Wall clock time and date at job start Tue Mar 31 2020 12:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.53004 * 109.47408 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47408 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47054 * 54.99392 * 5 4 3 7 7 N 1.46506 * 109.47317 * 294.99953 * 5 4 3 8 8 C 1.34769 * 120.00534 * 154.99733 * 7 5 4 9 9 O 1.21590 * 119.99687 * 0.02562 * 8 7 5 10 10 C 1.47637 * 120.00473 * 180.02562 * 8 7 5 11 11 C 1.40013 * 119.89194 * 359.72634 * 10 8 7 12 12 C 1.36322 * 120.10672 * 179.72491 * 11 10 8 13 13 C 1.40894 * 119.88807 * 0.56884 * 12 11 10 14 14 C 1.41111 * 120.09952 * 179.67996 * 13 12 11 15 15 H 1.07999 * 119.99457 * 204.64836 * 14 13 12 16 16 C 1.40219 * 120.00296 * 24.65357 * 14 13 12 17 17 N 1.30645 * 120.00172 * 17.86883 * 16 14 13 18 18 Si 1.86796 * 120.00058 * 197.87255 * 16 14 13 19 19 H 1.48502 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48509 * 109.47101 * 119.99801 * 18 16 14 21 21 H 1.48495 * 109.47378 * 239.99721 * 18 16 14 22 22 C 1.40890 * 119.79338 * 359.70607 * 13 12 11 23 23 C 1.36321 * 119.89251 * 359.97438 * 22 13 12 24 24 C 1.50699 * 109.47361 * 174.99561 * 5 4 3 25 25 O 1.20827 * 119.99395 * 119.99590 * 24 5 4 26 26 O 1.34222 * 120.00002 * 300.00175 * 24 5 4 27 27 C 1.45199 * 116.99972 * 179.97438 * 26 24 5 28 28 H 1.08997 * 109.47405 * 60.00087 * 1 2 3 29 29 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46603 * 299.99724 * 1 2 3 31 31 H 1.09004 * 109.47104 * 240.00174 * 2 1 3 32 32 H 1.08998 * 109.47362 * 120.00464 * 2 1 3 33 33 H 1.08998 * 109.47260 * 59.99837 * 3 2 1 34 34 H 1.09005 * 109.46904 * 299.99976 * 3 2 1 35 35 H 1.08996 * 109.46837 * 59.99625 * 4 3 2 36 36 H 1.09006 * 109.46730 * 300.00246 * 4 3 2 37 37 H 0.97001 * 119.99322 * 335.00076 * 7 5 4 38 38 H 1.08001 * 119.94858 * 359.97438 * 11 10 8 39 39 H 1.07999 * 120.05603 * 180.25653 * 12 11 10 40 40 H 0.96998 * 120.00219 * 180.02562 * 17 16 14 41 41 H 1.07999 * 120.05059 * 179.97438 * 22 13 12 42 42 H 1.07996 * 119.94631 * 180.02562 * 23 22 13 43 43 H 1.08998 * 109.47519 * 180.02562 * 27 26 24 44 44 H 1.09005 * 109.47215 * 300.00096 * 27 26 24 45 45 H 1.09001 * 109.47162 * 59.99579 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6457 3.4235 0.8423 7 7 3.6920 3.5407 -1.2513 8 6 3.5652 4.8816 -1.2983 9 8 3.7732 5.5472 -0.3022 10 6 3.1736 5.5424 -2.5591 11 6 2.9401 4.7743 -3.7062 12 6 2.5728 5.3794 -4.8713 13 6 2.4400 6.7811 -4.9229 14 6 2.0667 7.4127 -6.1283 15 1 2.3374 8.4433 -6.3042 16 6 1.3442 6.7023 -7.0975 17 7 0.7187 5.6029 -6.7706 18 14 1.2761 7.3277 -8.8564 19 1 2.0611 8.5835 -8.9659 20 1 1.8484 6.3046 -9.7681 21 1 -0.1355 7.5925 -9.2333 22 6 2.6817 7.5502 -3.7674 23 6 3.0421 6.9356 -2.6053 24 6 5.5820 2.8867 0.1233 25 8 6.2588 3.3845 -0.7451 26 8 6.1678 2.3351 1.1976 27 6 7.6184 2.3724 1.2494 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9284 0.8892 37 1 3.5264 3.0097 -2.0460 38 1 3.0472 3.7003 -3.6670 39 1 2.3889 4.7858 -5.7545 40 1 0.2193 5.1112 -7.4412 41 1 2.5815 8.6250 -3.8024 42 1 3.2271 7.5242 -1.7189 43 1 7.9618 1.8940 2.1666 44 1 8.0265 1.8422 0.3888 45 1 7.9561 3.4086 1.2312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354784237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:29 Heat of formation + Delta-G solvation = -144.437830 kcal Electronic energy + Delta-G solvation = -26490.493162 eV Core-core repulsion = 22664.165575 eV Total energy + Delta-G solvation = -3826.327587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89752 -40.62099 -39.01287 -37.70657 -37.33283 -35.68717 -35.17560 -32.71733 -31.43402 -31.25804 -29.27643 -28.04207 -27.01009 -23.94651 -23.86571 -22.84574 -21.86522 -21.83903 -21.36298 -19.38241 -18.89722 -18.50857 -17.95859 -17.49393 -17.19939 -16.84508 -16.14798 -15.76930 -15.61920 -15.43720 -15.09264 -14.87432 -14.54694 -14.48968 -14.25762 -14.01103 -13.93903 -13.70125 -13.53037 -13.23838 -13.03858 -12.85953 -12.73848 -12.61373 -12.39795 -12.21527 -12.10690 -11.85627 -11.83108 -11.77050 -11.49206 -11.38965 -11.37606 -11.12956 -10.81165 -10.30305 -9.59035 -9.43393 -8.80406 -6.49303 0.39933 1.06896 1.14131 1.35982 1.40827 1.52503 1.55400 2.13034 2.17790 2.31140 2.78110 3.46355 3.67384 3.77921 3.91642 4.12281 4.18308 4.27858 4.28717 4.28899 4.32629 4.40530 4.42680 4.57819 4.65894 4.80968 4.83273 4.90927 4.98745 5.02095 5.06399 5.13646 5.17069 5.24442 5.28394 5.34194 5.34838 5.46119 5.55361 5.57290 5.79607 5.91593 5.98213 6.21123 6.52250 6.57010 6.64070 6.75937 6.87449 7.32818 8.15034 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003192 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.997407 B = 8768.813868 C =10110.211531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.120 4.120 4 C -0.108 4.108 5 C 0.159 3.841 6 H 0.120 0.880 7 N -0.704 5.704 8 C 0.580 3.420 9 O -0.601 6.601 10 C -0.294 4.294 11 C -0.052 4.052 12 C -0.197 4.197 13 C 0.103 3.897 14 C -0.472 4.472 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.795 5.795 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.260 1.260 21 H -0.262 1.262 22 C -0.253 4.253 23 C -0.032 4.032 24 C 0.447 3.553 25 O -0.534 6.534 26 O -0.355 6.355 27 C 0.027 3.973 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.412 0.588 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.298 0.702 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.140 0.860 44 H 0.063 0.937 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -14.478 9.500 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.157 4.157 4 C -0.145 4.145 5 C 0.051 3.949 6 H 0.137 0.863 7 N -0.357 5.357 8 C 0.375 3.625 9 O -0.485 6.485 10 C -0.299 4.299 11 C -0.071 4.071 12 C -0.216 4.216 13 C 0.099 3.901 14 C -0.499 4.499 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.418 5.418 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.184 1.184 21 H -0.187 1.187 22 C -0.273 4.273 23 C -0.051 4.051 24 C 0.289 3.711 25 O -0.423 6.423 26 O -0.270 6.270 27 C -0.066 4.066 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.250 0.750 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.158 0.842 44 H 0.082 0.918 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.150 -14.091 9.878 17.494 hybrid contribution 0.164 0.572 -1.132 1.279 sum 3.314 -13.520 8.746 16.439 Atomic orbital electron populations 1.21797 0.96073 1.01940 1.01575 1.21483 0.95738 0.95439 1.02915 1.21624 0.93342 0.98198 1.02576 1.21861 0.97125 0.89844 1.05698 1.20675 0.85712 0.98474 0.90002 0.86251 1.45532 1.70324 1.06523 1.13335 1.18417 0.74376 0.81848 0.87868 1.90610 1.54682 1.65274 1.37961 1.19100 1.22791 0.94079 0.93887 1.20703 0.95982 0.98257 0.92111 1.21005 1.07562 0.95092 0.97953 1.18140 0.86693 0.92931 0.92308 1.20143 1.29643 0.99810 1.00266 0.89717 1.26919 0.91886 0.94077 1.05218 1.69758 1.19872 1.14305 1.37878 0.85067 0.79332 0.79689 0.75184 1.18177 1.18424 1.18704 1.20851 1.14255 0.98857 0.93300 1.20496 0.94299 0.93607 0.96709 1.24893 0.93394 0.73664 0.79196 1.90681 1.66425 1.43033 1.42146 1.86479 1.25390 1.72248 1.42886 1.23556 0.75096 1.02689 1.05237 0.93641 0.91891 0.92775 0.91494 0.90529 0.91524 0.92651 0.89747 0.86814 0.74955 0.86012 0.86706 0.89106 0.87757 0.88049 0.84177 0.91806 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.12 -1.67 5.93 30.59 0.18 -1.49 16 3 C -0.12 -2.11 5.10 30.59 0.16 -1.96 16 4 C -0.11 -1.88 4.72 30.59 0.14 -1.73 16 5 C 0.16 4.29 2.48 44.24 0.11 4.40 16 6 H 0.12 3.39 7.58 -2.38 -0.02 3.37 16 7 N -0.70 -23.33 4.01 -449.16 -1.80 -25.13 16 8 C 0.58 25.19 7.59 86.73 0.66 25.84 16 9 O -0.60 -29.27 15.99 -4.00 -0.06 -29.34 16 10 C -0.29 -13.86 5.89 -19.94 -0.12 -13.97 16 11 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 12 C -0.20 -9.85 8.64 22.47 0.19 -9.66 16 13 C 0.10 5.40 5.58 -21.27 -0.12 5.28 16 14 C -0.47 -24.02 9.04 23.46 0.21 -23.81 16 15 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 16 C 0.04 1.78 5.14 85.35 0.44 2.22 16 17 N -0.79 -37.78 10.95 21.87 0.24 -37.54 16 18 Si 0.99 34.86 29.60 68.60 2.03 36.89 16 19 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 21 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 22 C -0.25 -12.84 9.73 22.47 0.22 -12.62 16 23 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 24 C 0.45 13.58 7.29 71.24 0.52 14.09 16 25 O -0.53 -20.67 16.07 21.96 0.35 -20.31 16 26 O -0.35 -8.50 10.37 -51.34 -0.53 -9.03 16 27 C 0.03 0.50 10.56 113.37 1.20 1.70 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.18 7.75 -2.38 -0.02 1.16 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 1.51 7.99 -2.38 -0.02 1.49 16 37 H 0.41 12.06 6.60 -92.71 -0.61 11.45 16 38 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 39 H 0.12 5.79 6.16 -2.91 -0.02 5.77 16 40 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 42 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 43 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.15 8.13 -2.38 -0.02 1.13 16 45 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 Total: -1.00 -67.90 380.65 5.54 -62.36 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.38 Total: 38.95 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.93 Total: -16.85 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -1.56 Total: -62.67 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.24 Total: -58.68 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -67.90 5.54 -62.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354784237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.079 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds