Wall clock time and date at job start Tue Mar 31 2020 12:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.48638 * 300.00572 * 5 2 1 7 7 C 1.53085 * 109.48455 * 179.97438 * 5 2 1 8 8 C 1.53185 * 109.16524 * 182.42529 * 7 5 2 9 9 H 1.09007 * 109.60144 * 297.04854 * 8 7 5 10 10 N 1.46501 * 109.54575 * 176.83852 * 8 7 5 11 11 S 1.65597 * 120.00278 * 145.42885 * 10 8 7 12 12 O 1.42093 * 104.27658 * 181.06980 * 11 10 8 13 13 O 1.42096 * 104.27601 * 308.92670 * 11 10 8 14 14 C 1.81408 * 104.44872 * 64.99880 * 11 10 8 15 15 C 1.52998 * 109.47209 * 180.02562 * 14 11 10 16 16 C 1.50693 * 109.47318 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99925 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00221 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00183 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47028 * 59.99766 * 20 18 16 22 22 H 1.48495 * 109.47223 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46852 * 300.00382 * 20 18 16 24 24 C 1.53173 * 109.04714 * 56.95809 * 8 7 5 25 25 C 1.53085 * 109.16424 * 303.02986 * 24 8 7 26 26 O 1.42904 * 109.41503 * 57.60904 * 25 24 8 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.09004 * 109.52106 * 302.31589 * 7 5 2 37 37 H 1.08996 * 109.52714 * 62.50454 * 7 5 2 38 38 H 0.97006 * 119.99629 * 325.42701 * 10 8 7 39 39 H 1.09003 * 109.46590 * 300.00055 * 14 11 10 40 40 H 1.08997 * 109.46976 * 59.99822 * 14 11 10 41 41 H 1.09003 * 109.46628 * 299.99989 * 15 14 11 42 42 H 1.09001 * 109.46983 * 59.99414 * 15 14 11 43 43 H 0.97004 * 120.00045 * 179.97438 * 19 18 16 44 44 H 1.08993 * 109.52147 * 183.12366 * 24 8 7 45 45 H 1.09000 * 109.57464 * 62.96701 * 24 8 7 46 46 H 1.08996 * 109.48192 * 297.62326 * 25 24 8 47 47 H 1.09002 * 109.48202 * 177.58655 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 1.6768 -1.7489 -1.2495 7 6 3.5709 -0.7209 -1.2498 8 6 4.0735 -1.3907 -2.5324 9 1 3.7527 -2.4324 -2.5509 10 7 5.5364 -1.3277 -2.5775 11 16 6.3985 -2.5714 -3.2500 12 8 7.7559 -2.1806 -3.0954 13 8 5.8935 -3.7346 -2.6090 14 6 5.9266 -2.5540 -5.0016 15 6 6.6656 -3.6718 -5.7399 16 6 6.2732 -3.6579 -7.1948 17 1 5.5669 -2.9252 -7.5566 18 6 6.8157 -4.5803 -8.0641 19 7 7.6753 -5.4727 -7.6235 20 14 6.3297 -4.5625 -9.8677 21 1 6.6905 -3.2515 -10.4647 22 1 7.0469 -5.6475 -10.5844 23 1 4.8648 -4.7746 -9.9878 24 6 3.4912 -0.6538 -3.7424 25 6 1.9634 -0.6571 -3.6455 26 8 1.5642 -0.0475 -2.4162 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 3.9349 0.3058 -1.2086 37 1 3.9357 -1.2726 -0.3835 38 1 6.0001 -0.5573 -2.2134 39 1 4.8514 -2.7098 -5.0896 40 1 6.1914 -1.5917 -5.4396 41 1 7.7409 -3.5164 -5.6517 42 1 6.4005 -4.6340 -5.3016 43 1 8.0568 -6.1220 -8.2351 44 1 3.7991 -1.1577 -4.6586 45 1 3.8533 0.3742 -3.7529 46 1 1.5994 -1.6840 -3.6771 47 1 1.5449 -0.0970 -4.4816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343104230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:28 Heat of formation + Delta-G solvation = -174.990476 kcal Electronic energy + Delta-G solvation = -26302.094226 eV Core-core repulsion = 22609.885728 eV Total energy + Delta-G solvation = -3692.208498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00933 -38.22222 -37.53196 -37.05299 -36.47485 -35.90838 -33.16768 -31.87036 -31.14707 -28.11287 -28.04433 -27.61242 -25.25710 -24.62388 -23.52320 -21.62280 -20.46999 -19.72441 -19.12329 -18.30982 -17.68326 -17.16382 -16.97318 -16.73670 -16.54166 -15.98086 -15.65280 -15.43371 -15.24386 -15.06917 -14.59466 -14.47596 -14.22181 -14.13450 -13.74643 -13.26813 -13.21328 -13.14868 -13.10159 -12.91522 -12.86567 -12.80702 -12.59031 -12.55392 -12.32865 -12.24579 -12.18803 -12.01372 -11.94104 -11.71120 -11.61229 -11.44628 -11.15330 -11.01406 -10.63914 -10.45244 -10.36383 -8.25954 -6.40044 -0.70745 1.41112 1.44333 1.52444 1.79225 2.37978 2.77291 2.83921 3.07651 3.22157 3.59068 3.74751 3.79210 3.90396 4.01286 4.06312 4.09777 4.11224 4.26601 4.30150 4.41055 4.51606 4.64993 4.71221 4.78053 4.81792 4.82485 4.88160 4.93621 5.01981 5.07529 5.10842 5.13315 5.17314 5.25550 5.26752 5.27417 5.33370 5.39858 5.56016 5.59070 5.68227 6.05555 6.10550 6.34685 6.73636 7.30290 8.86184 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003200 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.435401 B = 8748.995586 C = 9648.079895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.146 4.146 5 C 0.099 3.901 6 H 0.058 0.942 7 C -0.151 4.151 8 C 0.138 3.862 9 H 0.083 0.917 10 N -1.100 6.100 11 S 2.615 3.385 12 O -1.000 7.000 13 O -0.998 6.998 14 C -0.587 4.587 15 C 0.021 3.979 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.262 1.262 24 C -0.183 4.183 25 C 0.061 3.939 26 O -0.380 6.380 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.425 0.575 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.005 0.995 42 H 0.006 0.994 43 H 0.267 0.733 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.389 14.812 14.461 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C -0.194 4.194 4 C -0.203 4.203 5 C 0.041 3.959 6 H 0.076 0.924 7 C -0.190 4.190 8 C 0.031 3.969 9 H 0.102 0.898 10 N -0.860 5.860 11 S 2.713 3.287 12 O -0.990 6.990 13 O -0.987 6.987 14 C -0.720 4.720 15 C -0.018 4.018 16 C -0.577 4.577 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.222 4.222 25 C -0.016 4.016 26 O -0.299 6.299 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.262 0.738 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.867 14.105 14.870 25.320 hybrid contribution 0.368 -0.216 -1.359 1.424 sum -14.499 13.890 13.511 24.201 Atomic orbital electron populations 1.21782 0.93725 1.01756 1.02037 1.20543 0.96452 0.96218 0.92664 1.21839 1.01017 0.94667 1.01911 1.21956 1.01511 1.00365 0.96468 1.22178 0.91727 0.95822 0.86181 0.92422 1.22610 0.96689 1.02838 0.96841 1.21042 0.78227 1.00700 0.96889 0.89847 1.55356 1.15463 1.38793 1.76394 1.04559 0.72963 0.73377 0.77844 1.93503 1.35827 1.82799 1.86867 1.93501 1.81132 1.50257 1.73850 1.30448 1.11632 1.09079 1.20791 1.18811 0.94539 0.91665 0.96760 1.21490 1.26622 1.16381 0.93252 0.90412 1.26114 0.94745 0.94800 1.04559 1.70097 1.30747 1.19022 1.37595 0.85377 0.78867 0.78131 0.77970 1.18786 1.21135 1.18646 1.22930 0.97566 1.03161 0.98568 1.22642 0.92731 0.99023 0.87216 1.87906 1.74589 1.53872 1.13532 0.92664 0.91850 0.92912 0.92094 0.92352 0.92690 0.92455 0.92053 0.91133 0.88937 0.89587 0.73801 0.83915 0.83712 0.97658 0.97544 0.92414 0.89880 0.89132 0.92643 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.33 71.98 0.60 -1.24 16 2 C -0.06 -0.82 0.63 -52.18 -0.03 -0.85 16 3 C -0.14 -1.83 7.98 71.98 0.57 -1.26 16 4 C -0.15 -1.80 8.12 71.98 0.58 -1.21 16 5 C 0.10 1.66 1.90 30.62 0.06 1.72 16 6 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 7 C -0.15 -2.57 4.23 30.68 0.13 -2.44 16 8 C 0.14 2.89 2.78 45.11 0.13 3.02 16 9 H 0.08 1.94 7.49 -2.38 -0.02 1.92 16 10 N -1.10 -26.04 5.37 -168.88 -0.91 -26.95 16 11 S 2.62 91.73 5.44 -56.49 -0.31 91.42 16 12 O -1.00 -41.56 18.08 -127.65 -2.31 -43.87 16 13 O -1.00 -41.33 17.39 -127.65 -2.22 -43.55 16 14 C -0.59 -21.49 5.25 71.98 0.38 -21.11 16 15 C 0.02 1.09 4.98 29.85 0.15 1.24 16 16 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 17 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.94 -56.70 13.29 21.45 0.28 -56.41 16 20 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 C -0.18 -3.32 5.69 30.68 0.17 -3.15 16 25 C 0.06 1.02 6.84 72.01 0.49 1.51 16 26 O -0.38 -6.91 9.06 -148.98 -1.35 -8.26 16 27 H 0.05 0.85 7.68 -2.39 -0.02 0.83 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.75 6.38 -2.39 -0.02 0.74 16 32 H 0.05 0.85 7.68 -2.39 -0.02 0.83 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.76 6.49 -2.39 -0.02 0.74 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 1.40 6.31 -2.39 -0.02 1.39 16 37 H 0.09 1.45 6.57 -2.39 -0.02 1.43 16 38 H 0.43 8.11 8.80 -96.74 -0.85 7.26 16 39 H 0.14 4.49 6.72 -2.39 -0.02 4.47 16 40 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.08 1.56 5.86 -2.39 -0.01 1.55 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -73.95 374.52 -0.76 -74.71 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.10 Total: 20.76 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 3.93 Total: -52.65 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.62 Total: -83.36 kcal Atomic # 8 Polarization: -89.80 SS G_CDS: -5.88 Total: -95.68 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 91.73 SS G_CDS: -0.31 Total: 91.42 kcal Total: -73.95 -0.76 -74.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343104230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.283 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds