Wall clock time and date at job start Tue Mar 31 2020 13:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47157 * 2 1 4 4 C 1.52996 * 109.47196 * 120.00055 * 2 1 3 5 5 H 1.09000 * 109.47143 * 294.12514 * 4 2 1 6 6 O 1.42906 * 109.47221 * 54.12150 * 4 2 1 7 7 C 1.52995 * 109.47322 * 174.12298 * 4 2 1 8 8 C 1.52998 * 115.55451 * 304.76701 * 7 4 2 9 9 N 1.46493 * 109.47493 * 184.81962 * 8 7 4 10 10 S 1.65604 * 119.99817 * 164.99697 * 9 8 7 11 11 O 1.42103 * 104.27794 * 181.07356 * 10 9 8 12 12 O 1.42095 * 104.28029 * 308.93285 * 10 9 8 13 13 C 1.81406 * 104.44815 * 65.00571 * 10 9 8 14 14 C 1.53002 * 109.47249 * 179.97438 * 13 10 9 15 15 C 1.52999 * 109.47094 * 180.02562 * 14 13 10 16 16 C 1.50693 * 109.46959 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00247 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99950 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00058 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46969 * 59.99947 * 20 18 16 22 22 H 1.48495 * 109.46998 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47050 * 300.00375 * 20 18 16 24 24 C 1.53004 * 117.49749 * 90.43836 * 7 4 2 25 25 C 1.53001 * 117.49969 * 159.09371 * 7 4 2 26 26 H 1.09005 * 109.47148 * 293.72890 * 1 2 3 27 27 H 1.09001 * 109.47407 * 53.72819 * 1 2 3 28 28 H 1.08996 * 109.47410 * 173.72937 * 1 2 3 29 29 H 1.08998 * 109.46896 * 239.99951 * 2 1 3 30 30 H 1.09000 * 109.47181 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47098 * 299.99995 * 3 2 1 32 32 H 1.08998 * 109.47257 * 60.00172 * 3 2 1 33 33 H 0.96707 * 113.99287 * 60.00330 * 6 4 2 34 34 H 1.09005 * 109.46915 * 64.81925 * 8 7 4 35 35 H 1.08996 * 109.47012 * 304.82675 * 8 7 4 36 36 H 0.96996 * 120.00347 * 345.00291 * 9 8 7 37 37 H 1.08999 * 109.47018 * 299.99936 * 13 10 9 38 38 H 1.09001 * 109.46898 * 59.99625 * 13 10 9 39 39 H 1.09007 * 109.46353 * 299.99746 * 14 13 10 40 40 H 1.08994 * 109.46806 * 59.99873 * 14 13 10 41 41 H 1.08999 * 109.47003 * 299.99900 * 15 14 13 42 42 H 1.09001 * 109.47068 * 59.99684 * 15 14 13 43 43 H 0.96997 * 119.99679 * 180.02562 * 19 18 16 44 44 H 1.09008 * 117.49711 * 215.00534 * 24 7 4 45 45 H 1.09001 * 117.49991 * 0.02562 * 24 7 4 46 46 H 1.08996 * 117.50136 * 359.97438 * 25 7 4 47 47 H 1.09001 * 117.49562 * 144.97816 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7651 -0.1503 2.1361 6 8 1.4543 -2.0228 1.3203 7 6 3.5628 -0.8504 1.1776 8 6 4.1089 -1.5323 -0.0785 9 7 5.5605 -1.6884 0.0425 10 16 6.3711 -2.7112 -0.9769 11 8 7.7254 -2.6256 -0.5553 12 8 5.6528 -3.9342 -0.8904 13 6 6.1676 -1.9683 -2.6193 14 6 6.8817 -2.8314 -3.6615 15 6 6.7106 -2.2044 -5.0466 16 6 7.4144 -3.0541 -6.0730 17 1 7.9318 -3.9518 -5.7680 18 6 7.3972 -2.6861 -7.4017 19 7 6.7668 -1.5933 -7.7732 20 14 8.2691 -3.7397 -8.6741 21 1 7.6834 -5.1044 -8.6721 22 1 8.1031 -3.1312 -10.0184 23 1 9.7144 -3.8210 -8.3431 24 6 4.3970 0.2773 1.7886 25 6 4.3148 -1.0807 2.4900 26 1 -0.3634 0.4136 0.9408 27 1 -0.3634 0.6080 -0.8285 28 1 -0.3634 -1.0215 -0.1122 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6575 -2.5874 0.5618 34 1 3.8808 -0.9213 -0.9519 35 1 3.6460 -2.5127 -0.1901 36 1 6.0469 -1.1928 0.7198 37 1 5.1066 -1.9084 -2.8620 38 1 6.5978 -0.9668 -2.6209 39 1 7.9427 -2.8908 -3.4185 40 1 6.4518 -3.8329 -3.6600 41 1 5.6497 -2.1445 -5.2898 42 1 7.1407 -1.2029 -5.0478 43 1 6.7544 -1.3346 -8.7079 44 1 5.3348 0.5336 1.2956 45 1 3.8608 1.1111 2.2419 46 1 3.7247 -1.1397 3.4045 47 1 5.1983 -1.7182 2.4585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342994007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:33 Heat of formation + Delta-G solvation = -152.369142 kcal Electronic energy + Delta-G solvation = -25733.259785 eV Core-core repulsion = 22042.032221 eV Total energy + Delta-G solvation = -3691.227564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.76713 -38.21001 -37.45688 -37.06144 -36.46658 -35.02264 -34.54485 -34.16221 -29.65619 -28.59107 -27.76389 -26.43520 -25.62140 -23.26107 -22.43572 -21.62716 -20.51836 -20.44705 -18.90072 -18.56825 -17.62783 -17.32720 -17.16134 -16.68381 -16.47238 -16.26987 -15.94437 -15.41475 -15.34107 -14.50139 -14.48766 -14.35250 -14.05374 -14.01839 -13.56853 -13.51467 -13.24212 -13.19786 -13.13251 -12.97004 -12.94774 -12.82513 -12.73433 -12.65140 -12.35402 -12.20268 -12.15385 -11.78826 -11.74627 -11.50804 -11.46939 -11.39467 -11.24304 -10.90748 -10.56890 -10.50704 -10.21297 -8.22695 -6.33529 -0.76162 1.40421 1.42580 1.50545 1.75608 2.39812 2.71378 2.75049 3.10946 3.20996 3.46715 3.60698 3.67998 3.75544 3.84307 3.95636 3.99986 4.10321 4.17436 4.34502 4.39635 4.45104 4.59266 4.65905 4.73502 4.80325 4.84943 4.87936 4.90361 4.97070 5.04857 5.06969 5.08473 5.16007 5.16653 5.26130 5.32369 5.45413 5.47795 5.53216 5.63376 5.79527 6.01446 6.19925 6.81790 6.81923 7.35774 8.88444 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.002993 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.926902 B = 9351.429181 C =10392.185213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C -0.148 4.148 4 C 0.159 3.841 5 H 0.102 0.898 6 O -0.571 6.571 7 C -0.167 4.167 8 C 0.137 3.863 9 N -1.109 6.109 10 S 2.631 3.369 11 O -0.993 6.993 12 O -0.988 6.988 13 C -0.608 4.608 14 C -0.107 4.107 15 C 0.032 3.968 16 C -0.554 4.554 17 H 0.059 0.941 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.157 4.157 25 C -0.173 4.173 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.384 0.616 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.423 0.577 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.005 0.995 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 7.072 20.487 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.205 4.205 4 C 0.099 3.901 5 H 0.120 0.880 6 O -0.378 6.378 7 C -0.169 4.169 8 C 0.012 3.988 9 N -0.872 5.872 10 S 2.726 3.274 11 O -0.984 6.984 12 O -0.978 6.978 13 C -0.739 4.739 14 C -0.147 4.147 15 C -0.006 4.006 16 C -0.592 4.592 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.785 3.215 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.194 4.194 25 C -0.210 4.210 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.261 0.739 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.123 0.877 45 H 0.131 0.869 46 H 0.118 0.882 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.902 6.511 21.056 24.589 hybrid contribution 0.627 0.108 -1.580 1.704 sum -10.276 6.619 19.476 22.993 Atomic orbital electron populations 1.21730 0.94588 1.01888 1.01673 1.21842 0.96641 0.97818 0.98463 1.21843 1.01908 0.94644 1.02119 1.21442 0.86510 0.83674 0.98467 0.87997 1.86555 1.75698 1.25992 1.49550 1.22277 0.95411 1.04922 0.94255 1.20983 0.78397 1.01444 0.98023 1.55382 1.16573 1.65130 1.50121 1.04175 0.72589 0.74155 0.76445 1.93538 1.36668 1.87079 1.81077 1.93535 1.73977 1.43875 1.86424 1.30495 1.11674 1.12834 1.18899 1.21317 0.99532 0.98293 0.95511 1.18950 0.95963 0.95218 0.90510 1.21724 1.34135 1.09985 0.93405 0.92239 1.25908 0.96145 0.96471 1.00883 1.70054 1.43921 1.25270 1.17602 0.85562 0.79239 0.78997 0.77667 1.19224 1.20622 1.19322 1.23180 1.01628 0.92127 1.02454 1.23084 1.02431 1.00021 0.95443 0.92798 0.92528 0.92699 0.90490 0.91493 0.92664 0.92120 0.76720 0.89118 0.89931 0.73900 0.83420 0.83492 0.91721 0.91500 0.97689 0.97882 0.92628 0.87719 0.86901 0.88161 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.88 71.98 0.64 -1.16 16 2 C -0.13 -1.53 2.47 -10.80 -0.03 -1.56 16 3 C -0.15 -1.58 8.79 71.98 0.63 -0.95 16 4 C 0.16 2.04 2.46 30.59 0.08 2.11 16 5 H 0.10 1.28 8.09 -2.39 -0.02 1.26 16 6 O -0.57 -9.15 12.55 -148.98 -1.87 -11.02 16 7 C -0.17 -2.16 1.41 -52.18 -0.07 -2.23 16 8 C 0.14 2.09 5.48 86.38 0.47 2.56 16 9 N -1.11 -20.13 5.24 -187.50 -0.98 -21.12 16 10 S 2.63 70.52 5.46 -56.49 -0.31 70.22 16 11 O -0.99 -33.13 18.08 -127.65 -2.31 -35.43 16 12 O -0.99 -32.49 17.50 -127.65 -2.23 -34.72 16 13 C -0.61 -17.01 6.07 71.98 0.44 -16.57 16 14 C -0.11 -4.23 5.16 30.59 0.16 -4.08 16 15 C 0.03 1.61 4.97 29.85 0.15 1.76 16 16 C -0.55 -31.22 9.11 25.60 0.23 -30.98 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C 0.00 0.25 5.46 84.66 0.46 0.71 16 19 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 20 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C -0.16 -1.66 7.79 30.62 0.24 -1.42 16 25 C -0.17 -2.35 9.47 30.62 0.29 -2.06 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.76 7.76 -2.39 -0.02 0.74 16 29 H 0.08 0.92 6.67 -2.39 -0.02 0.91 16 30 H 0.07 0.69 6.25 -2.39 -0.01 0.67 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.38 4.63 7.99 -74.05 -0.59 4.04 16 34 H 0.09 1.09 7.09 -2.38 -0.02 1.08 16 35 H 0.08 1.31 6.80 -2.39 -0.02 1.30 16 36 H 0.42 6.46 5.85 -96.75 -0.57 5.89 16 37 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.10 1.03 7.05 -2.38 -0.02 1.01 16 45 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.40 6.99 -2.39 -0.02 1.38 16 Total: -1.00 -74.27 384.79 -1.90 -76.17 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.20 Total: 18.74 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 3.69 Total: -53.88 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -0.70 Total: -75.88 kcal Atomic # 8 Polarization: -74.76 SS G_CDS: -6.41 Total: -81.17 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 70.52 SS G_CDS: -0.31 Total: 70.22 kcal Total: -74.27 -1.90 -76.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342994007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.203 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds