Wall clock time and date at job start Tue Mar 31 2020 12:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47377 * 2 1 4 4 C 1.52999 * 109.46955 * 240.00026 * 2 1 3 5 5 C 1.52998 * 109.47259 * 296.74782 * 4 2 1 6 6 H 1.09001 * 109.47161 * 56.05993 * 5 4 2 7 7 C 1.53004 * 109.47392 * 176.06034 * 5 4 2 8 8 N 1.46504 * 109.47346 * 185.00240 * 7 5 4 9 9 C 1.34771 * 119.99803 * 179.97438 * 8 7 5 10 10 O 1.21582 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.47650 * 119.99806 * 179.97438 * 9 8 7 12 12 C 1.40018 * 119.89343 * 359.73331 * 11 9 8 13 13 C 1.36314 * 120.10240 * 179.71294 * 12 11 9 14 14 C 1.40889 * 119.89286 * 0.57582 * 13 12 11 15 15 C 1.41114 * 120.10137 * 179.67046 * 14 13 12 16 16 H 1.07999 * 119.99517 * 206.71364 * 15 14 13 17 17 C 1.40223 * 119.99663 * 26.71909 * 15 14 13 18 18 N 1.30639 * 120.00391 * 16.71676 * 17 15 14 19 19 Si 1.86803 * 119.99454 * 196.71447 * 17 15 14 20 20 H 1.48495 * 109.47214 * 90.00423 * 19 17 15 21 21 H 1.48505 * 109.46976 * 210.00112 * 19 17 15 22 22 H 1.48494 * 109.47561 * 330.00157 * 19 17 15 23 23 C 1.40890 * 119.79227 * 359.69832 * 14 13 12 24 24 C 1.36311 * 119.89309 * 359.97438 * 23 14 13 25 25 C 1.50703 * 109.47349 * 296.05595 * 5 4 2 26 26 O 1.20816 * 119.99903 * 324.95355 * 25 5 4 27 27 O 1.34227 * 119.99933 * 144.94362 * 25 5 4 28 28 H 1.09001 * 109.46897 * 59.99762 * 1 2 3 29 29 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47238 * 300.00094 * 1 2 3 31 31 H 1.09003 * 109.47369 * 120.00467 * 2 1 3 32 32 H 1.08999 * 109.46879 * 295.85967 * 3 2 1 33 33 H 1.09002 * 109.46930 * 55.86297 * 3 2 1 34 34 H 1.09002 * 109.46857 * 175.86279 * 3 2 1 35 35 H 1.09004 * 109.47477 * 56.74593 * 4 2 1 36 36 H 1.09000 * 109.47134 * 176.74971 * 4 2 1 37 37 H 1.09002 * 109.46491 * 304.99596 * 7 5 4 38 38 H 1.08993 * 109.47381 * 64.99865 * 7 5 4 39 39 H 0.97003 * 119.99866 * 359.97438 * 8 7 5 40 40 H 1.07994 * 119.94488 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05252 * 180.24688 * 13 12 11 42 42 H 0.97004 * 120.00263 * 179.97438 * 18 17 15 43 43 H 1.07998 * 120.05133 * 179.97438 * 23 14 13 44 44 H 1.07995 * 119.94488 * 180.02562 * 24 23 14 45 45 H 0.96696 * 117.00118 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5978 -2.1854 -1.2090 6 1 0.5136 -2.2350 -1.1089 7 6 2.0228 -2.8823 -2.5032 8 7 1.4967 -4.2495 -2.5171 9 6 1.7463 -5.0569 -3.5670 10 8 2.4085 -4.6508 -4.5023 11 6 1.2165 -6.4350 -3.5808 12 6 0.4598 -6.9026 -2.4995 13 6 -0.0363 -8.1722 -2.5104 14 6 0.2237 -9.0183 -3.6066 15 6 -0.2818 -10.3357 -3.6193 16 1 0.2269 -11.1038 -4.1829 17 6 -1.4447 -10.6473 -2.9003 18 7 -2.2375 -9.6917 -2.4944 19 14 -1.8601 -12.4291 -2.5231 20 1 -1.2522 -12.8148 -1.2243 21 1 -3.3346 -12.5879 -2.4461 22 1 -1.3238 -13.3009 -3.5989 23 6 0.9905 -8.5451 -4.6896 24 6 1.4768 -7.2717 -4.6728 25 6 2.2429 -2.8729 -0.0333 26 8 3.3619 -2.5680 0.3054 27 8 1.5743 -3.8238 0.6378 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7385 1.9344 -0.9248 33 1 1.6174 1.9773 0.8506 34 1 3.1275 1.4433 0.0741 35 1 1.6297 -0.2422 -2.1383 36 1 3.1284 -0.6711 -1.2789 37 1 1.6287 -2.3326 -3.3580 38 1 3.1109 -2.9111 -2.5600 39 1 0.9686 -4.5736 -1.7708 40 1 0.2653 -6.2549 -1.6575 41 1 -0.6233 -8.5307 -1.6777 42 1 -3.0422 -9.9073 -1.9973 43 1 1.1928 -9.1902 -5.5318 44 1 2.0643 -6.9080 -5.5027 45 1 2.0291 -4.2360 1.3850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345976027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:05 Heat of formation + Delta-G solvation = -160.853426 kcal Electronic energy + Delta-G solvation = -26349.575688 eV Core-core repulsion = 22522.536267 eV Total energy + Delta-G solvation = -3827.039421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74554 -40.66573 -38.94956 -38.07883 -37.01036 -35.94765 -35.65067 -32.99177 -31.68948 -31.29233 -28.17737 -28.00628 -26.67690 -25.60458 -23.61991 -22.79284 -21.80584 -21.36847 -20.58278 -19.35529 -19.31521 -18.56205 -17.83932 -17.33623 -16.94386 -16.69645 -15.97317 -15.90820 -15.73687 -15.43767 -15.06570 -14.86550 -14.66223 -14.41100 -14.34076 -13.90306 -13.67668 -13.58233 -13.23599 -13.22255 -13.06006 -12.86326 -12.80618 -12.61630 -12.58181 -12.51070 -12.36736 -11.80677 -11.73629 -11.65676 -11.53594 -11.42571 -11.35882 -11.13371 -10.73857 -10.15895 -9.57057 -9.39259 -8.77869 -6.47958 0.43004 1.11470 1.15299 1.39876 1.43917 1.53904 2.04215 2.11793 2.18393 2.26108 2.78785 3.45198 3.66773 3.68688 3.90749 4.04895 4.08842 4.26455 4.27561 4.31796 4.43711 4.45082 4.56245 4.69531 4.74401 4.83104 4.88351 4.93052 4.99177 5.04340 5.05451 5.12015 5.15469 5.29160 5.29969 5.41917 5.44925 5.48748 5.58857 5.60119 5.81451 5.93387 5.99978 6.23556 6.54501 6.63271 6.77933 6.88989 6.93197 7.38493 8.18014 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.002667 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.140513 B =10497.023900 C =11246.865649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.100 4.100 5 C -0.086 4.086 6 H 0.131 0.869 7 C 0.132 3.868 8 N -0.730 5.730 9 C 0.573 3.427 10 O -0.602 6.602 11 C -0.293 4.293 12 C -0.052 4.052 13 C -0.194 4.194 14 C 0.102 3.898 15 C -0.475 4.475 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.252 4.252 24 C -0.033 4.033 25 C 0.486 3.514 26 O -0.542 6.542 27 O -0.512 6.512 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.409 0.591 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.297 0.703 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 14.497 9.178 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.138 4.138 5 C -0.105 4.105 6 H 0.149 0.851 7 C 0.008 3.992 8 N -0.383 5.383 9 C 0.366 3.634 10 O -0.486 6.486 11 C -0.297 4.297 12 C -0.071 4.071 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.502 4.502 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.422 5.422 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.271 4.271 24 C -0.052 4.052 25 C 0.329 3.671 26 O -0.432 6.432 27 O -0.325 6.325 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.108 0.892 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 0.378 15.132 8.435 17.328 hybrid contribution 0.045 -1.301 0.862 1.562 sum 0.423 13.831 9.297 16.670 Atomic orbital electron populations 1.21962 0.94003 1.02226 1.02824 1.21130 0.96750 0.97013 0.96803 1.21788 1.00776 0.94861 1.02692 1.21637 1.02125 0.89567 1.00425 1.21478 1.04012 0.96341 0.88704 0.85087 1.21301 0.99067 0.82046 0.96752 1.45839 1.56552 1.13561 1.22347 1.18389 0.78231 0.85490 0.81243 1.90623 1.43083 1.77287 1.37634 1.19174 1.15039 0.94673 1.00864 1.20719 0.94708 0.95574 0.96119 1.20976 1.05817 0.95061 0.99487 1.18152 0.88403 0.93498 0.90027 1.20094 1.08278 0.95517 1.26307 0.89763 1.26888 0.94600 1.04343 0.92236 1.69751 1.09973 1.36949 1.25573 0.85117 0.78310 0.76003 0.79883 1.18351 1.18937 1.18254 1.20877 1.09907 0.96448 0.99890 1.20518 0.95400 0.93240 0.96060 1.23627 0.83741 0.76566 0.83139 1.90697 1.21191 1.63779 1.67506 1.84516 1.50779 1.50388 1.46836 0.91280 0.92492 0.92138 0.93046 0.91434 0.92019 0.93175 0.87707 0.91181 0.88782 0.92461 0.75289 0.85879 0.86925 0.89195 0.87789 0.87854 0.71177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.92 71.98 0.64 -1.23 16 2 C -0.10 -1.44 2.79 -10.80 -0.03 -1.47 16 3 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 4 C -0.10 -1.59 3.93 30.59 0.12 -1.47 16 5 C -0.09 -1.63 2.17 -11.54 -0.02 -1.65 16 6 H 0.13 2.03 6.32 -2.39 -0.02 2.01 16 7 C 0.13 3.34 5.05 86.38 0.44 3.77 16 8 N -0.73 -22.75 5.30 -466.15 -2.47 -25.22 16 9 C 0.57 23.71 7.76 86.73 0.67 24.38 16 10 O -0.60 -28.21 16.32 -3.98 -0.06 -28.28 16 11 C -0.29 -13.22 5.89 -19.93 -0.12 -13.34 16 12 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 13 C -0.19 -9.45 8.62 22.47 0.19 -9.25 16 14 C 0.10 5.27 5.55 -21.28 -0.12 5.15 16 15 C -0.47 -23.78 9.04 23.46 0.21 -23.56 16 16 H 0.08 4.07 7.90 -2.91 -0.02 4.04 16 17 C 0.04 1.76 5.14 85.35 0.44 2.20 16 18 N -0.80 -37.70 11.02 21.87 0.24 -37.46 16 19 Si 0.99 34.49 29.59 68.60 2.03 36.52 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 21 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 23 C -0.25 -12.42 9.73 22.47 0.22 -12.21 16 24 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 25 C 0.49 10.89 5.88 71.24 0.42 11.31 16 26 O -0.54 -15.31 16.70 21.99 0.37 -14.95 16 27 O -0.51 -9.38 12.97 -51.39 -0.67 -10.04 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.93 7.06 -2.39 -0.02 0.91 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.32 7.72 -2.39 -0.02 1.30 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.41 11.40 5.82 -92.71 -0.54 10.86 16 40 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 41 H 0.11 5.54 6.27 -2.91 -0.02 5.52 16 42 H 0.30 12.42 8.29 -92.70 -0.77 11.65 16 43 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 44 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 45 H 0.43 4.80 9.10 -74.06 -0.67 4.12 16 Total: -1.00 -65.56 374.01 3.40 -62.17 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.19 Total: 39.19 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.15 Total: -21.93 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -2.23 Total: -62.68 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.36 Total: -53.27 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -65.56 3.40 -62.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345976027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.688 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds