Wall clock time and date at job start Tue Mar 31 2020 12:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 C 1.52997 * 109.46938 * 120.00416 * 2 1 3 5 5 C 1.53001 * 109.47292 * 64.99720 * 4 2 1 6 6 H 1.09003 * 109.48072 * 304.97368 * 5 4 2 7 7 C 1.53089 * 109.47889 * 184.94627 * 5 4 2 8 8 C 1.53177 * 109.16384 * 182.41164 * 7 5 4 9 9 H 1.09009 * 109.61508 * 297.06186 * 8 7 5 10 10 N 1.46497 * 109.54749 * 176.84416 * 8 7 5 11 11 S 1.65599 * 120.00110 * 145.43815 * 10 8 7 12 12 O 1.42105 * 104.27797 * 181.07392 * 11 10 8 13 13 O 1.42101 * 104.27901 * 308.93100 * 11 10 8 14 14 C 1.81397 * 104.44825 * 65.00280 * 11 10 8 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00322 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99943 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00014 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99790 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47015 * 89.99720 * 20 18 16 22 22 H 1.48497 * 109.47108 * 209.99535 * 20 18 16 23 23 H 1.48496 * 109.47130 * 330.00106 * 20 18 16 24 24 C 1.53172 * 109.04125 * 56.97350 * 8 7 5 25 25 C 1.53099 * 109.16361 * 303.02590 * 24 8 7 26 26 O 1.42897 * 109.48143 * 65.00048 * 5 4 2 27 27 H 1.09002 * 109.47082 * 59.99628 * 1 2 3 28 28 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46888 * 300.00324 * 1 2 3 30 30 H 1.09008 * 109.46538 * 240.00039 * 2 1 3 31 31 H 1.08999 * 109.47082 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47335 * 300.00217 * 3 2 1 33 33 H 1.09000 * 109.46913 * 59.99943 * 3 2 1 34 34 H 1.09001 * 109.46879 * 304.99539 * 4 2 1 35 35 H 1.09000 * 109.47372 * 184.99911 * 4 2 1 36 36 H 1.08994 * 109.52851 * 62.50200 * 7 5 4 37 37 H 1.09005 * 109.52151 * 302.30702 * 7 5 4 38 38 H 0.96999 * 119.99844 * 325.44540 * 10 8 7 39 39 H 1.09004 * 109.47032 * 299.99803 * 14 11 10 40 40 H 1.09000 * 109.47124 * 60.00075 * 14 11 10 41 41 H 1.08995 * 109.47216 * 300.00010 * 15 14 11 42 42 H 1.09000 * 109.46805 * 60.00123 * 15 14 11 43 43 H 0.97002 * 119.99563 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.52161 * 62.92457 * 24 8 7 45 45 H 1.08995 * 109.52584 * 183.05366 * 24 8 7 46 46 H 1.08995 * 109.47891 * 177.58972 * 25 24 8 47 47 H 1.09002 * 109.47613 * 297.62286 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5561 -2.2709 1.0531 7 6 2.0366 -2.8898 2.4919 8 6 1.6829 -4.3773 2.3991 9 1 0.6038 -4.4910 2.2938 10 7 2.1317 -5.0645 3.6125 11 16 1.2486 -6.3241 4.2256 12 8 1.9592 -6.7152 5.3924 13 8 -0.0755 -5.8152 4.3104 14 6 1.3550 -7.6129 2.9535 15 6 0.5692 -8.8445 3.4082 16 6 0.6571 -9.9149 2.3511 17 1 1.2177 -9.7350 1.4457 18 6 0.0227 -11.1244 2.5403 19 7 0.0999 -12.0587 1.6180 20 14 -0.9463 -11.4358 4.1066 21 1 -2.3552 -11.0096 3.9101 22 1 -0.9082 -12.8841 4.4326 23 1 -0.3460 -10.6612 5.2224 24 6 2.3834 -4.9824 1.1787 25 6 1.9685 -4.2072 -0.0746 26 8 2.2978 -2.8264 0.0902 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6445 1.2952 36 1 1.4985 -2.4388 3.3254 37 1 3.1099 -2.7798 2.6476 38 1 2.9462 -4.7816 4.0570 39 1 0.9351 -7.2377 2.0202 40 1 2.3990 -7.8852 2.7987 41 1 0.9895 -9.2195 4.3414 42 1 -0.4748 -8.5724 3.5634 43 1 -0.3462 -12.9097 1.7513 44 1 3.4636 -4.9146 1.3080 45 1 2.0940 -6.0280 1.0739 46 1 2.4970 -4.6062 -0.9403 47 1 0.8938 -4.3091 -0.2258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346521170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:44 Heat of formation + Delta-G solvation = -153.101989 kcal Electronic energy + Delta-G solvation = -25869.004271 eV Core-core repulsion = 22177.744929 eV Total energy + Delta-G solvation = -3691.259342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.98440 -36.87721 -36.60101 -35.69056 -35.51610 -34.00448 -31.92228 -31.52381 -30.92426 -27.48212 -27.20263 -26.01070 -24.11805 -22.67701 -21.29071 -20.73356 -20.15785 -19.05930 -17.71067 -16.99269 -16.70998 -16.50632 -15.77373 -15.54216 -15.30130 -14.82660 -14.78118 -14.55667 -14.30623 -13.99518 -13.68355 -13.47726 -13.35705 -12.84880 -12.54942 -12.41671 -12.18746 -11.96454 -11.87191 -11.81034 -11.76555 -11.63579 -11.60618 -11.40601 -11.27717 -11.25215 -11.15333 -10.92056 -10.85373 -10.47789 -10.33417 -10.17834 -9.83367 -9.68226 -9.51303 -9.22530 -8.68963 -6.19299 -4.20705 0.61894 2.93695 3.24442 3.32034 3.36114 3.56740 4.07106 4.25777 4.33404 4.50533 4.52954 4.59700 4.67034 4.71467 4.82723 4.87515 4.95875 5.07725 5.12630 5.17587 5.31309 5.33430 5.38479 5.43935 5.46646 5.48268 5.49929 5.57680 5.61765 5.62614 5.70113 5.77719 5.83965 5.90363 5.94763 6.04698 6.14290 6.17515 6.26034 6.77740 6.88848 6.99339 7.05455 7.51719 8.33385 8.81460 9.40386 10.92990 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.002952 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.423355 B = 9483.856313 C =10058.585067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.106 4.106 5 C 0.089 3.911 6 H 0.066 0.934 7 C -0.152 4.152 8 C 0.147 3.853 9 H 0.094 0.906 10 N -1.119 6.119 11 S 2.588 3.412 12 O -0.967 6.967 13 O -0.967 6.967 14 C -0.584 4.584 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.185 4.185 25 C 0.063 3.937 26 O -0.376 6.376 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.413 0.587 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.267 0.733 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 24.181 -2.910 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.143 4.143 5 C 0.030 3.970 6 H 0.083 0.917 7 C -0.191 4.191 8 C 0.039 3.961 9 H 0.112 0.888 10 N -0.875 5.875 11 S 2.685 3.315 12 O -0.957 6.957 13 O -0.957 6.957 14 C -0.717 4.717 15 C -0.046 4.046 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.224 4.224 25 C -0.014 4.014 26 O -0.295 6.295 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.247 0.753 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.169 24.069 -2.283 24.534 hybrid contribution -0.045 -0.686 0.478 0.837 sum 4.125 23.383 -1.805 23.813 Atomic orbital electron populations 1.21921 0.95407 1.01896 1.01596 1.21081 0.95695 0.95831 0.98876 1.21842 1.00926 0.96103 1.01576 1.21669 1.01939 0.92272 0.98444 1.22190 0.96573 0.92639 0.85559 0.91666 1.22498 1.03197 0.94441 0.98954 1.20819 0.99217 0.92358 0.83683 0.88804 1.55801 1.41581 1.51107 1.38989 1.05648 0.74040 0.75339 0.76460 1.93563 1.73436 1.83031 1.45672 1.93549 1.37679 1.77874 1.86551 1.30407 1.10613 1.14447 1.16240 1.19413 0.94626 0.91761 0.98817 1.20831 1.33917 0.97060 1.04031 0.90400 1.24986 0.95800 0.95842 0.96477 1.69878 1.43603 1.05829 1.33968 0.86929 0.81165 0.78032 0.84350 1.19667 1.20740 1.18635 1.22947 1.02733 1.01461 0.95294 1.22557 1.00315 0.81138 0.97382 1.87922 1.69016 1.23121 1.49440 0.92817 0.92423 0.92815 0.90260 0.92752 0.92804 0.92878 0.90565 0.91019 0.90067 0.90338 0.75321 0.85707 0.85374 0.94923 0.95383 0.92359 0.89994 0.89472 0.88243 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.95 37.16 0.33 -0.74 16 2 C -0.10 -0.71 2.87 -90.62 -0.26 -0.97 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 4 C -0.11 -0.79 4.39 -26.73 -0.12 -0.91 16 5 C 0.09 0.78 2.51 -26.68 -0.07 0.71 16 6 H 0.07 0.57 6.35 -51.93 -0.33 0.24 16 7 C -0.15 -1.37 4.95 -26.59 -0.13 -1.50 16 8 C 0.15 1.59 2.78 -67.75 -0.19 1.40 16 9 H 0.09 1.08 7.49 -51.92 -0.39 0.69 16 10 N -1.12 -13.36 5.37 -4.74 -0.03 -13.39 16 11 S 2.59 42.84 5.44 -107.50 -0.58 42.26 16 12 O -0.97 -18.79 18.08 -57.54 -1.04 -19.83 16 13 O -0.97 -18.57 17.39 -57.54 -1.00 -19.57 16 14 C -0.58 -10.32 5.24 37.16 0.19 -10.13 16 15 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 16 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 20 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 24 C -0.19 -1.86 5.69 -26.59 -0.15 -2.01 16 25 C 0.06 0.60 6.84 37.21 0.25 0.85 16 26 O -0.38 -3.77 9.86 -35.23 -0.35 -4.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 6.46 -51.93 -0.34 0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.68 7.70 -51.92 -0.40 0.28 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.41 4.10 8.80 -34.47 -0.30 3.80 16 39 H 0.12 1.97 6.73 -51.92 -0.35 1.62 16 40 H 0.13 2.06 8.14 -51.92 -0.42 1.63 16 41 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 42 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.91 5.86 -51.93 -0.30 0.61 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -33.98 377.21 -9.80 -43.78 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.26 Total: 1.32 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -0.33 Total: -26.79 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.75 Total: -39.39 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.39 Total: -43.52 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 42.84 SS G_CDS: -0.58 Total: 42.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.98 -9.80 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346521170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.318 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds