Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.53004 * 109.47408 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47408 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47054 * 54.99392 * 5 4 3 7 7 N 1.46506 * 109.47317 * 294.99953 * 5 4 3 8 8 C 1.34769 * 120.00534 * 154.99733 * 7 5 4 9 9 O 1.21590 * 119.99687 * 0.02562 * 8 7 5 10 10 C 1.47637 * 120.00473 * 180.02562 * 8 7 5 11 11 C 1.40013 * 119.89194 * 359.72634 * 10 8 7 12 12 C 1.36322 * 120.10672 * 179.72491 * 11 10 8 13 13 C 1.40894 * 119.88807 * 0.56884 * 12 11 10 14 14 C 1.41111 * 120.09952 * 179.67996 * 13 12 11 15 15 H 1.07999 * 119.99457 * 204.64836 * 14 13 12 16 16 C 1.40219 * 120.00296 * 24.65357 * 14 13 12 17 17 N 1.30645 * 120.00172 * 17.86883 * 16 14 13 18 18 Si 1.86796 * 120.00058 * 197.87255 * 16 14 13 19 19 H 1.48502 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48509 * 109.47101 * 119.99801 * 18 16 14 21 21 H 1.48495 * 109.47378 * 239.99721 * 18 16 14 22 22 C 1.40890 * 119.79338 * 359.70607 * 13 12 11 23 23 C 1.36321 * 119.89251 * 359.97438 * 22 13 12 24 24 C 1.50699 * 109.47361 * 174.99561 * 5 4 3 25 25 O 1.20827 * 119.99395 * 119.99590 * 24 5 4 26 26 O 1.34222 * 120.00002 * 300.00175 * 24 5 4 27 27 C 1.45199 * 116.99972 * 179.97438 * 26 24 5 28 28 H 1.08997 * 109.47405 * 60.00087 * 1 2 3 29 29 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46603 * 299.99724 * 1 2 3 31 31 H 1.09004 * 109.47104 * 240.00174 * 2 1 3 32 32 H 1.08998 * 109.47362 * 120.00464 * 2 1 3 33 33 H 1.08998 * 109.47260 * 59.99837 * 3 2 1 34 34 H 1.09005 * 109.46904 * 299.99976 * 3 2 1 35 35 H 1.08996 * 109.46837 * 59.99625 * 4 3 2 36 36 H 1.09006 * 109.46730 * 300.00246 * 4 3 2 37 37 H 0.97001 * 119.99322 * 335.00076 * 7 5 4 38 38 H 1.08001 * 119.94858 * 359.97438 * 11 10 8 39 39 H 1.07999 * 120.05603 * 180.25653 * 12 11 10 40 40 H 0.96998 * 120.00219 * 180.02562 * 17 16 14 41 41 H 1.07999 * 120.05059 * 179.97438 * 22 13 12 42 42 H 1.07996 * 119.94631 * 180.02562 * 23 22 13 43 43 H 1.08998 * 109.47519 * 180.02562 * 27 26 24 44 44 H 1.09005 * 109.47215 * 300.00096 * 27 26 24 45 45 H 1.09001 * 109.47162 * 59.99579 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6457 3.4235 0.8423 7 7 3.6920 3.5407 -1.2513 8 6 3.5652 4.8816 -1.2983 9 8 3.7732 5.5472 -0.3022 10 6 3.1736 5.5424 -2.5591 11 6 2.9401 4.7743 -3.7062 12 6 2.5728 5.3794 -4.8713 13 6 2.4400 6.7811 -4.9229 14 6 2.0667 7.4127 -6.1283 15 1 2.3374 8.4433 -6.3042 16 6 1.3442 6.7023 -7.0975 17 7 0.7187 5.6029 -6.7706 18 14 1.2761 7.3277 -8.8564 19 1 2.0611 8.5835 -8.9659 20 1 1.8484 6.3046 -9.7681 21 1 -0.1355 7.5925 -9.2333 22 6 2.6817 7.5502 -3.7674 23 6 3.0421 6.9356 -2.6053 24 6 5.5820 2.8867 0.1233 25 8 6.2588 3.3845 -0.7451 26 8 6.1678 2.3351 1.1976 27 6 7.6184 2.3724 1.2494 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9284 0.8892 37 1 3.5264 3.0097 -2.0460 38 1 3.0472 3.7003 -3.6670 39 1 2.3889 4.7858 -5.7545 40 1 0.2193 5.1112 -7.4412 41 1 2.5815 8.6250 -3.8024 42 1 3.2271 7.5242 -1.7189 43 1 7.9618 1.8940 2.1666 44 1 8.0265 1.8422 0.3888 45 1 7.9561 3.4086 1.2312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354784237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = -128.241115 kcal Electronic energy + Delta-G solvation = -26489.790820 eV Core-core repulsion = 22664.165575 eV Total energy + Delta-G solvation = -3825.625245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63142 -39.03999 -37.32866 -36.43187 -36.23179 -34.01973 -33.87715 -31.32446 -29.85198 -29.43308 -28.35561 -26.72313 -25.56666 -22.99869 -22.23350 -21.14095 -21.02662 -20.49150 -19.75689 -17.64636 -17.53089 -17.08059 -16.60149 -16.26596 -15.87650 -15.44777 -15.06065 -14.20404 -14.10405 -13.93692 -13.80541 -13.63307 -13.29081 -13.19064 -13.04211 -12.81744 -12.62826 -12.16037 -12.10851 -11.93829 -11.79854 -11.39007 -11.35506 -11.32120 -11.26507 -11.03937 -10.93329 -10.79428 -10.67890 -10.65517 -10.34564 -10.04710 -9.56842 -9.35403 -9.06729 -8.83096 -7.71916 -7.54804 -7.04307 -4.60501 2.17776 2.30055 2.63176 2.91424 2.95262 3.00800 3.04565 3.65323 3.73936 3.87749 4.42498 4.55245 4.74428 4.79450 4.99512 5.03513 5.07246 5.11637 5.12793 5.35781 5.42704 5.56576 5.58839 5.60273 5.72787 5.73652 5.85240 6.01210 6.04888 6.05637 6.15566 6.25939 6.31767 6.37257 6.71993 6.77640 6.82354 7.02975 7.12992 7.43379 7.62921 7.77214 7.84071 7.86142 8.06553 8.14217 8.39804 8.62984 8.75163 8.99142 9.87650 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003192 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.997407 B = 8768.813868 C =10110.211531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.124 0.876 7 N -0.719 5.719 8 C 0.580 3.420 9 O -0.572 6.572 10 C -0.282 4.282 11 C -0.060 4.060 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.441 4.441 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.239 4.239 23 C -0.020 4.020 24 C 0.444 3.556 25 O -0.490 6.490 26 O -0.363 6.363 27 C 0.035 3.965 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.404 0.596 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -12.328 9.429 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.158 4.158 5 C 0.054 3.946 6 H 0.141 0.859 7 N -0.373 5.373 8 C 0.376 3.624 9 O -0.453 6.453 10 C -0.286 4.286 11 C -0.079 4.079 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.469 4.469 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.394 5.394 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.258 4.258 23 C -0.039 4.039 24 C 0.284 3.716 25 O -0.375 6.375 26 O -0.279 6.279 27 C -0.059 4.059 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.240 0.760 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.063 -11.883 9.772 15.687 hybrid contribution 0.156 -0.029 -1.245 1.255 sum 3.218 -11.912 8.527 14.999 Atomic orbital electron populations 1.21777 0.95765 1.01424 1.02181 1.21509 0.96041 0.96554 1.01914 1.21642 0.93569 0.97177 1.03467 1.21847 0.97175 0.92808 1.03984 1.20363 0.86229 0.96245 0.91749 0.85891 1.45733 1.71789 1.07995 1.11772 1.18626 0.74474 0.80385 0.88938 1.90634 1.53250 1.64159 1.37298 1.18794 1.23135 0.94030 0.92646 1.20456 0.97663 0.96589 0.93232 1.20968 1.06125 0.95291 0.97312 1.17795 0.85916 0.92073 0.91620 1.19887 1.28371 0.99304 0.99328 0.89662 1.26099 0.92991 0.94085 1.01519 1.69748 1.19980 1.13575 1.36090 0.86174 0.79069 0.80353 0.80776 1.18054 1.19374 1.19670 1.20713 1.13556 0.98399 0.93149 1.20351 0.94016 0.92766 0.96811 1.24706 0.92999 0.74602 0.79322 1.90692 1.65406 1.40938 1.40463 1.86492 1.23663 1.73257 1.44484 1.23216 0.76920 1.02815 1.02924 0.92422 0.92951 0.92729 0.91989 0.92082 0.91362 0.90892 0.90840 0.89255 0.75981 0.89375 0.86174 0.90287 0.88357 0.88121 0.88290 0.92118 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.19 5.10 -26.73 -0.14 -1.32 16 4 C -0.12 -1.20 4.72 -26.73 -0.13 -1.33 16 5 C 0.16 2.30 2.48 -69.08 -0.17 2.13 16 6 H 0.12 1.80 7.58 -51.92 -0.39 1.41 16 7 N -0.72 -12.16 4.01 -55.94 -0.22 -12.39 16 8 C 0.58 12.52 7.59 -12.43 -0.09 12.42 16 9 O -0.57 -13.73 15.99 5.29 0.08 -13.65 16 10 C -0.28 -6.54 5.89 -104.73 -0.62 -7.15 16 11 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 12 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 13 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 14 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 15 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 17 N -0.77 -18.34 10.95 55.56 0.61 -17.73 16 18 Si 0.91 17.27 29.60 -169.99 -5.03 12.23 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 22 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 23 C -0.02 -0.49 9.52 -39.61 -0.38 -0.86 16 24 C 0.44 7.00 7.29 36.01 0.26 7.27 16 25 O -0.49 -9.55 16.07 -18.75 -0.30 -9.85 16 26 O -0.36 -4.72 10.37 -39.24 -0.41 -5.13 16 27 C 0.04 0.36 10.56 101.05 1.07 1.43 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.76 7.99 -51.93 -0.42 0.35 16 37 H 0.40 6.16 6.60 -40.82 -0.27 5.89 16 38 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 39 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 40 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -30.68 380.65 -8.38 -39.06 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.74 Total: 10.91 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.11 Total: -9.19 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.38 Total: -30.12 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.62 Total: -28.63 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.68 -8.38 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354784237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.185 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds