Wall clock time and date at job start Tue Mar 31 2020 12:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46913 * 2 1 4 4 C 1.53005 * 109.47169 * 240.00453 * 2 1 3 5 5 C 1.50704 * 109.47162 * 59.99543 * 4 2 1 6 6 H 1.07996 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99532 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00294 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99411 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47411 * 60.00386 * 9 7 5 11 11 H 1.48501 * 109.46928 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47613 * 299.99910 * 9 7 5 13 13 C 1.52993 * 109.47244 * 120.00331 * 2 1 3 14 14 N 1.46507 * 109.46942 * 300.00003 * 13 2 1 15 15 S 1.65601 * 119.99697 * 165.00534 * 14 13 2 16 16 O 1.42101 * 104.27743 * 308.92320 * 15 14 13 17 17 O 1.42106 * 104.27527 * 181.07138 * 15 14 13 18 18 C 1.81393 * 104.45208 * 64.99813 * 15 14 13 19 19 C 1.53009 * 109.47107 * 179.97438 * 18 15 14 20 20 O 1.42899 * 109.47113 * 179.97438 * 19 18 15 21 21 C 1.42903 * 113.99629 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46726 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49371 * 243.61887 * 22 21 20 24 24 C 1.53001 * 117.49608 * 174.99962 * 22 21 20 25 25 H 1.08998 * 109.46588 * 299.99967 * 1 2 3 26 26 H 1.08995 * 109.47159 * 59.99657 * 1 2 3 27 27 H 1.09002 * 109.46606 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47041 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47488 * 300.00141 * 3 2 1 30 30 H 1.08998 * 109.47466 * 60.00571 * 3 2 1 31 31 H 1.08995 * 109.47005 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46667 * 300.00019 * 4 2 1 33 33 H 0.97007 * 119.99857 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47395 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47658 * 59.99838 * 13 2 1 36 36 H 0.96992 * 119.99862 * 344.99583 * 14 13 2 37 37 H 1.08997 * 109.47613 * 60.00279 * 18 15 14 38 38 H 1.08998 * 109.47064 * 299.99290 * 18 15 14 39 39 H 1.09007 * 109.46516 * 59.99805 * 19 18 15 40 40 H 1.09004 * 109.47113 * 300.00274 * 19 18 15 41 41 H 1.09002 * 109.47382 * 59.99956 * 21 20 19 42 42 H 1.09001 * 109.46938 * 299.99942 * 21 20 19 43 43 H 1.08995 * 115.55630 * 29.32572 * 22 21 20 44 44 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 45 45 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 46 46 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 47 47 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6257 -1.5518 -3.8527 9 14 1.2482 0.3990 -5.2571 10 1 1.7442 1.7986 -5.2573 11 1 1.7421 -0.3018 -6.4697 12 1 -0.2368 0.4000 -5.2571 13 6 2.0401 -0.7213 1.2491 14 7 1.5517 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.0212 -2.0455 3.7028 17 8 1.0525 0.1619 4.8194 18 6 3.4007 -0.9669 4.2445 19 6 3.6027 -1.6532 5.5970 20 8 5.0009 -1.8024 5.8514 21 6 5.3006 -2.4365 7.0965 22 6 6.8179 -2.5420 7.2626 23 6 7.4258 -3.9448 7.3247 24 6 7.3468 -3.0886 8.5902 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7488 -1.2493 33 1 2.8600 -1.8832 -4.7338 34 1 3.1301 -0.7209 1.2494 35 1 1.6768 -1.7490 1.2492 36 1 1.1851 0.8644 2.3729 37 1 3.8734 0.0151 4.2617 38 1 3.8508 -1.5731 3.4583 39 1 3.1299 -2.6353 5.5802 40 1 3.1526 -1.0467 6.3830 41 1 4.8629 -3.4346 7.1106 42 1 4.8861 -1.8463 7.9138 43 1 7.4001 -1.7622 6.7718 44 1 6.7449 -4.7924 7.2467 45 1 8.4081 -4.0879 6.8745 46 1 8.2772 -2.6685 8.9726 47 1 6.6139 -3.3725 9.3454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425233222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:05 Heat of formation + Delta-G solvation = -113.936814 kcal Electronic energy + Delta-G solvation = -24937.632590 eV Core-core repulsion = 21248.071577 eV Total energy + Delta-G solvation = -3689.561013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.88620 -37.76219 -37.08570 -37.03137 -35.98726 -33.59824 -32.13561 -31.91654 -27.33201 -27.04597 -26.47364 -25.86865 -23.73813 -22.79561 -22.75748 -21.09016 -19.31874 -18.51853 -17.87454 -17.07909 -16.78716 -16.37798 -16.11125 -15.85769 -15.80991 -14.79053 -14.64175 -14.54585 -14.21519 -13.88712 -13.84557 -13.37381 -12.83960 -12.45965 -12.28101 -12.18819 -12.13613 -12.07913 -12.03561 -11.93500 -11.88914 -11.56681 -11.24288 -11.08177 -10.99267 -10.86280 -10.79851 -10.66581 -10.61786 -10.41645 -10.26509 -9.91975 -9.90220 -9.28235 -9.16886 -8.92692 -8.36456 -6.01039 -4.01871 0.15159 2.68866 3.06931 3.32105 3.37329 3.39092 3.43355 3.77197 4.10970 4.23650 4.43466 4.44578 4.45636 4.54967 4.69012 4.79248 4.87793 5.02924 5.13915 5.21033 5.23240 5.24785 5.34648 5.43936 5.47526 5.54610 5.68134 5.72885 5.76941 5.81959 6.10321 6.22338 6.32204 6.39605 6.65943 6.68757 6.74905 7.04860 7.08409 7.13400 7.17279 7.61441 7.74484 7.97602 8.40192 9.02528 9.61267 11.10369 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.002459 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.555595 B =11385.050562 C =12485.232864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.119 3.881 14 N -1.108 6.108 15 S 2.619 3.381 16 O -0.950 6.950 17 O -0.963 6.963 18 C -0.640 4.640 19 C 0.077 3.923 20 O -0.374 6.374 21 C 0.088 3.912 22 C -0.155 4.155 23 C -0.177 4.177 24 C -0.174 4.174 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -0.579 22.568 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.006 4.006 14 N -0.871 5.871 15 S 2.709 3.291 16 O -0.940 6.940 17 O -0.953 6.953 18 C -0.766 4.766 19 C -0.001 4.001 20 O -0.294 6.294 21 C 0.011 3.989 22 C -0.173 4.173 23 C -0.214 4.214 24 C -0.211 4.211 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.255 0.745 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.566 -1.091 22.857 23.550 hybrid contribution 0.242 0.806 -1.100 1.385 sum 5.808 -0.285 21.757 22.521 Atomic orbital electron populations 1.21754 0.95056 1.01361 1.00384 1.20805 0.95764 0.95678 0.94429 1.21774 1.00390 0.96013 1.00435 1.19135 0.96265 0.95360 0.89641 1.21152 1.31162 1.12101 0.90507 0.92277 1.25007 0.95335 0.95087 0.99086 1.69944 1.37005 1.22991 1.23547 0.86702 0.79183 0.79728 0.82618 1.20359 1.21441 1.20327 1.21659 0.97922 0.96588 0.84468 1.55491 1.78243 1.30666 1.22713 1.04658 0.76534 0.74519 0.73407 1.93621 1.72285 1.43570 1.84507 1.93594 1.74921 1.62564 1.64214 1.30880 1.28978 1.11153 1.05636 1.21991 0.84427 0.99676 0.93976 1.87943 1.22286 1.80669 1.38458 1.22095 0.93959 0.96822 0.86027 1.22132 0.94788 0.98609 1.01811 1.23096 1.02917 0.94025 1.01344 1.22986 1.03082 1.03996 0.91028 0.94832 0.91613 0.93258 0.93347 0.91395 0.95002 0.96356 0.96219 0.93000 0.92083 0.90369 0.74547 0.84079 0.83906 0.91648 0.91776 0.92728 0.92523 0.86696 0.88531 0.88450 0.88309 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 2 C -0.07 -1.19 0.55 -154.51 -0.08 -1.28 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.03 0.80 4.04 -27.88 -0.11 0.68 16 5 C -0.51 -13.35 7.65 -34.44 -0.26 -13.61 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.12 1.81 5.02 -4.04 -0.02 1.79 16 14 N -1.11 -14.23 5.22 -10.61 -0.06 -14.28 16 15 S 2.62 32.06 5.46 -107.50 -0.59 31.47 16 16 O -0.95 -14.79 17.50 -57.54 -1.01 -15.80 16 17 O -0.96 -13.84 18.08 -57.54 -1.04 -14.88 16 18 C -0.64 -6.26 6.44 37.16 0.24 -6.02 16 19 C 0.08 0.76 5.95 37.16 0.22 0.98 16 20 O -0.37 -4.08 10.34 -35.23 -0.36 -4.44 16 21 C 0.09 0.74 6.22 37.16 0.23 0.97 16 22 C -0.16 -1.21 6.06 -90.62 -0.55 -1.76 16 23 C -0.18 -1.20 10.18 -26.73 -0.27 -1.47 16 24 C -0.17 -1.04 10.25 -26.73 -0.27 -1.32 16 25 H 0.03 0.51 7.19 -51.93 -0.37 0.14 16 26 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.03 0.43 6.60 -51.93 -0.34 0.09 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.24 7.69 -51.93 -0.40 0.84 16 36 H 0.42 4.99 6.44 -34.47 -0.22 4.76 16 37 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.14 1.33 8.14 -51.92 -0.42 0.91 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.41 7.88 -51.93 -0.41 0.00 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -33.17 389.70 -10.05 -43.23 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.20 Total: 1.50 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -0.38 Total: -23.46 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.68 Total: -39.53 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -2.41 Total: -35.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 32.06 SS G_CDS: -0.59 Total: 31.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.17 -10.05 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425233222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.712 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds