Wall clock time and date at job start Tue Mar 31 2020 12:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 C 1.52993 * 109.47255 * 120.00483 * 2 1 3 5 5 C 1.53010 * 109.47079 * 174.99444 * 4 2 1 6 6 H 1.09005 * 109.47655 * 55.02349 * 5 4 2 7 7 C 1.53103 * 109.49301 * 174.95769 * 5 4 2 8 8 C 1.53170 * 109.15835 * 177.50810 * 7 5 4 9 9 H 1.09010 * 109.54091 * 63.06705 * 8 7 5 10 10 N 1.46503 * 109.54535 * 183.24411 * 8 7 5 11 11 S 1.65600 * 120.00062 * 214.82696 * 10 8 7 12 12 O 1.42107 * 104.27629 * 308.92771 * 11 10 8 13 13 O 1.42102 * 104.27841 * 181.06908 * 11 10 8 14 14 C 1.81404 * 104.45074 * 64.99734 * 11 10 8 15 15 C 1.53000 * 109.46946 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00093 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 C 1.53175 * 109.11197 * 303.15664 * 8 7 5 25 25 C 1.53098 * 109.16226 * 56.93373 * 24 8 7 26 26 O 1.42898 * 109.47977 * 294.99756 * 5 4 2 27 27 H 1.09004 * 109.46492 * 299.99962 * 1 2 3 28 28 H 1.08997 * 109.47545 * 59.99328 * 1 2 3 29 29 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46492 * 240.00038 * 2 1 3 31 31 H 1.09001 * 109.47098 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.46889 * 300.00419 * 3 2 1 33 33 H 1.08998 * 109.46867 * 60.00320 * 3 2 1 34 34 H 1.08993 * 109.47535 * 55.00011 * 4 2 1 35 35 H 1.08997 * 109.47392 * 294.99362 * 4 2 1 36 36 H 1.09005 * 109.44869 * 57.64957 * 7 5 4 37 37 H 1.09001 * 109.59876 * 297.46369 * 7 5 4 38 38 H 0.96993 * 119.99757 * 34.81951 * 10 8 7 39 39 H 1.09002 * 109.47124 * 60.00022 * 14 11 10 40 40 H 1.09001 * 109.46975 * 300.00144 * 14 11 10 41 41 H 1.09001 * 109.47194 * 299.99756 * 15 14 11 42 42 H 1.08992 * 109.47399 * 59.99928 * 15 14 11 43 43 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.52670 * 176.83601 * 24 8 7 45 45 H 1.09000 * 109.52414 * 296.96431 * 24 8 7 46 46 H 1.08996 * 109.47845 * 62.37709 * 25 24 8 47 47 H 1.08992 * 109.47919 * 182.40822 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8312 1.1877 6 1 3.9957 0.1610 1.0529 7 6 4.0863 -1.4391 2.4926 8 6 5.6062 -1.6032 2.3986 9 1 6.0729 -0.6237 2.2931 10 7 6.1047 -2.2554 3.6121 11 16 7.5848 -1.8394 4.2273 12 8 8.4667 -1.9404 3.1175 13 8 7.7396 -2.6771 5.3647 14 6 7.3942 -0.1078 4.7333 15 6 8.7113 0.3986 5.3248 16 6 8.5527 1.8369 5.7457 17 1 7.6073 2.3396 5.6050 18 6 9.6147 2.5110 6.3104 19 7 10.7658 1.8987 6.4822 20 14 9.4184 4.2941 6.8315 21 1 8.3449 4.3960 7.8526 22 1 10.6964 4.7852 7.4069 23 1 9.0578 5.1182 5.6501 24 6 5.9431 -2.4654 1.1782 25 6 5.3502 -1.8159 -0.0750 26 8 3.9387 -1.6663 0.0900 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6055 -1.7198 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 3.6236 -2.4135 2.6494 37 1 3.8418 -0.7805 3.3261 38 1 5.5678 -2.9308 4.0551 39 1 6.6063 -0.0329 5.4828 40 1 7.1294 0.4971 3.8661 41 1 8.9765 -0.2063 6.1919 42 1 9.4989 0.3237 4.5751 43 1 11.5129 2.3728 6.8798 44 1 7.0253 -2.5401 1.0724 45 1 5.5202 -3.4616 1.3081 46 1 5.8044 -0.8367 -0.2263 47 1 5.5501 -2.4471 -0.9407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346521175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:54 Heat of formation + Delta-G solvation = -181.784491 kcal Electronic energy + Delta-G solvation = -25838.803367 eV Core-core repulsion = 22146.300258 eV Total energy + Delta-G solvation = -3692.503109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70987 -38.18333 -37.35015 -37.00016 -36.39632 -35.90168 -33.13867 -32.54060 -31.86240 -27.99916 -27.81088 -27.60301 -24.89765 -23.63662 -23.35135 -21.47837 -20.73303 -20.28318 -19.11027 -18.29731 -17.64772 -17.25809 -17.00603 -16.69753 -16.53349 -16.08707 -15.79717 -15.50144 -15.23124 -15.06911 -14.73297 -14.47493 -14.17596 -14.00982 -13.74370 -13.21731 -13.14297 -13.09751 -13.03874 -12.98703 -12.91088 -12.80549 -12.76118 -12.44367 -12.30346 -12.24824 -12.19427 -12.08303 -11.90807 -11.73477 -11.50527 -11.41533 -11.18676 -10.96478 -10.64230 -10.45379 -10.33998 -8.26270 -6.40549 -0.69445 1.40936 1.44255 1.52412 1.81068 2.37866 2.78942 2.88764 3.07245 3.25592 3.60389 3.73652 3.82425 3.96114 4.01561 4.08583 4.12225 4.15078 4.21905 4.30178 4.40497 4.44917 4.66561 4.74496 4.76264 4.80023 4.86571 4.88014 4.91650 4.93771 5.05528 5.13245 5.17550 5.19171 5.21881 5.26291 5.27315 5.34662 5.41557 5.53324 5.61580 5.67804 6.05395 6.11022 6.35406 6.73195 7.29845 8.85829 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.003398 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.660537 B = 8238.335080 C = 9817.046156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.103 4.103 5 C 0.085 3.915 6 H 0.066 0.934 7 C -0.151 4.151 8 C 0.143 3.857 9 H 0.087 0.913 10 N -1.101 6.101 11 S 2.617 3.383 12 O -0.993 6.993 13 O -1.001 7.001 14 C -0.588 4.588 15 C 0.021 3.979 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.262 1.262 24 C -0.175 4.175 25 C 0.064 3.936 26 O -0.386 6.386 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.425 0.575 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.005 0.995 42 H 0.007 0.993 43 H 0.267 0.733 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.286 -4.529 -13.369 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.140 4.140 5 C 0.027 3.973 6 H 0.084 0.916 7 C -0.190 4.190 8 C 0.036 3.964 9 H 0.105 0.895 10 N -0.861 5.861 11 S 2.714 3.286 12 O -0.983 6.983 13 O -0.991 6.991 14 C -0.720 4.720 15 C -0.018 4.018 16 C -0.579 4.579 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.214 4.214 25 C -0.013 4.013 26 O -0.305 6.305 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.262 0.738 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.383 -5.080 -13.458 24.948 hybrid contribution 0.347 0.937 0.865 1.322 sum -20.036 -4.143 -12.593 24.025 Atomic orbital electron populations 1.21824 0.94651 1.01811 1.01984 1.21040 0.95966 0.96036 0.98264 1.21922 1.00898 0.96013 1.02003 1.21673 0.91728 1.01654 0.98984 1.22310 0.96497 0.93387 0.85090 0.91576 1.22572 0.92858 1.04005 0.99590 1.21007 0.96327 0.95730 0.83374 0.89513 1.55402 1.39132 1.53970 1.37586 1.04557 0.73468 0.77535 0.73041 1.93506 1.64719 1.86870 1.53168 1.93504 1.85549 1.66163 1.53879 1.30348 1.07889 1.21684 1.12120 1.18808 0.90003 0.97804 0.95195 1.21501 0.98690 0.96656 1.41048 0.90478 1.26121 0.94748 1.03791 0.95564 1.70094 1.03242 1.39348 1.44762 0.85375 0.77643 0.78247 0.79071 1.18748 1.21091 1.18645 1.22759 1.02346 1.00891 0.95449 1.22605 0.80886 1.00626 0.97218 1.87913 1.22627 1.69936 1.50023 0.92314 0.92609 0.92641 0.91673 0.93043 0.92645 0.92261 0.91060 0.89280 0.89560 0.88528 0.73839 0.83795 0.84053 0.97675 0.97475 0.92392 0.90847 0.90161 0.92517 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.09 -1.27 2.87 -10.80 -0.03 -1.30 16 3 C -0.15 -2.00 8.95 71.98 0.64 -1.36 16 4 C -0.10 -1.34 4.39 30.60 0.13 -1.21 16 5 C 0.09 1.34 2.50 30.63 0.08 1.41 16 6 H 0.07 1.03 6.35 -2.38 -0.02 1.02 16 7 C -0.15 -2.33 4.96 30.69 0.15 -2.18 16 8 C 0.14 2.92 2.64 45.11 0.12 3.04 16 9 H 0.09 1.77 7.16 -2.38 -0.02 1.75 16 10 N -1.10 -25.67 5.37 -168.89 -0.91 -26.57 16 11 S 2.62 90.47 5.38 -56.49 -0.30 90.17 16 12 O -0.99 -40.19 17.20 -127.65 -2.20 -42.38 16 13 O -1.00 -41.35 18.08 -127.65 -2.31 -43.66 16 14 C -0.59 -21.41 5.90 71.98 0.42 -20.99 16 15 C 0.02 1.07 4.98 29.85 0.15 1.22 16 16 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 17 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 18 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 19 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 20 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 C -0.17 -3.63 5.75 30.69 0.18 -3.45 16 25 C 0.06 1.14 6.84 72.01 0.49 1.63 16 26 O -0.39 -7.17 9.86 -148.98 -1.47 -8.64 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 1.05 7.70 -2.39 -0.02 1.03 16 31 H 0.05 0.74 6.46 -2.39 -0.02 0.72 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.43 8.02 8.80 -96.75 -0.85 7.17 16 39 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 40 H 0.14 4.40 7.44 -2.39 -0.02 4.38 16 41 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.07 1.82 7.52 -2.39 -0.02 1.80 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.08 383.20 -1.09 -75.17 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.08 Total: 20.75 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 3.70 Total: -53.17 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -0.62 Total: -82.95 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -5.97 Total: -94.69 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 90.47 SS G_CDS: -0.30 Total: 90.17 kcal Total: -74.08 -1.09 -75.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346521175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.614 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds