Wall clock time and date at job start Tue Mar 31 2020 12:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00091 * 2 1 4 4 H 1.09000 * 109.47161 * 4.64658 * 3 2 1 5 5 C 1.52998 * 109.47131 * 124.64649 * 3 2 1 6 6 C 1.53002 * 109.47140 * 302.62558 * 5 3 2 7 7 C 1.52996 * 109.47005 * 174.63236 * 6 5 3 8 8 C 1.52999 * 109.46706 * 294.63344 * 6 5 3 9 9 C 1.52998 * 109.46946 * 244.64580 * 3 2 1 10 10 S 1.81400 * 109.47321 * 59.35103 * 9 3 2 11 11 O 1.42098 * 110.54119 * 292.90484 * 10 9 3 12 12 O 1.42098 * 110.53979 * 69.65775 * 10 9 3 13 13 N 1.65602 * 104.44967 * 181.28012 * 10 9 3 14 14 C 1.46501 * 119.99883 * 65.00180 * 13 10 9 15 15 C 1.53000 * 109.47237 * 156.59620 * 14 13 10 16 16 C 1.50705 * 115.54813 * 59.49631 * 15 14 13 17 17 H 1.07998 * 120.00418 * 265.78750 * 16 15 14 18 18 C 1.37880 * 120.00040 * 85.78046 * 16 15 14 19 19 N 1.31521 * 119.99541 * 2.34923 * 18 16 15 20 20 Si 1.86796 * 120.00179 * 182.34378 * 18 16 15 21 21 H 1.48493 * 109.47330 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.46991 * 120.00167 * 20 18 16 23 23 H 1.48498 * 109.46935 * 239.99879 * 20 18 16 24 24 C 1.53005 * 117.50319 * 273.83074 * 15 14 13 25 25 C 1.52998 * 117.50469 * 205.16793 * 15 14 13 26 26 H 1.08998 * 109.47346 * 54.22444 * 1 2 3 27 27 H 1.09003 * 109.47232 * 294.22850 * 1 2 3 28 28 H 1.09005 * 109.47130 * 174.22498 * 1 2 3 29 29 H 1.08999 * 109.47267 * 62.62718 * 5 3 2 30 30 H 1.09001 * 109.46872 * 182.62439 * 5 3 2 31 31 H 1.08993 * 109.47008 * 54.63124 * 6 5 3 32 32 H 1.09001 * 109.47587 * 60.00015 * 7 6 5 33 33 H 1.09001 * 109.46736 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47240 * 299.99832 * 7 6 5 35 35 H 1.08992 * 109.47598 * 60.00043 * 8 6 5 36 36 H 1.09000 * 109.47145 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.47022 * 299.99456 * 8 6 5 38 38 H 1.08997 * 109.47550 * 179.35408 * 9 3 2 39 39 H 1.09003 * 109.47350 * 299.35141 * 9 3 2 40 40 H 0.96999 * 120.00036 * 244.99887 * 13 10 9 41 41 H 1.09004 * 109.47206 * 276.59669 * 14 13 10 42 42 H 1.08999 * 109.47046 * 36.60052 * 14 13 10 43 43 H 0.97007 * 119.99502 * 185.01064 * 19 18 16 44 44 H 1.09000 * 117.49479 * 359.97438 * 24 15 14 45 45 H 1.08994 * 117.50129 * 145.01418 * 24 15 14 46 46 H 1.09000 * 117.50260 * 214.98159 * 25 15 14 47 47 H 1.09006 * 117.49370 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2223 2.0540 0.0832 5 6 2.9668 1.4377 1.1867 6 6 2.2090 1.1586 2.4862 7 6 3.1911 1.1590 3.6594 8 6 1.1535 2.2445 2.7043 9 6 2.7819 1.5200 -1.3035 10 16 1.6516 1.3441 -2.7114 11 8 1.1987 0.0019 -2.8225 12 8 0.7382 2.4317 -2.7563 13 7 2.6124 1.5625 -4.0425 14 6 3.6765 0.6016 -4.3433 15 6 4.0120 0.6625 -5.8348 16 6 4.4809 2.0022 -6.3414 17 1 3.7733 2.6935 -6.7748 18 6 5.8132 2.3454 -6.2514 19 7 6.6823 1.4858 -5.7660 20 14 6.3839 4.0311 -6.8190 21 1 5.2199 4.8050 -7.3200 22 1 7.0045 4.7532 -5.6793 23 1 7.3812 3.8752 -7.9082 24 6 3.1740 -0.1974 -6.7832 25 6 4.6216 -0.5870 -6.4735 26 1 -0.3634 0.6008 -0.8337 27 1 -0.3634 0.4217 0.9372 28 1 -0.3634 -1.0225 -0.1034 29 1 3.7804 0.7204 1.0793 30 1 3.3746 2.4483 1.2137 31 1 1.7215 0.1860 2.4208 32 1 3.6787 2.1317 3.7249 33 1 2.6511 0.9605 4.5852 34 1 3.9431 0.3854 3.5040 35 1 0.4539 2.2442 1.8686 36 1 0.6139 2.0459 3.6303 37 1 1.6410 3.2172 2.7698 38 1 3.2157 2.5199 -1.3086 39 1 3.5772 0.7786 -1.3813 40 1 2.4705 2.3266 -4.6229 41 1 4.5643 0.8484 -3.7609 42 1 3.3416 -0.4035 -4.0870 43 1 7.6060 1.7517 -5.6348 44 1 2.3840 -0.8068 -6.3444 45 1 2.9622 0.2056 -7.7735 46 1 5.3615 -0.4402 -7.2603 47 1 4.7841 -1.4524 -5.8309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420698367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:53 Heat of formation + Delta-G solvation = -114.111258 kcal Electronic energy + Delta-G solvation = -26349.695681 eV Core-core repulsion = 22660.127104 eV Total energy + Delta-G solvation = -3689.568577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.11856 -37.07466 -36.64104 -35.92388 -35.53207 -33.28507 -32.24065 -31.96820 -27.49003 -27.33687 -26.48056 -25.95781 -24.91427 -22.20989 -21.05279 -20.20310 -19.44199 -18.79909 -17.29672 -17.02632 -16.61519 -16.10413 -15.79056 -15.33749 -14.88977 -14.72067 -14.67828 -14.18989 -14.00404 -13.72930 -13.52185 -13.08011 -12.81825 -12.80226 -12.46848 -12.37339 -12.10477 -12.04894 -11.88396 -11.72774 -11.59787 -11.49437 -11.31485 -11.17625 -11.04836 -10.97900 -10.80794 -10.72994 -10.51781 -10.43457 -10.17819 -9.76613 -9.52340 -9.05238 -8.72146 -8.38271 -8.13013 -6.11611 -4.19711 0.62217 3.18654 3.22014 3.31701 3.35391 3.49181 4.01434 4.33268 4.39925 4.51593 4.56007 4.68987 4.81878 4.86248 5.09570 5.16421 5.21608 5.23438 5.26638 5.35674 5.39092 5.47714 5.51873 5.60977 5.63168 5.69013 5.73777 5.86309 5.87524 5.97526 6.07929 6.19722 6.27331 6.35625 6.43955 6.58287 6.80771 6.95276 6.97147 7.13016 7.40571 7.58621 7.76482 7.80614 8.35414 8.83344 9.47538 10.96363 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003710 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.089641 B = 7545.260269 C = 8282.139567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.372 6.372 3 C 0.098 3.902 4 H 0.077 0.923 5 C -0.114 4.114 6 C -0.100 4.100 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.653 4.653 10 S 2.606 3.394 11 O -0.949 6.949 12 O -0.976 6.976 13 N -1.098 6.098 14 C 0.157 3.843 15 C 0.032 3.968 16 C -0.495 4.495 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.877 5.877 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.210 4.210 25 C -0.146 4.146 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.421 0.579 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 -0.197 15.959 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C 0.039 3.961 4 H 0.095 0.905 5 C -0.152 4.152 6 C -0.119 4.119 7 C -0.203 4.203 8 C -0.212 4.212 9 C -0.781 4.781 10 S 2.697 3.303 11 O -0.939 6.939 12 O -0.966 6.966 13 N -0.859 5.859 14 C 0.031 3.969 15 C 0.030 3.970 16 C -0.532 4.532 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.513 5.513 20 Si 0.715 3.285 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.247 4.247 25 C -0.185 4.185 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.257 0.743 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.124 -0.742 16.057 18.010 hybrid contribution 1.065 1.609 -0.337 1.959 sum -7.059 0.867 15.720 17.254 Atomic orbital electron populations 1.23022 0.80703 1.03984 0.99732 1.88040 1.19831 1.26401 1.94749 1.21821 0.95568 0.86012 0.92703 0.90494 1.21894 0.98057 1.02851 0.92425 1.21124 0.96352 1.00056 0.94326 1.21819 0.99089 1.01838 0.97566 1.21974 0.98802 0.98883 1.01499 1.31111 1.18246 1.12195 1.16540 1.04928 0.75204 0.74558 0.75617 1.93587 1.78705 1.36658 1.84924 1.93560 1.60879 1.55768 1.86400 1.55223 1.51036 1.38439 1.41230 1.20904 0.87749 0.88854 0.99372 1.18920 0.97998 0.92243 0.87887 1.20446 0.92708 0.99570 1.40524 0.92069 1.24984 0.96519 0.96715 0.94886 1.70016 1.03396 1.33423 1.44497 0.86615 0.78883 0.84466 0.78537 1.19623 1.20992 1.21011 1.23043 0.94019 1.06300 1.01375 1.22509 0.93974 0.98454 1.03522 0.94376 0.93452 0.88487 0.90421 0.90442 0.90165 0.92768 0.92780 0.92530 0.92791 0.92583 0.92489 0.84040 0.83949 0.74287 0.91924 0.92877 0.93013 0.91365 0.90457 0.89602 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.02 101.05 1.01 1.27 16 2 O -0.37 -5.01 8.53 -44.21 -0.38 -5.39 16 3 C 0.10 1.20 2.08 -26.73 -0.06 1.14 16 4 H 0.08 0.86 6.17 -51.93 -0.32 0.53 16 5 C -0.11 -1.16 4.44 -26.73 -0.12 -1.27 16 6 C -0.10 -0.89 2.83 -90.62 -0.26 -1.15 16 7 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 8 C -0.15 -1.25 8.95 37.16 0.33 -0.91 16 9 C -0.65 -8.68 5.80 37.16 0.22 -8.47 16 10 S 2.61 44.05 4.57 -107.50 -0.49 43.56 16 11 O -0.95 -18.26 15.81 -62.50 -0.99 -19.25 16 12 O -0.98 -18.16 18.08 -57.54 -1.04 -19.20 16 13 N -1.10 -20.65 5.80 -10.61 -0.06 -20.71 16 14 C 0.16 3.28 6.04 -4.04 -0.02 3.25 16 15 C 0.03 0.74 1.63 -155.66 -0.25 0.48 16 16 C -0.49 -12.59 8.16 -34.44 -0.28 -12.87 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.07 1.87 5.42 -17.82 -0.10 1.77 16 19 N -0.88 -23.32 12.66 55.43 0.70 -22.62 16 20 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.21 -4.58 9.95 -26.69 -0.27 -4.84 16 25 C -0.15 -3.34 9.18 -26.69 -0.24 -3.59 16 26 H 0.04 0.48 7.19 -51.93 -0.37 0.10 16 27 H 0.05 0.42 7.40 -51.93 -0.38 0.04 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.45 5.90 -51.93 -0.31 0.14 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.14 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.14 1.84 8.14 -51.92 -0.42 1.41 16 40 H 0.42 8.02 8.11 -34.47 -0.28 7.74 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 1.06 7.53 -51.93 -0.39 0.67 16 43 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -30.42 387.99 -9.45 -39.88 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.33 Total: 8.80 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 0.31 Total: -25.99 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.64 Total: -43.33 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.41 Total: -43.83 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 44.05 SS G_CDS: -0.49 Total: 43.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.42 -9.45 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420698367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.234 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds