Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99476 * 2 1 4 4 H 1.08997 * 109.47119 * 7.14088 * 3 2 1 5 5 C 1.53004 * 109.47206 * 247.14482 * 3 2 1 6 6 N 1.46501 * 109.46905 * 64.42726 * 5 3 2 7 7 S 1.65597 * 119.99585 * 164.95781 * 6 5 3 8 8 O 1.42106 * 104.27417 * 181.07108 * 7 6 5 9 9 O 1.42099 * 104.28220 * 308.92822 * 7 6 5 10 10 C 1.81402 * 104.45165 * 65.00355 * 7 6 5 11 11 C 1.52999 * 109.47460 * 180.84099 * 10 7 6 12 12 C 1.50709 * 115.54853 * 64.15866 * 11 10 7 13 13 H 1.08000 * 119.99839 * 266.92445 * 12 11 10 14 14 C 1.37874 * 119.99686 * 86.92493 * 12 11 10 15 15 N 1.31516 * 120.00368 * 2.74319 * 14 12 11 16 16 Si 1.86799 * 119.99899 * 182.74035 * 14 12 11 17 17 H 1.48505 * 109.47224 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47437 * 119.99990 * 16 14 12 19 19 H 1.48502 * 109.47453 * 240.00198 * 16 14 12 20 20 C 1.53002 * 117.50039 * 278.49144 * 11 10 7 21 21 C 1.52997 * 117.50118 * 209.83085 * 11 10 7 22 22 C 1.52998 * 109.47350 * 127.14593 * 3 2 1 23 23 C 1.52999 * 109.47092 * 297.67365 * 22 3 2 24 24 C 1.53002 * 109.47388 * 173.04862 * 23 22 3 25 25 C 1.53005 * 109.47079 * 293.05036 * 23 22 3 26 26 H 1.08997 * 109.47583 * 63.75111 * 1 2 3 27 27 H 1.09002 * 109.47356 * 303.74552 * 1 2 3 28 28 H 1.09007 * 109.46481 * 183.75042 * 1 2 3 29 29 H 1.08994 * 109.47496 * 184.42974 * 5 3 2 30 30 H 1.08998 * 109.46993 * 304.43066 * 5 3 2 31 31 H 0.97001 * 120.00051 * 344.95594 * 6 5 3 32 32 H 1.09009 * 109.46837 * 300.84091 * 10 7 6 33 33 H 1.09004 * 109.47392 * 60.83960 * 10 7 6 34 34 H 0.97000 * 119.99999 * 185.01341 * 15 14 12 35 35 H 1.09000 * 117.49172 * 359.97438 * 20 11 10 36 36 H 1.09001 * 117.49463 * 145.01665 * 20 11 10 37 37 H 1.09003 * 117.49569 * 214.98068 * 21 11 10 38 38 H 1.08999 * 117.50028 * 359.97438 * 21 11 10 39 39 H 1.09002 * 109.47292 * 57.66635 * 22 3 2 40 40 H 1.09000 * 109.47657 * 177.67208 * 22 3 2 41 41 H 1.09000 * 109.47006 * 53.04911 * 23 22 3 42 42 H 1.09000 * 109.47062 * 55.35941 * 24 23 22 43 43 H 1.08999 * 109.46845 * 175.35213 * 24 23 22 44 44 H 1.08999 * 109.47039 * 295.35655 * 24 23 22 45 45 H 1.09001 * 109.46981 * 60.00132 * 25 23 22 46 46 H 1.08993 * 109.46987 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.46641 * 299.99945 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.2263 2.0521 0.1277 5 6 2.7294 1.5437 -1.3293 6 7 1.7519 1.5416 -2.4206 7 16 2.1706 2.1368 -3.9081 8 8 0.9895 1.9983 -4.6860 9 8 2.7193 3.4180 -3.6312 10 6 3.4597 1.0069 -4.5014 11 6 3.9494 1.4682 -5.8755 12 6 4.6320 2.8115 -5.9050 13 1 4.0609 3.7028 -6.1190 14 6 5.9855 2.9025 -5.6587 15 7 6.6910 1.8121 -5.4515 16 14 6.8173 4.5746 -5.6195 17 1 5.8105 5.6347 -5.8803 18 1 7.4294 4.7919 -4.2841 19 1 7.8732 4.6269 -6.6624 20 6 3.1103 1.0753 -7.0931 21 6 4.4585 0.3958 -6.8407 22 6 3.0133 1.4173 1.1498 23 6 2.2837 1.2368 2.4825 24 6 3.3059 1.1752 3.6193 25 6 1.3381 2.4179 2.7103 26 1 -0.3634 0.4545 -0.9216 27 1 -0.3634 0.5709 0.8545 28 1 -0.3632 -1.0256 0.0672 29 1 3.2386 2.5069 -1.2994 30 1 3.4597 0.7515 -1.4942 31 1 0.8596 1.1916 -2.2718 32 1 4.2939 1.0068 -3.7996 33 1 3.0515 -0.0007 -4.5806 34 1 7.6272 1.8794 -5.2066 35 1 2.2096 0.4878 -6.9150 36 1 3.0522 1.7883 -7.9155 37 1 5.2869 0.6620 -7.4973 38 1 4.4450 -0.6384 -6.4967 39 1 3.7742 0.6440 1.0446 40 1 3.4868 2.3988 1.1249 41 1 1.7094 0.3107 2.4597 42 1 3.9349 2.0649 3.5909 43 1 2.7839 1.1296 4.5751 44 1 3.9270 0.2872 3.5017 45 1 0.6098 2.4617 1.9005 46 1 0.8181 2.2890 3.6595 47 1 1.9125 3.3439 2.7330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416643465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -138.213491 kcal Electronic energy + Delta-G solvation = -26326.467318 eV Core-core repulsion = 22635.853589 eV Total energy + Delta-G solvation = -3690.613729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.99156 -38.56457 -37.97803 -36.82630 -36.62332 -35.81371 -34.05481 -31.39995 -29.89543 -28.05027 -27.47897 -27.20171 -26.50682 -22.97843 -22.76067 -21.52337 -20.88106 -20.19388 -18.56905 -18.36525 -17.84701 -17.44546 -16.76154 -16.70232 -16.39794 -16.15555 -15.61548 -15.37815 -15.13285 -14.88403 -14.67937 -14.51288 -14.10117 -13.80906 -13.64832 -13.49219 -13.15516 -13.10722 -13.01759 -12.92180 -12.87555 -12.83571 -12.67087 -12.42330 -12.41638 -12.23184 -12.15527 -11.89889 -11.64335 -11.50401 -11.43984 -11.34218 -11.00132 -10.55955 -10.48423 -10.44191 -9.85770 -8.17466 -6.32325 -0.53341 1.37643 1.41252 1.53729 1.98513 2.41595 2.82000 2.90266 3.09494 3.36879 3.42492 3.68779 3.81212 4.00782 4.04138 4.14865 4.20054 4.27389 4.42593 4.48124 4.51063 4.56467 4.57723 4.59819 4.66489 4.81082 4.83185 4.84887 4.86813 4.92141 4.96725 4.97336 5.07078 5.13467 5.15579 5.22350 5.37052 5.44958 5.47586 5.56481 5.62646 5.72980 6.08097 6.23387 6.26868 6.74578 7.39934 8.89796 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003988 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.462832 B = 7019.227553 C = 8007.693679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.390 6.390 3 C 0.088 3.912 4 H 0.082 0.918 5 C 0.091 3.909 6 N -1.113 6.113 7 S 2.624 3.376 8 O -0.997 6.997 9 O -0.985 6.985 10 C -0.553 4.553 11 C 0.006 3.994 12 C -0.525 4.525 13 H 0.049 0.951 14 C 0.042 3.958 15 N -0.894 5.894 16 Si 0.935 3.065 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.274 1.274 20 C -0.202 4.202 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.152 4.152 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.417 0.583 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -4.859 16.950 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.309 6.309 3 C 0.028 3.972 4 H 0.100 0.900 5 C -0.035 4.035 6 N -0.874 5.874 7 S 2.721 3.279 8 O -0.987 6.987 9 O -0.975 6.975 10 C -0.686 4.686 11 C 0.004 3.996 12 C -0.563 4.563 13 H 0.067 0.933 14 C -0.160 4.160 15 N -0.530 5.530 16 Si 0.760 3.240 17 H -0.200 1.200 18 H -0.198 1.198 19 H -0.200 1.200 20 C -0.240 4.240 21 C -0.169 4.169 22 C -0.162 4.162 23 C -0.110 4.110 24 C -0.203 4.203 25 C -0.209 4.209 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.253 0.747 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.609 -4.229 16.515 19.569 hybrid contribution 0.596 0.340 -0.115 0.696 sum -9.013 -3.888 16.400 19.113 Atomic orbital electron populations 1.23103 0.80188 1.04029 1.00526 1.87921 1.20675 1.27356 1.94902 1.22387 0.96515 0.85722 0.92531 0.89985 1.21967 0.91654 1.02879 0.86994 1.55441 1.23036 1.82005 1.26967 1.04339 0.74949 0.75709 0.72858 1.93466 1.46903 1.87803 1.70575 1.93490 1.81101 1.39344 1.83554 1.29883 1.16262 1.14322 1.08141 1.18464 1.00273 0.95765 0.85080 1.20730 0.93650 0.91445 1.50463 0.93290 1.25484 0.97408 0.99246 0.93889 1.70071 1.08663 1.28260 1.46049 0.85862 0.78568 0.81300 0.78266 1.19985 1.19783 1.19985 1.23290 0.94845 1.04418 1.01415 1.22429 0.95094 0.96067 1.03288 1.21931 0.97781 1.03303 0.93168 1.21025 0.96869 0.99300 0.93801 1.21820 0.98764 1.01857 0.97861 1.21950 0.99222 0.98020 1.01738 0.94090 0.92517 0.88251 0.89785 0.90515 0.74723 0.85842 0.85048 0.92612 0.88428 0.89923 0.91386 0.89635 0.90873 0.89889 0.90988 0.92614 0.92015 0.92784 0.92958 0.91882 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.53 113.37 1.19 1.47 16 2 O -0.39 -8.08 9.49 -148.98 -1.41 -9.49 16 3 C 0.09 1.81 2.22 30.59 0.07 1.88 16 4 H 0.08 1.54 5.99 -2.39 -0.01 1.53 16 5 C 0.09 2.41 5.80 86.38 0.50 2.91 16 6 N -1.11 -32.56 5.85 -187.49 -1.10 -33.66 16 7 S 2.62 104.39 5.27 -56.49 -0.30 104.09 16 8 O -1.00 -42.84 18.08 -127.65 -2.31 -45.15 16 9 O -0.99 -46.81 16.74 -127.65 -2.14 -48.95 16 10 C -0.55 -22.69 5.93 71.98 0.43 -22.27 16 11 C 0.01 0.31 1.45 -52.93 -0.08 0.23 16 12 C -0.53 -29.17 7.83 25.60 0.20 -28.97 16 13 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 14 C 0.04 2.31 5.42 84.65 0.46 2.76 16 15 N -0.89 -49.14 12.59 21.45 0.27 -48.87 16 16 Si 0.93 44.15 29.54 68.60 2.03 46.18 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.20 -8.84 9.96 30.62 0.30 -8.53 16 21 C -0.13 -5.93 9.08 30.62 0.28 -5.65 16 22 C -0.12 -2.23 4.39 30.59 0.13 -2.09 16 23 C -0.09 -1.39 2.86 -10.79 -0.03 -1.42 16 24 C -0.15 -1.99 9.19 71.98 0.66 -1.33 16 25 C -0.15 -2.08 8.98 71.98 0.65 -1.44 16 26 H 0.04 0.62 6.63 -2.39 -0.02 0.61 16 27 H 0.06 0.71 8.01 -2.39 -0.02 0.69 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.42 10.36 6.76 -96.74 -0.65 9.71 16 32 H 0.12 5.18 8.14 -2.39 -0.02 5.16 16 33 H 0.13 4.47 8.10 -2.39 -0.02 4.45 16 34 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 35 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 36 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.07 3.38 8.13 -2.39 -0.02 3.36 16 38 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.16 7.56 -2.39 -0.02 1.14 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 0.72 6.47 -2.39 -0.02 0.70 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -68.46 389.82 0.09 -68.37 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.28 Total: 29.93 kcal Atomic # 6 Polarization: -67.21 SS G_CDS: 4.77 Total: -62.45 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -0.83 Total: -82.53 kcal Atomic # 8 Polarization: -97.73 SS G_CDS: -5.86 Total: -103.59 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 104.39 SS G_CDS: -0.30 Total: 104.09 kcal Total: -68.46 0.09 -68.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416643465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.848 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds