Wall clock time and date at job start Tue Mar 31 2020 12:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 C 1.52997 * 109.46938 * 120.00416 * 2 1 3 5 5 C 1.53001 * 109.47292 * 64.99720 * 4 2 1 6 6 H 1.09003 * 109.48072 * 304.97368 * 5 4 2 7 7 C 1.53089 * 109.47889 * 184.94627 * 5 4 2 8 8 C 1.53177 * 109.16384 * 182.41164 * 7 5 4 9 9 H 1.09009 * 109.61508 * 297.06186 * 8 7 5 10 10 N 1.46497 * 109.54749 * 176.84416 * 8 7 5 11 11 S 1.65599 * 120.00110 * 145.43815 * 10 8 7 12 12 O 1.42105 * 104.27797 * 181.07392 * 11 10 8 13 13 O 1.42101 * 104.27901 * 308.93100 * 11 10 8 14 14 C 1.81397 * 104.44825 * 65.00280 * 11 10 8 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00322 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99943 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00014 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99790 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47015 * 89.99720 * 20 18 16 22 22 H 1.48497 * 109.47108 * 209.99535 * 20 18 16 23 23 H 1.48496 * 109.47130 * 330.00106 * 20 18 16 24 24 C 1.53172 * 109.04125 * 56.97350 * 8 7 5 25 25 C 1.53099 * 109.16361 * 303.02590 * 24 8 7 26 26 O 1.42897 * 109.48143 * 65.00048 * 5 4 2 27 27 H 1.09002 * 109.47082 * 59.99628 * 1 2 3 28 28 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46888 * 300.00324 * 1 2 3 30 30 H 1.09008 * 109.46538 * 240.00039 * 2 1 3 31 31 H 1.08999 * 109.47082 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47335 * 300.00217 * 3 2 1 33 33 H 1.09000 * 109.46913 * 59.99943 * 3 2 1 34 34 H 1.09001 * 109.46879 * 304.99539 * 4 2 1 35 35 H 1.09000 * 109.47372 * 184.99911 * 4 2 1 36 36 H 1.08994 * 109.52851 * 62.50200 * 7 5 4 37 37 H 1.09005 * 109.52151 * 302.30702 * 7 5 4 38 38 H 0.96999 * 119.99844 * 325.44540 * 10 8 7 39 39 H 1.09004 * 109.47032 * 299.99803 * 14 11 10 40 40 H 1.09000 * 109.47124 * 60.00075 * 14 11 10 41 41 H 1.08995 * 109.47216 * 300.00010 * 15 14 11 42 42 H 1.09000 * 109.46805 * 60.00123 * 15 14 11 43 43 H 0.97002 * 119.99563 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.52161 * 62.92457 * 24 8 7 45 45 H 1.08995 * 109.52584 * 183.05366 * 24 8 7 46 46 H 1.08995 * 109.47891 * 177.58972 * 25 24 8 47 47 H 1.09002 * 109.47613 * 297.62286 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5561 -2.2709 1.0531 7 6 2.0366 -2.8898 2.4919 8 6 1.6829 -4.3773 2.3991 9 1 0.6038 -4.4910 2.2938 10 7 2.1317 -5.0645 3.6125 11 16 1.2486 -6.3241 4.2256 12 8 1.9592 -6.7152 5.3924 13 8 -0.0755 -5.8152 4.3104 14 6 1.3550 -7.6129 2.9535 15 6 0.5692 -8.8445 3.4082 16 6 0.6571 -9.9149 2.3511 17 1 1.2177 -9.7350 1.4457 18 6 0.0227 -11.1244 2.5403 19 7 0.0999 -12.0587 1.6180 20 14 -0.9463 -11.4358 4.1066 21 1 -2.3552 -11.0096 3.9101 22 1 -0.9082 -12.8841 4.4326 23 1 -0.3460 -10.6612 5.2224 24 6 2.3834 -4.9824 1.1787 25 6 1.9685 -4.2072 -0.0746 26 8 2.2978 -2.8264 0.0902 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6445 1.2952 36 1 1.4985 -2.4388 3.3254 37 1 3.1099 -2.7798 2.6476 38 1 2.9462 -4.7816 4.0570 39 1 0.9351 -7.2377 2.0202 40 1 2.3990 -7.8852 2.7987 41 1 0.9895 -9.2195 4.3414 42 1 -0.4748 -8.5724 3.5634 43 1 -0.3462 -12.9097 1.7513 44 1 3.4636 -4.9146 1.3080 45 1 2.0940 -6.0280 1.0739 46 1 2.4970 -4.6062 -0.9403 47 1 0.8938 -4.3091 -0.2258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346521170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:43 Heat of formation + Delta-G solvation = -177.392448 kcal Electronic energy + Delta-G solvation = -25870.057585 eV Core-core repulsion = 22177.744929 eV Total energy + Delta-G solvation = -3692.312656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.73045 -38.22596 -37.38119 -37.06999 -36.40974 -35.90974 -33.50732 -32.56510 -31.84956 -28.09151 -27.96366 -27.70081 -24.92148 -23.54492 -22.98788 -21.53732 -20.74875 -20.34012 -19.40647 -18.49735 -17.70549 -17.26933 -17.07765 -16.71384 -16.38077 -16.12168 -15.78180 -15.51247 -15.34561 -15.14839 -14.82695 -14.74663 -14.20701 -14.02825 -13.81522 -13.27575 -13.20266 -13.15360 -13.09039 -13.03440 -13.00562 -12.95516 -12.75057 -12.45511 -12.27566 -12.23259 -12.15215 -12.05240 -11.85776 -11.69896 -11.51697 -11.42560 -11.26154 -11.00386 -10.84415 -10.45125 -10.38838 -8.36516 -6.41896 -0.73999 1.31524 1.33813 1.43424 1.73991 2.29244 2.72171 2.87771 2.97609 3.19875 3.58677 3.72676 3.79221 3.90063 3.99686 4.04645 4.08256 4.10963 4.20768 4.28766 4.40453 4.45322 4.54241 4.64981 4.72561 4.79584 4.84442 4.86460 4.89728 4.92476 5.02984 5.05500 5.07906 5.11360 5.16392 5.18069 5.21079 5.33538 5.40492 5.47257 5.52222 5.60279 6.08847 6.16842 6.34414 6.64266 7.22460 8.78848 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.002952 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.423355 B = 9483.856313 C =10058.585067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.103 4.103 5 C 0.086 3.914 6 H 0.065 0.935 7 C -0.147 4.147 8 C 0.139 3.861 9 H 0.088 0.912 10 N -1.100 6.100 11 S 2.619 3.381 12 O -0.994 6.994 13 O -0.991 6.991 14 C -0.589 4.589 15 C -0.017 4.017 16 C -0.525 4.525 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.939 5.939 20 Si 0.923 3.077 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.250 1.250 24 C -0.184 4.184 25 C 0.061 3.939 26 O -0.385 6.385 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.426 0.574 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 26.073 -2.010 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.140 4.140 5 C 0.028 3.972 6 H 0.083 0.917 7 C -0.186 4.186 8 C 0.032 3.968 9 H 0.106 0.894 10 N -0.860 5.860 11 S 2.715 3.285 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.721 4.721 15 C -0.056 4.056 16 C -0.564 4.564 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.579 5.579 20 Si 0.746 3.254 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.174 1.174 24 C -0.224 4.224 25 C -0.016 4.016 26 O -0.304 6.304 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.263 0.737 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.126 0.874 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.333 25.963 -1.381 26.358 hybrid contribution -0.033 -1.192 0.095 1.197 sum 4.300 24.770 -1.286 25.174 Atomic orbital electron populations 1.21917 0.95273 1.01560 1.02030 1.21048 0.95792 0.96309 0.98228 1.21820 1.00978 0.95424 1.02008 1.21672 1.02010 0.91373 0.98959 1.22292 0.96549 0.93305 0.85051 0.91743 1.22487 1.03926 0.92866 0.99352 1.21035 0.99071 0.93570 0.83161 0.89422 1.55351 1.41769 1.49415 1.39495 1.04505 0.73456 0.75199 0.75378 1.93523 1.73915 1.83826 1.47123 1.93519 1.39529 1.78256 1.86754 1.30412 1.10815 1.13098 1.17753 1.19375 0.95808 0.92930 0.97507 1.21160 1.32740 0.98281 1.04171 0.93025 1.25858 0.97126 0.95846 0.99689 1.70005 1.45232 1.06544 1.36133 0.86049 0.80183 0.78377 0.80775 1.18539 1.20036 1.17369 1.22937 1.03090 1.01099 0.95241 1.22618 1.00636 0.80976 0.97387 1.87921 1.69267 1.23291 1.49964 0.92605 0.93127 0.92189 0.91721 0.92663 0.92597 0.92240 0.89351 0.91013 0.89374 0.89381 0.73700 0.84079 0.83934 0.95056 0.95060 0.92161 0.89280 0.90088 0.87356 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.95 71.98 0.64 -1.29 16 2 C -0.10 -1.26 2.87 -10.79 -0.03 -1.29 16 3 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 4 C -0.10 -1.33 4.39 30.59 0.13 -1.19 16 5 C 0.09 1.36 2.51 30.62 0.08 1.43 16 6 H 0.06 1.03 6.35 -2.39 -0.02 1.02 16 7 C -0.15 -2.31 4.95 30.68 0.15 -2.15 16 8 C 0.14 2.73 2.78 45.11 0.13 2.85 16 9 H 0.09 1.87 7.49 -2.38 -0.02 1.85 16 10 N -1.10 -23.88 5.37 -168.90 -0.91 -24.78 16 11 S 2.62 82.48 5.44 -56.49 -0.31 82.17 16 12 O -0.99 -37.04 18.08 -127.65 -2.31 -39.34 16 13 O -0.99 -36.56 17.39 -127.65 -2.22 -38.78 16 14 C -0.59 -20.18 5.24 71.99 0.38 -19.81 16 15 C -0.02 -0.79 4.05 29.85 0.12 -0.66 16 16 C -0.52 -29.05 9.66 25.60 0.25 -28.80 16 17 H 0.05 3.04 7.99 -2.91 -0.02 3.01 16 18 C 0.01 0.77 5.47 84.66 0.46 1.23 16 19 N -0.94 -57.20 13.96 21.45 0.30 -56.90 16 20 Si 0.92 43.47 27.47 68.60 1.88 45.35 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 24 C -0.18 -3.39 5.69 30.68 0.17 -3.21 16 25 C 0.06 1.06 6.84 72.02 0.49 1.56 16 26 O -0.39 -7.14 9.86 -148.98 -1.47 -8.61 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.71 6.46 -2.39 -0.02 0.70 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 1.05 7.70 -2.38 -0.02 1.03 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.43 7.34 8.80 -96.75 -0.85 6.49 16 39 H 0.14 4.30 6.73 -2.39 -0.02 4.29 16 40 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 41 H 0.03 1.43 7.20 -2.39 -0.02 1.42 16 42 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.59 5.86 -2.39 -0.01 1.57 16 46 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.16 377.21 -1.35 -73.51 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.04 Total: 19.66 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 3.64 Total: -52.27 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -0.61 Total: -81.69 kcal Atomic # 8 Polarization: -80.74 SS G_CDS: -6.00 Total: -86.73 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Atomic # 16 Polarization: 82.48 SS G_CDS: -0.31 Total: 82.17 kcal Total: -72.16 -1.35 -73.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346521170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.879 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds