Wall clock time and date at job start Tue Mar 31 2020 12:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 6 6 H 1.08998 * 109.48007 * 180.02562 * 5 2 1 7 7 C 1.53087 * 109.47912 * 300.06026 * 5 2 1 8 8 C 1.53184 * 109.16448 * 177.59086 * 7 5 2 9 9 H 1.08995 * 109.61796 * 183.10917 * 8 7 5 10 10 N 1.46501 * 109.54117 * 62.87829 * 8 7 5 11 11 S 1.65602 * 119.99385 * 145.44617 * 10 8 7 12 12 O 1.42108 * 104.27604 * 181.07182 * 11 10 8 13 13 O 1.42097 * 104.28159 * 308.93222 * 11 10 8 14 14 C 1.81397 * 104.45087 * 65.00390 * 11 10 8 15 15 C 1.52993 * 109.47458 * 179.97438 * 14 11 10 16 16 C 1.50700 * 109.47260 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99815 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00436 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00000 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47146 * 89.99423 * 20 18 16 22 22 H 1.48500 * 109.47017 * 210.00160 * 20 18 16 23 23 H 1.48509 * 109.46781 * 329.99902 * 20 18 16 24 24 C 1.53180 * 109.02992 * 303.01700 * 8 7 5 25 25 C 1.53086 * 109.16332 * 56.98092 * 24 8 7 26 26 O 1.42902 * 109.41678 * 302.38594 * 25 24 8 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 34 34 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 35 35 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 36 36 H 1.09005 * 109.52455 * 297.49318 * 7 5 2 37 37 H 1.09001 * 109.52878 * 57.68364 * 7 5 2 38 38 H 0.96998 * 120.00376 * 325.44936 * 10 8 7 39 39 H 1.08997 * 109.47275 * 300.00180 * 14 11 10 40 40 H 1.09000 * 109.46928 * 59.99420 * 14 11 10 41 41 H 1.08997 * 109.47387 * 300.00556 * 15 14 11 42 42 H 1.09000 * 109.47161 * 60.00008 * 15 14 11 43 43 H 0.97000 * 120.00260 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.52637 * 297.06889 * 24 8 7 45 45 H 1.09004 * 109.57127 * 176.91428 * 24 8 7 46 46 H 1.09006 * 109.48021 * 182.40299 * 25 24 8 47 47 H 1.09000 * 109.49310 * 62.37591 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 1 3.1300 -0.7209 1.2497 7 6 1.5286 -0.0004 2.4994 8 6 1.9929 -0.7623 3.7445 9 1 1.5868 -0.2868 4.6372 10 7 3.4566 -0.7533 3.8071 11 16 4.2221 -0.6844 5.2739 12 8 5.6050 -0.6674 4.9470 13 8 3.6123 0.4149 5.9363 14 6 3.7800 -2.2435 6.0889 15 6 4.4353 -2.3007 7.4702 16 6 4.0675 -3.5956 8.1476 17 1 3.4303 -4.3069 7.6431 18 6 4.5444 -3.8723 9.4113 19 7 5.3207 -3.0064 10.0255 20 14 4.0890 -5.4778 10.2507 21 1 5.0960 -6.5157 9.9134 22 1 4.0593 -5.2763 11.7217 23 1 2.7494 -5.9176 9.7842 24 6 1.4925 -2.2077 3.6612 25 6 2.0053 -2.8432 2.3663 26 8 1.5637 -2.0685 1.2496 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.9268 1.0140 2.5235 37 1 0.4393 0.0353 2.4794 38 1 3.9772 -0.7876 2.9894 39 1 2.6970 -2.3023 6.1975 40 1 4.1306 -3.0809 5.4858 41 1 5.5183 -2.2420 7.3613 42 1 4.0850 -1.4632 8.0736 43 1 5.6558 -3.2010 10.9147 44 1 0.4026 -2.2166 3.6646 45 1 1.8641 -2.7726 4.5162 46 1 1.6171 -3.8581 2.2809 47 1 3.0948 -2.8708 2.3813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343104233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:40 Heat of formation + Delta-G solvation = -148.337674 kcal Electronic energy + Delta-G solvation = -26590.379047 eV Core-core repulsion = 22899.326301 eV Total energy + Delta-G solvation = -3691.052746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37938 -36.91338 -36.56825 -35.52579 -35.32630 -33.93761 -31.28140 -30.74273 -30.36963 -27.55114 -27.43335 -25.65704 -24.90580 -23.81891 -21.71130 -20.42154 -19.49488 -18.59961 -17.59020 -16.71194 -16.30603 -16.23912 -16.07310 -15.48899 -15.05408 -14.80900 -14.64526 -14.56173 -14.05888 -13.89991 -13.55486 -13.31067 -13.18008 -12.69807 -12.55304 -12.30647 -12.25237 -11.94440 -11.88989 -11.77559 -11.63409 -11.54924 -11.42932 -11.30099 -11.13623 -11.10229 -10.95954 -10.92293 -10.80896 -10.43641 -10.39914 -10.27528 -9.89014 -9.59829 -9.41641 -9.07272 -8.52705 -6.14774 -4.20554 0.75638 3.08679 3.24308 3.30724 3.33083 3.56227 4.20248 4.32056 4.35469 4.46672 4.59566 4.67061 4.74371 4.77107 4.87800 4.93949 5.05363 5.17442 5.20524 5.25867 5.37021 5.39635 5.44741 5.49744 5.54343 5.59592 5.63880 5.66444 5.70838 5.74576 5.79404 5.82936 5.88620 5.89746 5.98631 6.10388 6.16726 6.21347 6.46034 7.02449 7.10375 7.27126 7.33188 7.77906 8.14619 8.82813 9.44404 10.96255 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.003233 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.658324 B = 8659.387454 C = 9321.919673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.146 4.146 4 C -0.138 4.138 5 C 0.100 3.900 6 H 0.057 0.943 7 C -0.156 4.156 8 C 0.147 3.853 9 H 0.099 0.901 10 N -1.123 6.123 11 S 2.590 3.410 12 O -0.968 6.968 13 O -0.966 6.966 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.184 4.184 25 C 0.063 3.937 26 O -0.374 6.374 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 4.719 -20.983 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 C -0.203 4.203 4 C -0.196 4.196 5 C 0.042 3.958 6 H 0.075 0.925 7 C -0.194 4.194 8 C 0.039 3.961 9 H 0.117 0.883 10 N -0.880 5.880 11 S 2.688 3.312 12 O -0.958 6.958 13 O -0.956 6.956 14 C -0.724 4.724 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.223 4.223 25 C -0.013 4.013 26 O -0.293 6.293 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.243 0.757 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.393 5.461 -20.520 23.218 hybrid contribution -0.094 -1.443 0.468 1.520 sum -9.487 4.018 -20.052 22.544 Atomic orbital electron populations 1.21863 0.93950 1.02497 1.01351 1.20533 0.96572 0.94824 0.94076 1.21953 1.01280 0.94809 1.02303 1.21809 1.00698 1.00916 0.96133 1.22064 0.97169 0.82563 0.93990 0.92490 1.22569 1.02652 1.00225 0.94000 1.20826 0.79611 0.95476 1.00188 0.88299 1.55965 1.14292 1.92431 1.25326 1.05623 0.73822 0.78281 0.73496 1.93555 1.31813 1.88034 1.82411 1.93542 1.77783 1.49843 1.74445 1.30545 1.10887 1.18578 1.12348 1.18958 0.96103 0.99870 0.86133 1.20990 1.31457 1.02669 1.00868 0.92039 1.25069 0.94894 0.97226 0.97285 1.69951 1.33223 1.35276 1.14367 0.86473 0.78898 0.83234 0.78694 1.20469 1.21005 1.19750 1.22863 1.02558 0.96966 0.99900 1.22512 0.98890 0.94818 0.85127 1.87896 1.74175 1.22239 1.44974 0.92470 0.93028 0.91729 0.92421 0.92152 0.91976 0.91743 0.92883 0.92920 0.89755 0.89384 0.75698 0.86189 0.86071 0.94874 0.94846 0.92505 0.89717 0.89511 0.88726 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.98 37.16 0.30 -0.77 16 2 C -0.06 -0.48 0.63 -154.51 -0.10 -0.58 16 3 C -0.15 -1.06 8.12 37.16 0.30 -0.75 16 4 C -0.14 -1.09 8.33 37.16 0.31 -0.78 16 5 C 0.10 0.92 1.71 -26.68 -0.05 0.87 16 6 H 0.06 0.54 6.70 -51.93 -0.35 0.19 16 7 C -0.16 -1.44 4.38 -26.59 -0.12 -1.56 16 8 C 0.15 1.61 3.05 -67.74 -0.21 1.40 16 9 H 0.10 1.14 7.49 -51.93 -0.39 0.75 16 10 N -1.12 -14.01 4.76 -4.73 -0.02 -14.04 16 11 S 2.59 45.10 5.44 -107.50 -0.58 44.52 16 12 O -0.97 -19.83 18.08 -57.54 -1.04 -20.87 16 13 O -0.97 -19.65 17.39 -57.54 -1.00 -20.65 16 14 C -0.59 -10.85 5.10 37.15 0.19 -10.66 16 15 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 16 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 20 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.18 -1.83 5.81 -26.59 -0.15 -1.98 16 25 C 0.06 0.61 6.68 37.20 0.25 0.86 16 26 O -0.37 -3.79 9.06 -35.23 -0.32 -4.11 16 27 H 0.06 0.42 6.38 -51.93 -0.33 0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 6.49 -51.93 -0.34 0.11 16 33 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.77 6.57 -51.93 -0.34 0.43 16 37 H 0.09 0.74 6.31 -51.93 -0.33 0.41 16 38 H 0.41 4.45 7.05 -34.47 -0.24 4.21 16 39 H 0.12 1.95 6.84 -51.93 -0.36 1.59 16 40 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.90 5.76 -51.93 -0.30 0.60 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.51 7.64 -51.93 -0.40 0.12 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -33.98 370.29 -9.43 -43.41 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.93 Total: 2.06 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 0.17 Total: -26.30 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.71 Total: -39.60 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.36 Total: -45.63 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 45.10 SS G_CDS: -0.58 Total: 44.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.98 -9.43 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343104233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.928 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds