Wall clock time and date at job start Tue Mar 31 2020 12:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99476 * 2 1 4 4 H 1.08997 * 109.47119 * 7.14088 * 3 2 1 5 5 C 1.53004 * 109.47206 * 247.14482 * 3 2 1 6 6 N 1.46501 * 109.46905 * 64.42726 * 5 3 2 7 7 S 1.65597 * 119.99585 * 164.95781 * 6 5 3 8 8 O 1.42106 * 104.27417 * 181.07108 * 7 6 5 9 9 O 1.42099 * 104.28220 * 308.92822 * 7 6 5 10 10 C 1.81402 * 104.45165 * 65.00355 * 7 6 5 11 11 C 1.52999 * 109.47460 * 180.84099 * 10 7 6 12 12 C 1.50709 * 115.54853 * 64.15866 * 11 10 7 13 13 H 1.08000 * 119.99839 * 266.92445 * 12 11 10 14 14 C 1.37874 * 119.99686 * 86.92493 * 12 11 10 15 15 N 1.31516 * 120.00368 * 2.74319 * 14 12 11 16 16 Si 1.86799 * 119.99899 * 182.74035 * 14 12 11 17 17 H 1.48505 * 109.47224 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47437 * 119.99990 * 16 14 12 19 19 H 1.48502 * 109.47453 * 240.00198 * 16 14 12 20 20 C 1.53002 * 117.50039 * 278.49144 * 11 10 7 21 21 C 1.52997 * 117.50118 * 209.83085 * 11 10 7 22 22 C 1.52998 * 109.47350 * 127.14593 * 3 2 1 23 23 C 1.52999 * 109.47092 * 297.67365 * 22 3 2 24 24 C 1.53002 * 109.47388 * 173.04862 * 23 22 3 25 25 C 1.53005 * 109.47079 * 293.05036 * 23 22 3 26 26 H 1.08997 * 109.47583 * 63.75111 * 1 2 3 27 27 H 1.09002 * 109.47356 * 303.74552 * 1 2 3 28 28 H 1.09007 * 109.46481 * 183.75042 * 1 2 3 29 29 H 1.08994 * 109.47496 * 184.42974 * 5 3 2 30 30 H 1.08998 * 109.46993 * 304.43066 * 5 3 2 31 31 H 0.97001 * 120.00051 * 344.95594 * 6 5 3 32 32 H 1.09009 * 109.46837 * 300.84091 * 10 7 6 33 33 H 1.09004 * 109.47392 * 60.83960 * 10 7 6 34 34 H 0.97000 * 119.99999 * 185.01341 * 15 14 12 35 35 H 1.09000 * 117.49172 * 359.97438 * 20 11 10 36 36 H 1.09001 * 117.49463 * 145.01665 * 20 11 10 37 37 H 1.09003 * 117.49569 * 214.98068 * 21 11 10 38 38 H 1.08999 * 117.50028 * 359.97438 * 21 11 10 39 39 H 1.09002 * 109.47292 * 57.66635 * 22 3 2 40 40 H 1.09000 * 109.47657 * 177.67208 * 22 3 2 41 41 H 1.09000 * 109.47006 * 53.04911 * 23 22 3 42 42 H 1.09000 * 109.47062 * 55.35941 * 24 23 22 43 43 H 1.08999 * 109.46845 * 175.35213 * 24 23 22 44 44 H 1.08999 * 109.47039 * 295.35655 * 24 23 22 45 45 H 1.09001 * 109.46981 * 60.00132 * 25 23 22 46 46 H 1.08993 * 109.46987 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.46641 * 299.99945 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.2263 2.0521 0.1277 5 6 2.7294 1.5437 -1.3293 6 7 1.7519 1.5416 -2.4206 7 16 2.1706 2.1368 -3.9081 8 8 0.9895 1.9983 -4.6860 9 8 2.7193 3.4180 -3.6312 10 6 3.4597 1.0069 -4.5014 11 6 3.9494 1.4682 -5.8755 12 6 4.6320 2.8115 -5.9050 13 1 4.0609 3.7028 -6.1190 14 6 5.9855 2.9025 -5.6587 15 7 6.6910 1.8121 -5.4515 16 14 6.8173 4.5746 -5.6195 17 1 5.8105 5.6347 -5.8803 18 1 7.4294 4.7919 -4.2841 19 1 7.8732 4.6269 -6.6624 20 6 3.1103 1.0753 -7.0931 21 6 4.4585 0.3958 -6.8407 22 6 3.0133 1.4173 1.1498 23 6 2.2837 1.2368 2.4825 24 6 3.3059 1.1752 3.6193 25 6 1.3381 2.4179 2.7103 26 1 -0.3634 0.4545 -0.9216 27 1 -0.3634 0.5709 0.8545 28 1 -0.3632 -1.0256 0.0672 29 1 3.2386 2.5069 -1.2994 30 1 3.4597 0.7515 -1.4942 31 1 0.8596 1.1916 -2.2718 32 1 4.2939 1.0068 -3.7996 33 1 3.0515 -0.0007 -4.5806 34 1 7.6272 1.8794 -5.2066 35 1 2.2096 0.4878 -6.9150 36 1 3.0522 1.7883 -7.9155 37 1 5.2869 0.6620 -7.4973 38 1 4.4450 -0.6384 -6.4967 39 1 3.7742 0.6440 1.0446 40 1 3.4868 2.3988 1.1249 41 1 1.7094 0.3107 2.4597 42 1 3.9349 2.0649 3.5909 43 1 2.7839 1.1296 4.5751 44 1 3.9270 0.2872 3.5017 45 1 0.6098 2.4617 1.9005 46 1 0.8181 2.2890 3.6595 47 1 1.9125 3.3439 2.7330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416643465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:41 Heat of formation + Delta-G solvation = -116.446759 kcal Electronic energy + Delta-G solvation = -26325.523442 eV Core-core repulsion = 22635.853589 eV Total energy + Delta-G solvation = -3689.669852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.14572 -36.72341 -36.27266 -35.92576 -35.12442 -34.61902 -31.99891 -30.50382 -28.18300 -27.44886 -26.50837 -25.57112 -25.38996 -21.83404 -21.16353 -20.21244 -19.64683 -18.63844 -17.11990 -16.99551 -16.52797 -16.08655 -15.59973 -15.08172 -14.84385 -14.70026 -14.59649 -14.11154 -14.01034 -13.70994 -13.56029 -13.25428 -13.06462 -12.65594 -12.47275 -12.12258 -11.99004 -11.79240 -11.69547 -11.53840 -11.44412 -11.28602 -11.15498 -10.98385 -10.93635 -10.90594 -10.77636 -10.61563 -10.53721 -10.42245 -10.08481 -9.65379 -9.60608 -9.18240 -9.04697 -8.49882 -8.05209 -6.10970 -4.21672 1.07632 3.30182 3.38016 3.43300 3.47542 3.61751 4.40357 4.43027 4.56733 4.66183 4.73424 4.94245 4.94517 5.01016 5.11887 5.17235 5.21434 5.23563 5.29490 5.41212 5.46722 5.50522 5.53019 5.57924 5.64465 5.71070 5.75924 5.76785 5.89933 5.96134 5.98407 6.09442 6.17308 6.21815 6.29168 6.39120 6.63805 6.74520 7.02425 7.06014 7.21733 7.28000 7.48620 7.83088 8.22699 8.84971 9.49317 10.96594 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003988 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.462832 B = 7019.227553 C = 8007.693679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.082 3.918 4 H 0.073 0.927 5 C 0.102 3.898 6 N -1.131 6.131 7 S 2.606 3.394 8 O -0.978 6.978 9 O -0.947 6.947 10 C -0.554 4.554 11 C 0.037 3.963 12 C -0.508 4.508 13 H 0.070 0.930 14 C 0.079 3.921 15 N -0.876 5.876 16 Si 0.891 3.109 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.214 4.214 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.147 4.147 25 C -0.152 4.152 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.405 0.595 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 -4.142 15.577 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.023 3.977 4 H 0.091 0.909 5 C -0.025 4.025 6 N -0.888 5.888 7 S 2.703 3.297 8 O -0.968 6.968 9 O -0.936 6.936 10 C -0.687 4.687 11 C 0.034 3.966 12 C -0.545 4.545 13 H 0.088 0.912 14 C -0.125 4.125 15 N -0.512 5.512 16 Si 0.718 3.282 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.251 4.251 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.114 4.114 24 C -0.204 4.204 25 C -0.209 4.209 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.238 0.762 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.857 -3.505 15.152 17.898 hybrid contribution 0.413 0.153 0.297 0.531 sum -8.444 -3.352 15.449 17.923 Atomic orbital electron populations 1.22895 0.81453 1.02747 0.99874 1.87935 1.19213 1.27447 1.94906 1.22441 0.96147 0.85325 0.93831 0.90852 1.21706 0.91526 1.02985 0.86236 1.55936 1.22147 1.82414 1.28329 1.05159 0.75790 0.76417 0.72302 1.93503 1.46451 1.87644 1.69240 1.93539 1.80478 1.36940 1.82673 1.29971 1.16005 1.12534 1.10162 1.18330 0.98850 0.96437 0.82935 1.20588 0.93175 0.90547 1.50167 0.91239 1.24947 0.96957 0.96688 0.93919 1.70030 1.08399 1.27245 1.45548 0.86532 0.79397 0.84532 0.77737 1.19131 1.20638 1.21016 1.23240 0.94406 1.04810 1.02633 1.22499 0.95313 0.95311 1.03932 1.21912 0.98045 1.03245 0.92950 1.21068 0.96762 0.99209 0.94376 1.21829 0.98892 1.01917 0.97750 1.21948 0.99352 0.98396 1.01245 0.94082 0.93954 0.89620 0.89066 0.90895 0.76191 0.85317 0.88063 0.92895 0.90801 0.89548 0.89161 0.91675 0.90453 0.90183 0.90621 0.92647 0.92904 0.92596 0.92869 0.92829 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.53 101.05 1.06 1.30 16 2 O -0.38 -4.27 9.49 -35.23 -0.33 -4.60 16 3 C 0.08 0.91 2.22 -26.73 -0.06 0.85 16 4 H 0.07 0.76 5.99 -51.93 -0.31 0.45 16 5 C 0.10 1.40 5.80 -4.04 -0.02 1.38 16 6 N -1.13 -17.28 5.85 -10.61 -0.06 -17.34 16 7 S 2.61 52.64 5.27 -107.50 -0.57 52.07 16 8 O -0.98 -21.50 18.08 -57.54 -1.04 -22.54 16 9 O -0.95 -22.31 16.74 -57.54 -0.96 -23.27 16 10 C -0.55 -11.63 5.93 37.16 0.22 -11.41 16 11 C 0.04 0.90 1.45 -155.66 -0.23 0.68 16 12 C -0.51 -13.92 7.83 -34.44 -0.27 -14.19 16 13 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 14 C 0.08 2.16 5.42 -17.82 -0.10 2.06 16 15 N -0.88 -24.09 12.59 55.43 0.70 -23.40 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.21 -4.77 9.96 -26.69 -0.27 -5.04 16 21 C -0.13 -3.05 9.08 -26.70 -0.24 -3.29 16 22 C -0.12 -1.19 4.39 -26.73 -0.12 -1.31 16 23 C -0.10 -0.81 2.86 -90.62 -0.26 -1.07 16 24 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 25 C -0.15 -1.19 8.98 37.16 0.33 -0.86 16 26 H 0.04 0.36 6.63 -51.93 -0.34 0.01 16 27 H 0.04 0.32 8.01 -51.93 -0.42 -0.10 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.29 7.69 -51.93 -0.40 0.89 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.41 5.40 6.76 -34.47 -0.23 5.17 16 32 H 0.13 2.73 8.14 -51.92 -0.42 2.31 16 33 H 0.10 1.84 8.10 -51.92 -0.42 1.42 16 34 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.09 2.23 8.13 -51.93 -0.42 1.81 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.68 7.56 -51.93 -0.39 0.29 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.42 6.47 -51.93 -0.34 0.08 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -32.51 389.82 -9.33 -41.84 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.32 Total: 6.58 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 0.40 Total: -31.68 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.64 Total: -40.73 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.34 Total: -50.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.57 Total: 52.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.51 -9.33 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416643465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.602 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds