Wall clock time and date at job start Tue Mar 31 2020 13:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47412 * 240.00159 * 2 1 3 5 5 N 1.46498 * 109.47684 * 59.99468 * 4 2 1 6 6 C 1.34771 * 120.00078 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00415 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47535 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47535 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99689 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00045 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99951 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99937 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47085 * 89.99901 * 14 12 10 16 16 H 1.48495 * 109.46864 * 210.00136 * 14 12 10 17 17 H 1.48500 * 109.46894 * 330.00288 * 14 12 10 18 18 C 1.50699 * 109.47174 * 119.99438 * 2 1 3 19 19 C 1.38247 * 119.92634 * 120.02202 * 18 2 1 20 20 C 1.38240 * 120.14459 * 179.75199 * 19 18 2 21 21 C 1.38552 * 120.02633 * 0.42901 * 20 19 18 22 22 C 1.39265 * 119.82706 * 359.57585 * 21 20 19 23 23 C 1.38231 * 119.92969 * 300.00614 * 18 2 1 24 24 O 1.36496 * 108.64230 * 180.24572 * 22 21 20 25 25 C 1.43981 * 105.48444 * 342.72036 * 24 22 21 26 26 O 1.36505 * 131.53353 * 179.87931 * 21 20 19 27 27 H 1.09002 * 109.47217 * 300.00284 * 1 2 3 28 28 H 1.08999 * 109.46994 * 60.00656 * 1 2 3 29 29 H 1.08998 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47071 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47241 * 299.99199 * 3 2 1 32 32 H 1.08997 * 109.47669 * 59.99435 * 3 2 1 33 33 H 1.09001 * 109.47195 * 180.02562 * 4 2 1 34 34 H 1.09007 * 109.46685 * 299.99903 * 4 2 1 35 35 H 0.97000 * 119.99533 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47336 * 300.00101 * 8 6 5 37 37 H 1.08998 * 109.47290 * 59.99627 * 8 6 5 38 38 H 1.09007 * 109.47037 * 299.99662 * 9 8 6 39 39 H 1.08998 * 109.47156 * 59.99520 * 9 8 6 40 40 H 0.97007 * 120.00097 * 179.97438 * 13 12 10 41 41 H 1.07994 * 119.93290 * 0.02562 * 19 18 2 42 42 H 1.07997 * 119.99327 * 180.33354 * 20 19 18 43 43 H 1.08003 * 119.98943 * 0.02562 * 23 18 2 44 44 H 1.09007 * 110.56955 * 268.54960 * 25 24 22 45 45 H 1.09003 * 110.57719 * 145.67764 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8770 -0.4915 -3.6694 7 8 2.5736 -1.4781 -3.7807 8 6 1.3751 0.2191 -4.9000 9 6 1.8840 -0.5029 -6.1492 10 6 1.3826 0.2081 -7.3797 11 1 0.7626 1.0868 -7.2806 12 6 1.7155 -0.2633 -8.6319 13 7 2.4709 -1.3330 -8.7525 14 14 1.0934 0.6177 -10.1572 15 1 2.0722 1.6587 -10.5614 16 1 0.9278 -0.3615 -11.2613 17 1 -0.2143 1.2560 -9.8613 18 6 2.0323 -0.7103 1.2305 19 6 2.8274 -1.8339 1.1020 20 6 3.2949 -2.4860 2.2277 21 6 2.9599 -2.0194 3.4886 22 6 2.1589 -0.8875 3.6180 23 6 1.6974 -0.2367 2.4852 24 8 1.9784 -0.6303 4.9463 25 6 2.3364 -1.8481 5.6258 26 8 3.2812 -2.4714 4.7359 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9565 0.8899 33 1 3.1301 -0.7216 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 0.9943 0.7581 -2.3565 36 1 0.2851 0.2198 -4.9000 37 1 1.7390 1.2465 -4.9001 38 1 2.9741 -0.5040 -6.1495 39 1 1.5197 -1.5302 -6.1488 40 1 2.7048 -1.6649 -9.6335 41 1 3.0875 -2.2005 0.1201 42 1 3.9203 -3.3604 2.1245 43 1 1.0760 0.6412 2.5827 44 1 1.4606 -2.4831 5.7605 45 1 2.8025 -1.6282 6.5863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360136594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:51 Heat of formation + Delta-G solvation = -89.224460 kcal Electronic energy + Delta-G solvation = -26053.714875 eV Core-core repulsion = 22229.781519 eV Total energy + Delta-G solvation = -3823.933356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.50738 -40.02491 -38.69199 -36.63420 -36.24492 -33.44055 -33.13932 -31.09549 -30.74459 -29.58307 -27.53096 -27.18503 -26.16114 -25.12972 -23.42242 -22.98554 -21.52745 -19.97702 -19.74727 -18.22655 -17.70438 -17.63719 -16.88977 -16.48263 -15.71313 -15.63909 -15.32770 -14.82588 -14.55474 -14.39257 -14.31199 -14.23324 -14.14487 -13.71937 -13.32863 -13.30195 -13.23818 -12.74098 -12.70303 -12.32859 -12.16170 -11.86669 -11.82645 -11.45810 -11.22285 -11.14431 -10.96249 -10.91554 -10.79919 -10.58666 -9.94131 -9.65135 -9.16991 -9.15856 -9.00199 -8.75693 -8.34773 -8.30822 -5.95019 -3.99334 0.80207 0.90080 2.39364 3.05947 3.24123 3.28621 3.33997 3.39865 3.42330 3.55746 4.13479 4.26311 4.28331 4.40408 4.48668 4.52517 4.69561 4.80444 4.87518 4.90242 4.94884 5.18053 5.36402 5.39897 5.44580 5.49417 5.52428 5.65337 5.69485 5.73561 5.75229 5.84301 5.89626 6.00787 6.03640 6.08608 6.22349 6.24536 6.26113 6.73499 6.78637 6.91271 7.75682 7.88058 7.89741 8.08656 8.40108 8.80427 9.09467 9.64117 11.15883 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.038618 B = 0.002034 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.884997 B =13765.946781 C =14276.321322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 C -0.141 4.141 4 C 0.127 3.873 5 N -0.742 5.742 6 C 0.509 3.491 7 O -0.535 6.535 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.055 4.055 19 C -0.108 4.108 20 C -0.094 4.094 21 C 0.024 3.976 22 C 0.031 3.969 23 C -0.092 4.092 24 O -0.311 6.311 25 C 0.213 3.787 26 O -0.310 6.310 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 2.533 29.634 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.199 4.199 4 C 0.003 3.997 5 N -0.397 5.397 6 C 0.298 3.702 7 O -0.410 6.410 8 C -0.170 4.170 9 C -0.001 4.001 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.056 4.056 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.020 4.020 22 C -0.013 4.013 23 C -0.111 4.111 24 O -0.227 6.227 25 C 0.102 3.898 26 O -0.227 6.227 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.101 0.899 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.373 1.723 29.615 29.760 hybrid contribution -0.569 0.709 -0.406 0.996 sum -2.942 2.432 29.210 29.458 Atomic orbital electron populations 1.21930 0.92795 1.02808 1.02320 1.19676 0.96491 0.95705 0.91330 1.21931 1.01879 0.93742 1.02315 1.21385 0.99213 0.96035 0.83079 1.46239 1.55363 1.32603 1.05531 1.21539 0.79505 0.84627 0.84535 1.90668 1.37284 1.26305 1.86759 1.21861 1.01415 1.00392 0.93363 1.18893 0.97117 0.95593 0.88453 1.21229 1.31936 1.12329 0.91036 0.92616 1.25030 0.95217 0.95050 0.99136 1.69998 1.36585 1.22781 1.23453 0.86591 0.79150 0.79369 0.82829 1.20696 1.21243 1.19909 1.19379 0.97595 0.95623 0.92994 1.21096 0.97652 0.95135 0.98722 1.20119 1.02230 1.01272 0.87607 1.19837 0.99656 0.95635 0.86878 1.19716 1.00556 0.96338 0.84711 1.19788 1.01797 1.01477 0.88048 1.87355 1.85011 1.35401 1.14925 1.25610 0.91048 0.80161 0.93029 1.87365 1.53234 1.67588 1.14499 0.92107 0.91626 0.91940 0.91915 0.91630 0.92091 0.91314 0.91323 0.76888 0.90293 0.90288 0.95841 0.95835 0.92965 0.83580 0.84518 0.84725 0.89933 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.11 37.16 0.30 -0.78 16 2 C -0.03 -0.27 0.61 -155.66 -0.09 -0.36 16 3 C -0.14 -1.10 8.11 37.16 0.30 -0.80 16 4 C 0.13 1.46 3.22 -4.05 -0.01 1.44 16 5 N -0.74 -9.70 4.96 -60.30 -0.30 -10.00 16 6 C 0.51 9.49 7.83 -10.99 -0.09 9.40 16 7 O -0.53 -12.35 15.98 5.56 0.09 -12.26 16 8 C -0.13 -2.59 5.64 -27.89 -0.16 -2.75 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.06 -0.50 4.76 -104.62 -0.50 -1.00 16 19 C -0.11 -1.02 8.97 -39.58 -0.35 -1.37 16 20 C -0.09 -0.89 10.06 -39.46 -0.40 -1.29 16 21 C 0.02 0.25 7.15 -39.08 -0.28 -0.03 16 22 C 0.03 0.32 7.15 -39.08 -0.28 0.04 16 23 C -0.09 -0.84 8.72 -39.47 -0.34 -1.18 16 24 O -0.31 -3.01 11.40 -45.68 -0.52 -3.54 16 25 C 0.21 1.46 8.89 101.05 0.90 2.36 16 26 O -0.31 -3.09 11.40 -45.70 -0.52 -3.61 16 27 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 28 H 0.06 0.48 6.86 -51.93 -0.36 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 32 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 33 H 0.07 0.85 7.51 -51.93 -0.39 0.46 16 34 H 0.07 0.85 7.51 -51.93 -0.39 0.46 16 35 H 0.40 4.04 6.16 -40.82 -0.25 3.79 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.15 1.33 5.88 -52.49 -0.31 1.02 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.13 1.01 7.09 -52.48 -0.37 0.63 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -35.42 367.74 -8.06 -43.48 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.53 Total: -0.46 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.53 Total: -9.09 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.44 Total: -36.68 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.95 Total: -19.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.42 -8.06 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360136594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.740 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds