Wall clock time and date at job start Tue Mar 31 2020 12:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47377 * 2 1 4 4 C 1.52999 * 109.46955 * 240.00026 * 2 1 3 5 5 C 1.52998 * 109.47259 * 296.74782 * 4 2 1 6 6 H 1.09001 * 109.47161 * 56.05993 * 5 4 2 7 7 C 1.53004 * 109.47392 * 176.06034 * 5 4 2 8 8 N 1.46504 * 109.47346 * 185.00240 * 7 5 4 9 9 C 1.34771 * 119.99803 * 179.97438 * 8 7 5 10 10 O 1.21582 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.47650 * 119.99806 * 179.97438 * 9 8 7 12 12 C 1.40018 * 119.89343 * 359.73331 * 11 9 8 13 13 C 1.36314 * 120.10240 * 179.71294 * 12 11 9 14 14 C 1.40889 * 119.89286 * 0.57582 * 13 12 11 15 15 C 1.41114 * 120.10137 * 179.67046 * 14 13 12 16 16 H 1.07999 * 119.99517 * 206.71364 * 15 14 13 17 17 C 1.40223 * 119.99663 * 26.71909 * 15 14 13 18 18 N 1.30639 * 120.00391 * 16.71676 * 17 15 14 19 19 Si 1.86803 * 119.99454 * 196.71447 * 17 15 14 20 20 H 1.48495 * 109.47214 * 90.00423 * 19 17 15 21 21 H 1.48505 * 109.46976 * 210.00112 * 19 17 15 22 22 H 1.48494 * 109.47561 * 330.00157 * 19 17 15 23 23 C 1.40890 * 119.79227 * 359.69832 * 14 13 12 24 24 C 1.36311 * 119.89309 * 359.97438 * 23 14 13 25 25 C 1.50703 * 109.47349 * 296.05595 * 5 4 2 26 26 O 1.20816 * 119.99903 * 324.95355 * 25 5 4 27 27 O 1.34227 * 119.99933 * 144.94362 * 25 5 4 28 28 H 1.09001 * 109.46897 * 59.99762 * 1 2 3 29 29 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47238 * 300.00094 * 1 2 3 31 31 H 1.09003 * 109.47369 * 120.00467 * 2 1 3 32 32 H 1.08999 * 109.46879 * 295.85967 * 3 2 1 33 33 H 1.09002 * 109.46930 * 55.86297 * 3 2 1 34 34 H 1.09002 * 109.46857 * 175.86279 * 3 2 1 35 35 H 1.09004 * 109.47477 * 56.74593 * 4 2 1 36 36 H 1.09000 * 109.47134 * 176.74971 * 4 2 1 37 37 H 1.09002 * 109.46491 * 304.99596 * 7 5 4 38 38 H 1.08993 * 109.47381 * 64.99865 * 7 5 4 39 39 H 0.97003 * 119.99866 * 359.97438 * 8 7 5 40 40 H 1.07994 * 119.94488 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05252 * 180.24688 * 13 12 11 42 42 H 0.97004 * 120.00263 * 179.97438 * 18 17 15 43 43 H 1.07998 * 120.05133 * 179.97438 * 23 14 13 44 44 H 1.07995 * 119.94488 * 180.02562 * 24 23 14 45 45 H 0.96696 * 117.00118 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5978 -2.1854 -1.2090 6 1 0.5136 -2.2350 -1.1089 7 6 2.0228 -2.8823 -2.5032 8 7 1.4967 -4.2495 -2.5171 9 6 1.7463 -5.0569 -3.5670 10 8 2.4085 -4.6508 -4.5023 11 6 1.2165 -6.4350 -3.5808 12 6 0.4598 -6.9026 -2.4995 13 6 -0.0363 -8.1722 -2.5104 14 6 0.2237 -9.0183 -3.6066 15 6 -0.2818 -10.3357 -3.6193 16 1 0.2269 -11.1038 -4.1829 17 6 -1.4447 -10.6473 -2.9003 18 7 -2.2375 -9.6917 -2.4944 19 14 -1.8601 -12.4291 -2.5231 20 1 -1.2522 -12.8148 -1.2243 21 1 -3.3346 -12.5879 -2.4461 22 1 -1.3238 -13.3009 -3.5989 23 6 0.9905 -8.5451 -4.6896 24 6 1.4768 -7.2717 -4.6728 25 6 2.2429 -2.8729 -0.0333 26 8 3.3619 -2.5680 0.3054 27 8 1.5743 -3.8238 0.6378 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7385 1.9344 -0.9248 33 1 1.6174 1.9773 0.8506 34 1 3.1275 1.4433 0.0741 35 1 1.6297 -0.2422 -2.1383 36 1 3.1284 -0.6711 -1.2789 37 1 1.6287 -2.3326 -3.3580 38 1 3.1109 -2.9111 -2.5600 39 1 0.9686 -4.5736 -1.7708 40 1 0.2653 -6.2549 -1.6575 41 1 -0.6233 -8.5307 -1.6777 42 1 -3.0422 -9.9073 -1.9973 43 1 1.1928 -9.1902 -5.5318 44 1 2.0643 -6.9080 -5.5027 45 1 2.0291 -4.2360 1.3850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345976027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:06 Heat of formation + Delta-G solvation = -143.210286 kcal Electronic energy + Delta-G solvation = -26348.810624 eV Core-core repulsion = 22522.536267 eV Total energy + Delta-G solvation = -3826.274357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77229 -39.05559 -37.44868 -37.02713 -36.07852 -34.69659 -33.87011 -31.76391 -30.05499 -29.46544 -27.47915 -26.69123 -25.47995 -24.51564 -21.98344 -21.12327 -20.74651 -20.05215 -19.54385 -18.37414 -17.53769 -17.06503 -16.90147 -15.85797 -15.68084 -15.42032 -14.96504 -14.55224 -14.39816 -14.02939 -13.87604 -13.70569 -13.36032 -13.19335 -12.77321 -12.57567 -12.49892 -12.43496 -12.12435 -12.01219 -11.93814 -11.82999 -11.61010 -11.39411 -11.31243 -11.07477 -10.97490 -10.94978 -10.84833 -10.66477 -10.52717 -10.04536 -9.56217 -9.39312 -9.02506 -8.70726 -7.73692 -7.54815 -7.03885 -4.61960 2.06212 2.20418 2.86370 2.91028 2.95031 2.97618 3.01779 3.58926 3.73488 3.84363 4.35667 4.47278 4.54922 4.60785 4.81959 4.83583 5.00159 5.20693 5.35150 5.36791 5.42962 5.53994 5.56652 5.62384 5.64656 5.68990 5.77884 5.88959 6.02222 6.02888 6.06029 6.09160 6.29913 6.38861 6.75427 6.82026 6.82978 7.01592 7.11048 7.42389 7.62111 7.74999 7.76999 7.84553 8.05841 8.17176 8.38597 8.61730 8.73404 9.01294 9.88904 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.002667 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.140513 B =10497.023900 C =11246.865649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.095 4.095 6 H 0.112 0.888 7 C 0.133 3.867 8 N -0.747 5.747 9 C 0.573 3.427 10 O -0.574 6.574 11 C -0.284 4.284 12 C -0.062 4.062 13 C -0.175 4.175 14 C 0.130 3.870 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.773 5.773 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.237 4.237 24 C -0.022 4.022 25 C 0.486 3.514 26 O -0.512 6.512 27 O -0.514 6.514 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.286 0.714 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 13.897 8.092 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.140 4.140 5 C -0.114 4.114 6 H 0.130 0.870 7 C 0.009 3.991 8 N -0.402 5.402 9 C 0.368 3.632 10 O -0.455 6.455 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.195 4.195 14 C 0.126 3.874 15 C -0.472 4.472 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.397 5.397 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.257 4.257 24 C -0.041 4.041 25 C 0.328 3.672 26 O -0.400 6.400 27 O -0.325 6.325 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.546 14.510 7.309 16.320 hybrid contribution -0.333 -1.196 1.172 1.707 sum 1.213 13.314 8.481 15.833 Atomic orbital electron populations 1.21966 0.94945 1.02146 1.02080 1.21168 0.96029 0.96733 0.98008 1.21795 1.01166 0.95404 1.01850 1.21612 1.02758 0.90507 0.99129 1.21469 1.03088 0.95983 0.90910 0.86975 1.21148 0.99875 0.83569 0.94550 1.45999 1.57649 1.12834 1.23672 1.18596 0.78438 0.85632 0.80550 1.90639 1.41780 1.76855 1.36275 1.18882 1.15243 0.93660 1.01024 1.20487 0.96160 0.95983 0.95520 1.20942 1.04774 0.94063 0.99691 1.17802 0.87643 0.92607 0.89311 1.19844 1.07101 0.95484 1.24755 0.89704 1.26082 0.95435 1.00052 0.93115 1.69734 1.09475 1.34876 1.25585 0.86205 0.78202 0.81672 0.80166 1.18963 1.20027 1.18305 1.20738 1.09395 0.95933 0.99627 1.20367 0.95217 0.93139 0.95407 1.23356 0.84173 0.76686 0.82957 1.90703 1.19878 1.62845 1.66563 1.84551 1.50798 1.50944 1.46253 0.92228 0.92286 0.92603 0.91383 0.92446 0.92653 0.92517 0.89636 0.89913 0.89932 0.91085 0.76250 0.89212 0.86338 0.90246 0.88331 0.88070 0.72988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.92 37.16 0.33 -0.80 16 2 C -0.10 -0.83 2.79 -90.62 -0.25 -1.08 16 3 C -0.14 -1.04 9.19 37.16 0.34 -0.70 16 4 C -0.10 -0.91 3.93 -26.73 -0.10 -1.01 16 5 C -0.09 -1.00 2.17 -91.77 -0.20 -1.19 16 6 H 0.11 1.04 6.32 -51.93 -0.33 0.71 16 7 C 0.13 1.80 5.05 -4.04 -0.02 1.77 16 8 N -0.75 -12.30 5.30 -61.31 -0.32 -12.62 16 9 C 0.57 12.10 7.76 -12.42 -0.10 12.01 16 10 O -0.57 -13.55 16.32 5.29 0.09 -13.46 16 11 C -0.28 -6.44 5.89 -104.72 -0.62 -7.06 16 12 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 13 C -0.18 -4.25 8.62 -39.27 -0.34 -4.59 16 14 C 0.13 3.28 5.55 -106.80 -0.59 2.68 16 15 C -0.44 -10.96 9.04 -37.75 -0.34 -11.30 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 18 N -0.77 -18.37 11.02 55.56 0.61 -17.75 16 19 Si 0.91 17.16 29.59 -169.99 -5.03 12.13 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 23 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 24 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 25 C 0.49 5.81 5.88 36.01 0.21 6.02 16 26 O -0.51 -7.41 16.70 -18.74 -0.31 -7.72 16 27 O -0.51 -5.23 12.97 -39.25 -0.51 -5.74 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.65 7.06 -51.93 -0.37 0.29 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.40 6.08 5.82 -40.82 -0.24 5.84 16 40 H 0.09 1.68 6.37 -52.49 -0.33 1.35 16 41 H 0.12 2.90 6.27 -52.48 -0.33 2.57 16 42 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 44 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 45 H 0.41 2.68 9.10 45.56 0.41 3.10 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -30.35 374.01 -8.41 -38.76 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.67 Total: 13.14 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.90 Total: -12.37 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.29 Total: -30.38 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.74 Total: -26.92 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.35 -8.41 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345976027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.446 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds