Wall clock time and date at job start Tue Mar 31 2020 13:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47217 * 2 1 4 4 C 1.52997 * 109.47279 * 120.00634 * 2 1 3 5 5 H 1.08996 * 109.47227 * 54.49369 * 4 2 1 6 6 O 1.42900 * 109.46894 * 294.49533 * 4 2 1 7 7 C 1.52997 * 109.47060 * 174.49720 * 4 2 1 8 8 C 1.52994 * 115.55112 * 303.02176 * 7 4 2 9 9 N 1.46497 * 109.47319 * 185.42514 * 8 7 4 10 10 S 1.65601 * 120.00181 * 164.99890 * 9 8 7 11 11 O 1.42101 * 104.27716 * 181.07432 * 10 9 8 12 12 O 1.42100 * 104.27682 * 308.92539 * 10 9 8 13 13 C 1.81394 * 104.45002 * 64.99876 * 10 9 8 14 14 C 1.53005 * 109.47068 * 180.02562 * 13 10 9 15 15 C 1.53003 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.47300 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99513 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00028 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00519 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47275 * 120.00108 * 20 18 16 23 23 H 1.48500 * 109.47210 * 239.99960 * 20 18 16 24 24 C 1.53004 * 117.49713 * 88.69082 * 7 4 2 25 25 C 1.53001 * 117.49901 * 157.34841 * 7 4 2 26 26 H 1.08992 * 109.47497 * 64.28916 * 1 2 3 27 27 H 1.09001 * 109.46999 * 184.29608 * 1 2 3 28 28 H 1.09005 * 109.46814 * 304.28685 * 1 2 3 29 29 H 1.09005 * 109.46595 * 240.00190 * 2 1 3 30 30 H 1.08998 * 109.47014 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47149 * 300.00756 * 3 2 1 32 32 H 1.09002 * 109.47363 * 60.00061 * 3 2 1 33 33 H 0.96700 * 114.00167 * 300.00472 * 6 4 2 34 34 H 1.09001 * 109.46779 * 305.42389 * 8 7 4 35 35 H 1.08993 * 109.47467 * 65.42113 * 8 7 4 36 36 H 0.97001 * 119.99788 * 344.99831 * 9 8 7 37 37 H 1.08999 * 109.47114 * 300.00191 * 13 10 9 38 38 H 1.08998 * 109.47128 * 60.00287 * 13 10 9 39 39 H 1.08999 * 109.47247 * 300.00034 * 14 13 10 40 40 H 1.08998 * 109.46974 * 60.00116 * 14 13 10 41 41 H 1.08999 * 109.47100 * 300.00142 * 15 14 13 42 42 H 1.08994 * 109.46969 * 59.99710 * 15 14 13 43 43 H 0.96995 * 120.00605 * 179.97438 * 19 18 16 44 44 H 1.09003 * 117.49663 * 215.00345 * 24 7 4 45 45 H 1.08994 * 117.50011 * 0.02562 * 24 7 4 46 46 H 1.09005 * 117.49815 * 359.97438 * 25 7 4 47 47 H 1.09001 * 117.49577 * 144.99945 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.5985 -1.7166 1.2997 6 8 1.6722 0.0226 2.4124 7 6 3.5638 -0.8422 1.1818 8 6 4.1152 -1.5553 -0.0544 9 7 5.5658 -1.7111 0.0782 10 16 6.3799 -2.7598 -0.9118 11 8 7.7321 -2.6663 -0.4851 12 8 5.6589 -3.9791 -0.7993 13 6 6.1865 -2.0567 -2.5727 14 6 6.9035 -2.9468 -3.5900 15 6 6.7398 -2.3541 -4.9910 16 6 7.4454 -3.2311 -5.9930 17 1 7.9596 -4.1218 -5.6634 18 6 7.4346 -2.8963 -7.3304 19 7 6.8089 -1.8114 -7.7318 20 14 8.3087 -3.9837 -8.5725 21 1 8.9307 -5.1353 -7.8711 22 1 7.3282 -4.4831 -9.5698 23 1 9.3615 -3.1975 -9.2644 24 6 4.3899 0.3079 1.7613 25 6 4.3164 -1.0305 2.5005 26 1 -0.3634 0.4458 -0.9258 27 1 -0.3633 -1.0248 0.0770 28 1 -0.3633 0.5790 0.8491 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 2.0308 0.9204 2.4348 34 1 3.6510 -2.5374 -0.1445 35 1 3.8929 -0.9654 -0.9435 36 1 6.0495 -1.2000 0.7458 37 1 5.1269 -2.0008 -2.8225 38 1 6.6186 -1.0564 -2.5964 39 1 7.9630 -3.0031 -3.3404 40 1 6.4709 -3.9470 -3.5662 41 1 5.6802 -2.2982 -5.2403 42 1 7.1719 -1.3538 -5.0151 43 1 6.8016 -1.5756 -8.6726 44 1 5.3263 0.5564 1.2617 45 1 3.8479 1.1503 2.1908 46 1 3.7261 -1.0678 3.4161 47 1 5.2045 -1.6624 2.4873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342994008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:38 Heat of formation + Delta-G solvation = -124.300024 kcal Electronic energy + Delta-G solvation = -25684.388535 eV Core-core repulsion = 21994.378140 eV Total energy + Delta-G solvation = -3690.010395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40049 -37.00046 -36.77229 -35.78264 -34.70145 -34.28933 -33.49790 -32.21138 -28.39646 -27.83770 -27.56178 -25.52146 -23.75518 -22.76543 -20.93192 -20.72399 -19.60387 -19.37645 -17.90136 -16.95925 -16.83578 -16.52170 -15.98561 -15.83484 -15.50693 -15.09335 -14.60128 -14.46483 -14.29433 -13.84456 -13.61902 -13.38700 -12.90657 -12.63033 -12.39378 -12.33298 -12.30522 -12.09714 -11.97773 -11.85839 -11.81563 -11.78266 -11.61894 -11.30900 -11.22552 -11.10217 -10.95611 -10.90232 -10.86341 -10.48720 -10.32814 -9.98809 -9.97887 -9.60143 -9.33000 -9.09830 -8.43255 -6.07984 -4.10996 0.41877 2.79030 3.27928 3.31131 3.35591 3.40537 3.88540 3.94923 4.21996 4.29096 4.35049 4.40820 4.47741 4.49802 4.63626 4.73478 4.86532 4.98920 5.14428 5.20002 5.22880 5.28780 5.29335 5.34744 5.35953 5.48021 5.53403 5.57353 5.65318 5.67757 5.75661 5.80402 5.84390 5.86049 5.97900 6.01275 6.23574 6.41561 6.79891 6.84698 7.22725 7.54417 7.63969 7.90102 8.30511 8.95484 9.53995 11.03257 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.002897 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.321970 B = 9662.748275 C =10804.304627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C -0.156 4.156 4 C 0.151 3.849 5 H 0.107 0.893 6 O -0.555 6.555 7 C -0.165 4.165 8 C 0.152 3.848 9 N -1.126 6.126 10 S 2.601 3.399 11 O -0.963 6.963 12 O -0.961 6.961 13 C -0.608 4.608 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.176 4.176 25 C -0.162 4.162 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.370 0.630 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.413 0.587 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 7.699 20.064 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.213 4.213 4 C 0.091 3.909 5 H 0.124 0.876 6 O -0.361 6.361 7 C -0.166 4.166 8 C 0.025 3.975 9 N -0.886 5.886 10 S 2.697 3.303 11 O -0.953 6.953 12 O -0.951 6.951 13 C -0.740 4.740 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.213 4.213 25 C -0.199 4.199 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.220 0.780 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.249 0.751 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.122 0.878 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.923 6.356 20.238 23.860 hybrid contribution 0.697 0.837 -1.161 1.592 sum -10.226 7.193 19.077 22.809 Atomic orbital electron populations 1.21775 0.94422 1.02065 1.01865 1.21819 0.96804 0.97322 0.98888 1.21932 1.01794 0.95622 1.02002 1.21358 0.89238 0.95638 0.84659 0.87552 1.86595 1.76524 1.30008 1.43003 1.22409 0.95132 1.03550 0.95553 1.20697 0.79467 1.00962 0.96347 1.55827 1.16148 1.64052 1.52527 1.05303 0.73547 0.74483 0.77012 1.93582 1.34727 1.86522 1.80519 1.93570 1.73386 1.42257 1.85848 1.30541 1.10767 1.12570 1.20133 1.21506 0.98681 0.97284 0.97087 1.19064 0.97610 0.96306 0.87793 1.21289 1.33655 1.09459 0.91996 0.92311 1.25018 0.95477 0.95283 0.98615 1.69963 1.42980 1.24620 1.15872 0.86500 0.79440 0.80648 0.81236 1.19587 1.20931 1.20938 1.23091 1.01909 0.92293 1.03977 1.23101 1.02370 0.99122 0.95272 0.92623 0.92594 0.92288 0.89784 0.91641 0.92154 0.92805 0.78035 0.89441 0.90867 0.75107 0.85517 0.85285 0.91570 0.91534 0.96119 0.96136 0.92948 0.88200 0.88600 0.87821 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.05 37.16 0.34 -0.64 16 2 C -0.13 -0.87 2.57 -90.62 -0.23 -1.10 16 3 C -0.16 -0.94 8.25 37.16 0.31 -0.63 16 4 C 0.15 1.08 2.91 -26.73 -0.08 1.01 16 5 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 6 O -0.55 -4.13 11.92 -35.23 -0.42 -4.55 16 7 C -0.16 -1.22 1.75 -154.51 -0.27 -1.49 16 8 C 0.15 1.33 5.68 -4.05 -0.02 1.31 16 9 N -1.13 -11.34 5.24 -10.62 -0.06 -11.40 16 10 S 2.60 36.71 5.46 -107.50 -0.59 36.12 16 11 O -0.96 -16.55 18.08 -57.54 -1.04 -17.59 16 12 O -0.96 -16.44 17.50 -57.54 -1.01 -17.44 16 13 C -0.61 -8.97 6.07 37.16 0.23 -8.74 16 14 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 15 C 0.03 0.76 4.97 -27.88 -0.14 0.63 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.18 -1.11 7.33 -26.69 -0.20 -1.30 16 25 C -0.16 -1.23 9.17 -26.69 -0.24 -1.48 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 29 H 0.08 0.58 6.74 -51.93 -0.35 0.23 16 30 H 0.06 0.39 6.14 -51.93 -0.32 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.27 6.71 -51.93 -0.35 -0.08 16 33 H 0.37 1.92 5.29 45.56 0.24 2.16 16 34 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 35 H 0.07 0.54 7.14 -51.93 -0.37 0.17 16 36 H 0.41 3.58 5.85 -34.47 -0.20 3.38 16 37 H 0.13 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.13 1.70 8.14 -51.93 -0.42 1.27 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 44 H 0.10 0.62 7.09 -51.93 -0.37 0.25 16 45 H 0.10 0.47 6.37 -51.93 -0.33 0.14 16 46 H 0.10 0.80 7.76 -51.93 -0.40 0.39 16 47 H 0.10 0.81 6.95 -51.93 -0.36 0.45 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -34.85 378.98 -9.94 -44.79 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.39 Total: 1.72 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -0.86 Total: -28.18 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.68 Total: -37.02 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -2.47 Total: -39.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 36.71 SS G_CDS: -0.59 Total: 36.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.85 -9.94 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342994008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.514 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds