12 1 2.7221 -2.8981 2.7410 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 16 2.2318 -0.3494 -3.9213 16 8 1.5364 0.5045 -4.8194 17 8 3.6282 -0.2018 -3.7029 18 6 1.8182 -2.0857 -4.2446 19 6 2.3979 -2.5047 -5.5972 20 6 2.0486 -3.9691 -5.8702 21 1 2.3754 -4.5989 -5.0428 22 6 2.6913 -4.4412 -7.1971 23 6 1.5580 -5.3031 -7.8154 24 8 0.3550 -4.5924 -7.4517 25 6 0.5336 -4.1277 -6.1032 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2492 34 1 1.6659 -0.1940 5.6868 35 1 3.1301 -0.7207 -1.2494 36 1 1.6767 -1.7488 -1.2493 37 1 0.8300 0.6135 -2.3730 38 1 2.2397 -2.7121 -3.4586 39 1 0.7348 -2.2040 -4.2618 40 1 1.9761 -1.8783 -6.3831 41 1 3.4813 -2.3863 -5.5804 42 1 2.9277 -3.5921 -7.8384 43 1 3.5802 -5.0424 -7.0066 44 1 1.5589 -6.3033 -7.3819 45 1 1.6598 -5.3558 -8.8994 46 1 0.1252 -4.8564 -5.4029 47 1 0.0356 -3.1672 -5.9708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338990126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:47 Heat of formation + Delta-G solvation = -143.765096 kcal Electronic energy + Delta-G solvation = -25624.928906 eV Core-core repulsion = 21934.074442 eV Total energy + Delta-G solvation = -3690.854464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92421 -37.89210 -37.09574 -35.99655 -35.24102 -33.63766 -31.97722 -31.33915 -28.88342 -27.76235 -26.53745 -25.93112 -24.79236 -22.70650 -22.37269 -20.86481 -19.33961 -18.46275 -17.55206 -17.18515 -16.96223 -16.66498 -16.12367 -16.04672 -15.33075 -15.06682 -14.49159 -14.36749 -14.18016 -13.97840 -13.69468 -13.20669 -12.95967 -12.81039 -12.64697 -12.43276 -12.39887 -12.15519 -12.06243 -11.97248 -11.90568 -11.83773 -11.33464 -11.29720 -11.13731 -11.12213 -11.01270 -10.70773 -10.62225 -10.55239 -10.06386 -9.99585 -9.80595 -9.54123 -9.29276 -9.00429 -8.56300 -6.06396 -4.03697 0.17331 2.70898 3.27938 3.36065 3.37029 3.51614 3.63070 3.91935 4.05635 4.20584 4.35018 4.42132 4.44304 4.62733 4.72640 4.82194 4.98943 5.05544 5.13314 5.22830 5.25435 5.27755 5.32598 5.38936 5.41485 5.46350 5.55495 5.59681 5.69327 5.71684 5.98534 6.10882 6.20791 6.33252 6.44771 6.56536 6.62447 6.89437 7.00651 7.06141 7.08332 7.16751 7.33095 7.75806 8.51113 8.98446 9.55853 11.06491 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.002921 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.699825 B = 9583.568974 C =10380.733962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 C -0.130 4.130 4 C -0.005 4.005 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.118 3.882 14 N -1.112 6.112 15 S 2.610 3.390 16 O -0.964 6.964 17 O -0.955 6.955 18 C -0.638 4.638 19 C -0.103 4.103 20 C -0.115 4.115 21 H 0.090 0.910 22 C -0.155 4.155 23 C 0.045 3.955 24 O -0.378 6.378 25 C 0.046 3.954 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.017 0.983 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 -9.530 -22.931 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.043 4.043 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.007 4.007 14 N -0.874 5.874 15 S 2.702 3.298 16 O -0.954 6.954 17 O -0.945 6.945 18 C -0.767 4.767 19 C -0.141 4.141 20 C -0.135 4.135 21 H 0.109 0.891 22 C -0.192 4.192 23 C -0.032 4.032 24 O -0.297 6.297 25 C -0.031 4.031 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.200 -9.023 -23.396 25.104 hybrid contribution 0.139 -1.301 0.836 1.552 sum 1.340 -10.324 -22.560 24.846 Atomic orbital electron populations 1.21782 0.94827 1.01124 1.00993 1.20584 0.95773 0.96050 0.93289 1.21770 1.00546 0.95496 1.00941 1.19639 0.95996 0.95776 0.92855 1.21087 1.31882 1.13304 0.88591 0.90360 1.25016 0.95776 0.96735 0.96002 1.69903 1.45922 1.40542 0.97891 0.86846 0.81243 0.84002 0.77537 1.20357 1.21558 1.19124 1.21626 0.99252 0.95024 0.84839 1.55526 1.53190 1.55886 1.22812 1.04905 0.74734 0.76897 0.73239 1.93594 1.74944 1.62797 1.64039 1.93609 1.31266 1.85074 1.84507 1.30736 1.11887 1.27422 1.06607 1.21371 1.01838 0.97097 0.93837 1.22528 0.95792 0.96371 0.98830 0.89143 1.23294 0.98980 1.00767 0.96188 1.23603 0.83581 0.95171 1.00808 1.88890 1.38050 1.73120 1.29646 1.23340 0.95191 1.00224 0.84328 0.90835 0.94764 0.93440 0.93326 0.94597 0.91044 0.96717 0.96433 0.92790 0.90529 0.92276 0.74573 0.84598 0.84767 0.89880 0.89747 0.89973 0.89762 0.92130 0.88859 0.92027 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.06 -0.97 0.55 -154.51 -0.08 -1.05 16 3 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.37 8.20 -34.44 -0.28 -13.65 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.82 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 9 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.12 1.66 5.02 -4.04 -0.02 1.64 16 14 N -1.11 -13.51 5.22 -10.61 -0.06 -13.57 16 15 S 2.61 30.24 5.46 -107.50 -0.59 29.65 16 16 O -0.96 -13.72 18.08 -57.54 -1.04 -14.76 16 17 O -0.95 -14.36 17.50 -57.54 -1.01 -15.36 16 18 C -0.64 -4.93 5.91 37.16 0.22 -4.71 16 19 C -0.10 -0.77 4.42 -26.73 -0.12 -0.89 16 20 C -0.12 -0.79 3.06 -89.09 -0.27 -1.06 16 21 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.15 -0.92 6.73 -24.60 -0.17 -1.09 16 23 C 0.04 0.30 7.72 38.34 0.30 0.59 16 24 O -0.38 -3.67 11.52 -35.23 -0.41 -4.07 16 25 C 0.05 0.36 6.94 37.73 0.26 0.62 16 26 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 27 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 32 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 33 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.10 7.69 -51.93 -0.40 0.71 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.42 4.83 6.44 -34.47 -0.22 4.61 16 38 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.13 0.82 6.98 -51.93 -0.36 0.46 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.09 0.67 6.82 -51.93 -0.35 0.31 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -34.13 374.58 -9.14 -43.28 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.05 Total: 1.02 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 0.25 Total: -21.90 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.72 Total: -39.69 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -2.45 Total: -34.20 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 30.24 SS G_CDS: -0.59 Total: 29.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.13 -9.14 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338990126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.489 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds