Wall clock time and date at job start Tue Mar 31 2020 12:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 S 1.65601 * 119.99998 * 165.00170 * 14 13 2 16 16 O 1.42099 * 104.27705 * 181.07357 * 15 14 13 17 17 O 1.42108 * 104.27438 * 308.93139 * 15 14 13 18 18 C 1.81399 * 104.44994 * 64.99904 * 15 14 13 19 19 C 1.53000 * 109.46861 * 179.97438 * 18 15 14 20 20 C 1.53004 * 109.47013 * 180.02562 * 19 18 15 21 21 H 1.09004 * 110.43164 * 305.69914 * 20 19 18 22 22 C 1.54808 * 110.48869 * 183.16138 * 20 19 18 23 23 C 1.55227 * 101.98389 * 220.52013 * 22 20 19 24 24 O 1.44379 * 103.57023 * 36.87701 * 23 22 20 25 25 C 1.43745 * 106.97259 * 320.01540 * 24 23 22 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 37 37 H 0.96994 * 119.99887 * 345.00254 * 14 13 2 38 38 H 1.08993 * 109.47380 * 299.99837 * 18 15 14 39 39 H 1.08997 * 109.46939 * 60.00356 * 18 15 14 40 40 H 1.09000 * 109.47510 * 300.00112 * 19 18 15 41 41 H 1.08997 * 109.46888 * 60.00527 * 19 18 15 42 42 H 1.09001 * 110.90566 * 338.63581 * 22 20 19 43 43 H 1.08992 * 110.91435 * 102.24280 * 22 20 19 44 44 H 1.09008 * 110.51623 * 278.37665 * 23 22 20 45 45 H 1.09001 * 110.77955 * 155.49896 * 23 22 20 46 46 H 1.09008 * 109.87685 * 267.08709 * 25 24 23 47 47 H 1.08998 * 110.00493 * 146.00901 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 1.4316 0.1374 4.8057 9 14 2.9443 -2.0010 3.9033 10 1 4.3721 -1.5950 3.9494 11 1 2.5928 -2.7170 5.1558 12 1 2.7221 -2.8981 2.7410 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 16 2.2318 -0.3494 -3.9213 16 8 1.5364 0.5045 -4.8194 17 8 3.6282 -0.2018 -3.7029 18 6 1.8182 -2.0857 -4.2446 19 6 2.3979 -2.5047 -5.5972 20 6 2.0486 -3.9691 -5.8702 21 1 2.3754 -4.5989 -5.0428 22 6 2.6913 -4.4412 -7.1971 23 6 1.5580 -5.3031 -7.8154 24 8 0.3550 -4.5924 -7.4517 25 6 0.5336 -4.1277 -6.1032 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2492 34 1 1.6659 -0.1940 5.6868 35 1 3.1301 -0.7207 -1.2494 36 1 1.6767 -1.7488 -1.2493 37 1 0.8300 0.6135 -2.3730 38 1 2.2397 -2.7121 -3.4586 39 1 0.7348 -2.2040 -4.2618 40 1 1.9761 -1.8783 -6.3831 41 1 3.4813 -2.3863 -5.5804 42 1 2.9277 -3.5921 -7.8384 43 1 3.5802 -5.0424 -7.0066 44 1 1.5589 -6.3033 -7.3819 45 1 1.6598 -5.3558 -8.8994 46 1 0.1252 -4.8564 -5.4029 47 1 0.0356 -3.1672 -5.9708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338990126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:46 Heat of formation + Delta-G solvation = -169.195293 kcal Electronic energy + Delta-G solvation = -25626.031642 eV Core-core repulsion = 21934.074442 eV Total energy + Delta-G solvation = -3691.957200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.44661 -39.21915 -38.11461 -37.00054 -35.82461 -35.15065 -33.71003 -31.86266 -29.57956 -29.40796 -27.93660 -27.16272 -25.37760 -24.16039 -23.19366 -21.38199 -20.25908 -19.81623 -18.84949 -18.52590 -17.73507 -17.54445 -17.05557 -16.74836 -16.25342 -15.88575 -15.78074 -15.62376 -15.32076 -15.13619 -14.63527 -14.30687 -14.14970 -14.01102 -13.70976 -13.52113 -13.22242 -13.19416 -13.07590 -12.96361 -12.93681 -12.69785 -12.62264 -12.49803 -12.32728 -12.24790 -12.09790 -11.77949 -11.69111 -11.60206 -11.51682 -11.36062 -11.08822 -10.86435 -10.66730 -10.60963 -10.24593 -8.18252 -6.18935 -0.69403 1.41470 1.41979 1.52583 1.79912 2.43346 2.81753 3.03418 3.17660 3.27051 3.38100 3.66532 3.81109 3.91441 3.93625 4.02997 4.14797 4.22291 4.27811 4.37937 4.47961 4.53405 4.54375 4.74177 4.78356 4.79846 4.80723 4.85582 4.89479 4.92884 4.99760 5.01779 5.08120 5.14455 5.17143 5.23766 5.37622 5.46336 5.48447 5.61512 5.74533 5.82968 5.94706 6.12992 6.43490 6.89179 7.43631 8.97920 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.002921 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.699825 B = 9583.568974 C =10380.733962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.056 4.056 3 C -0.129 4.129 4 C -0.006 4.006 5 C -0.503 4.503 6 H 0.043 0.957 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.237 1.237 13 C 0.123 3.877 14 N -1.113 6.113 15 S 2.614 3.386 16 O -0.995 6.995 17 O -0.995 6.995 18 C -0.613 4.613 19 C -0.112 4.112 20 C -0.111 4.111 21 H 0.106 0.894 22 C -0.154 4.154 23 C 0.038 3.962 24 O -0.408 6.408 25 C 0.038 3.962 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.016 0.984 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.420 0.580 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -12.396 -24.970 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.044 4.044 5 C -0.541 4.541 6 H 0.062 0.938 7 C -0.197 4.197 8 N -0.600 5.600 9 Si 0.765 3.235 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.160 1.160 13 C -0.003 4.003 14 N -0.874 5.874 15 S 2.712 3.288 16 O -0.986 6.986 17 O -0.985 6.985 18 C -0.745 4.745 19 C -0.151 4.151 20 C -0.131 4.131 21 H 0.124 0.876 22 C -0.192 4.192 23 C -0.038 4.038 24 O -0.328 6.328 25 C -0.039 4.039 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.257 0.743 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.777 -11.840 -25.452 28.127 hybrid contribution -0.098 -0.360 1.392 1.441 sum 1.680 -12.200 -24.060 27.028 Atomic orbital electron populations 1.21723 0.94094 1.01862 1.00705 1.20502 0.96405 0.95383 0.93479 1.21738 1.00153 0.96284 1.00480 1.19631 0.95954 0.96189 0.92671 1.21438 1.30109 1.12071 0.90521 0.93848 1.25957 0.97678 1.00334 0.95770 1.70075 1.48460 1.42939 0.98487 0.85805 0.79041 0.80400 0.78255 1.20096 1.21953 1.16007 1.21494 0.99198 0.96192 0.83396 1.55385 1.53063 1.56484 1.22481 1.04602 0.73441 0.78415 0.72377 1.93553 1.75173 1.65344 1.64531 1.93558 1.33570 1.86572 1.84795 1.30518 1.13655 1.22723 1.07643 1.21505 1.02345 0.97775 0.93490 1.22526 0.95100 0.95775 0.99708 0.87625 1.23324 0.99296 1.00828 0.95728 1.23786 0.82910 0.95513 1.01555 1.88856 1.39594 1.73670 1.30641 1.23488 0.96065 1.00457 0.83879 0.94519 0.91723 0.92134 0.93852 0.92263 0.94296 0.96558 0.95183 0.93031 0.90830 0.88892 0.74332 0.82081 0.82473 0.90239 0.89140 0.90229 0.88095 0.91178 0.88126 0.91221 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -1.87 0.55 -52.18 -0.03 -1.89 16 3 C -0.13 -4.58 8.05 71.98 0.58 -4.00 16 4 C -0.01 -0.27 3.11 29.85 0.09 -0.18 16 5 C -0.50 -26.81 8.20 25.60 0.21 -26.60 16 6 H 0.04 2.56 5.92 -2.91 -0.02 2.54 16 7 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 8 N -0.96 -58.99 13.96 21.45 0.30 -58.69 16 9 Si 0.94 42.51 27.47 68.60 1.88 44.39 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 13 C 0.12 3.03 5.02 86.38 0.43 3.47 16 14 N -1.11 -23.88 5.22 -187.48 -0.98 -24.86 16 15 S 2.61 54.52 5.46 -56.49 -0.31 54.21 16 16 O -1.00 -26.98 18.08 -127.65 -2.31 -29.29 16 17 O -0.99 -28.32 17.50 -127.65 -2.23 -30.55 16 18 C -0.61 -6.94 5.91 71.98 0.43 -6.52 16 19 C -0.11 -1.32 4.42 30.60 0.14 -1.19 16 20 C -0.11 -1.12 3.06 -9.80 -0.03 -1.15 16 21 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 22 C -0.15 -1.40 6.73 31.98 0.22 -1.19 16 23 C 0.04 0.42 7.72 72.75 0.56 0.99 16 24 O -0.41 -7.16 11.52 -148.98 -1.72 -8.88 16 25 C 0.04 0.49 6.94 72.35 0.50 0.99 16 26 H 0.04 1.40 6.62 -2.39 -0.02 1.38 16 27 H 0.06 1.60 6.60 -2.39 -0.02 1.58 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.77 7.20 -2.39 -0.02 1.76 16 31 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 32 H 0.02 0.67 7.57 -2.39 -0.02 0.66 16 33 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.07 1.89 7.69 -2.39 -0.02 1.87 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.42 8.62 6.44 -96.75 -0.62 8.00 16 38 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.16 1.18 6.98 -2.39 -0.02 1.16 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.76 7.87 -2.39 -0.02 0.74 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.09 1.08 6.82 -2.39 -0.02 1.07 16 Total: -1.00 -76.58 374.58 -0.95 -77.53 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.27 Total: 16.42 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 4.14 Total: -40.28 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -0.68 Total: -83.55 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -6.26 Total: -68.72 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Atomic # 16 Polarization: 54.52 SS G_CDS: -0.31 Total: 54.21 kcal Total: -76.58 -0.95 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338990126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.667 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds