Wall clock time and date at job start Tue Mar 31 2020 13:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00058 * 2 1 4 4 C 1.52997 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00191 * 4 3 2 6 6 C 1.46507 * 119.99787 * 274.32737 * 5 4 3 7 7 C 1.53007 * 109.46686 * 272.59613 * 6 5 4 8 8 C 1.52995 * 109.47131 * 56.24774 * 7 6 5 9 9 C 1.52997 * 109.46503 * 176.25042 * 7 6 5 10 10 S 1.65590 * 119.99962 * 94.32445 * 5 4 3 11 11 O 1.42102 * 104.27955 * 153.93430 * 10 5 4 12 12 O 1.42095 * 104.28092 * 26.07284 * 10 5 4 13 13 C 1.81398 * 104.45159 * 270.00053 * 10 5 4 14 14 C 1.52996 * 109.47393 * 186.15010 * 13 10 5 15 15 C 1.50700 * 115.55193 * 295.90831 * 14 13 10 16 16 H 1.08006 * 119.99522 * 95.53615 * 15 14 13 17 17 C 1.37872 * 120.00341 * 275.53273 * 15 14 13 18 18 N 1.31520 * 119.99630 * 6.43707 * 17 15 14 19 19 Si 1.86793 * 120.00163 * 186.42963 * 17 15 14 20 20 H 1.48504 * 109.47466 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47426 * 300.00758 * 19 17 15 22 22 H 1.48502 * 109.47087 * 60.00347 * 19 17 15 23 23 C 1.53001 * 117.49928 * 81.58622 * 14 13 10 24 24 C 1.53006 * 117.49993 * 150.24212 * 14 13 10 25 25 H 1.08993 * 109.47393 * 59.99625 * 1 2 3 26 26 H 1.09004 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46775 * 299.99379 * 1 2 3 28 28 H 1.09007 * 109.46912 * 60.00640 * 3 2 1 29 29 H 1.09002 * 109.47525 * 300.00747 * 3 2 1 30 30 H 1.09008 * 109.47106 * 305.00139 * 4 3 2 31 31 H 1.09000 * 109.47332 * 185.00615 * 4 3 2 32 32 H 1.08995 * 109.46848 * 32.59160 * 6 5 4 33 33 H 1.08992 * 109.46740 * 152.59675 * 6 5 4 34 34 H 1.08999 * 109.46912 * 296.24734 * 7 6 5 35 35 H 1.08997 * 109.46800 * 173.26058 * 8 7 6 36 36 H 1.08997 * 109.47026 * 293.26311 * 8 7 6 37 37 H 1.09002 * 109.47552 * 53.26582 * 8 7 6 38 38 H 1.08996 * 109.47816 * 59.99795 * 9 7 6 39 39 H 1.09004 * 109.46952 * 180.02562 * 9 7 6 40 40 H 1.09008 * 109.47369 * 299.99719 * 9 7 6 41 41 H 1.09002 * 109.47098 * 66.14772 * 13 10 5 42 42 H 1.09000 * 109.47136 * 306.15337 * 13 10 5 43 43 H 0.96994 * 120.00576 * 355.26617 * 18 17 15 44 44 H 1.09002 * 117.49800 * 215.00521 * 23 14 13 45 45 H 1.09002 * 117.49582 * 0.02562 * 23 14 13 46 46 H 1.09007 * 117.49822 * 359.97346 * 24 14 13 47 47 H 1.08997 * 117.50350 * 144.97347 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0144 -0.8952 -1.3732 7 6 5.3652 -1.4124 -0.8741 8 6 5.5943 -0.9369 0.5619 9 6 5.3712 -2.9419 -0.9122 10 16 4.4294 1.5131 -2.5318 11 8 5.3297 0.6986 -3.2703 12 8 4.8627 2.7262 -1.9321 13 6 2.8970 1.7766 -3.4660 14 6 3.2134 2.5189 -4.7659 15 6 3.7596 3.9138 -4.6016 16 1 4.8265 4.0811 -4.6163 17 6 2.8974 4.9763 -4.4325 18 7 1.6082 4.7603 -4.2877 19 14 3.5603 6.7225 -4.4088 20 1 2.4382 7.6755 -4.2139 21 1 4.5320 6.8681 -3.2953 22 1 4.2380 7.0122 -5.6980 23 6 3.7319 1.6914 -5.9438 24 6 2.3079 2.2522 -5.9701 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6886 1.8463 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 3.8514 0.5680 0.8410 31 1 3.9785 2.1764 0.0890 32 1 3.2148 -1.3305 -0.7739 33 1 3.8807 -1.1772 -2.4174 34 1 6.1598 -1.0298 -1.5147 35 1 6.4967 -1.4018 0.9589 36 1 5.7093 0.1469 0.5718 37 1 4.7401 -1.2173 1.1782 38 1 5.2079 -3.2806 -1.9352 39 1 6.3333 -3.3104 -0.5562 40 1 4.5765 -3.3244 -0.2716 41 1 2.2046 2.3695 -2.8684 42 1 2.4432 0.8134 -3.6989 43 1 1.2550 3.8605 -4.3683 44 1 4.4683 2.1558 -6.5997 45 1 3.8473 0.6181 -5.7926 46 1 1.4871 1.5475 -5.8364 47 1 2.1070 3.0856 -6.6432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451029826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:37 Heat of formation + Delta-G solvation = -107.170011 kcal Electronic energy + Delta-G solvation = -27544.462424 eV Core-core repulsion = 23855.194842 eV Total energy + Delta-G solvation = -3689.267582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.42286 -37.11684 -37.03329 -36.31242 -35.10468 -33.75573 -31.98997 -29.70537 -28.31962 -27.21033 -26.51814 -25.14270 -24.94300 -22.34380 -21.41265 -20.30738 -19.74739 -18.24513 -17.20673 -16.97398 -16.38405 -16.06677 -15.72661 -15.38143 -14.96730 -14.73808 -14.36132 -13.94608 -13.78832 -13.73642 -13.27552 -12.92795 -12.62889 -12.53328 -12.42617 -12.24516 -12.00795 -11.88889 -11.73185 -11.47789 -11.31832 -11.27560 -11.16533 -11.04577 -10.84795 -10.78987 -10.65282 -10.58785 -10.45080 -10.29510 -10.09506 -9.75234 -9.60185 -8.80338 -8.65279 -8.50438 -8.27415 -6.47043 -4.25181 0.99100 3.29695 3.43803 3.47476 3.64400 3.77684 4.47009 4.53245 4.80314 4.82571 4.95915 4.98392 5.06510 5.11891 5.16549 5.22224 5.28043 5.37464 5.41070 5.44659 5.54783 5.59593 5.63830 5.69130 5.75734 5.82144 5.86927 5.93178 5.96184 6.01822 6.06267 6.15088 6.17434 6.25660 6.35729 6.39822 6.53700 6.53881 6.75151 6.91177 7.02788 7.14092 7.16823 8.03435 8.32579 8.75453 9.53515 10.92725 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.005227 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.603471 B = 5355.644073 C = 5851.427981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.034 3.966 4 C 0.112 3.888 5 N -1.001 6.001 6 C 0.134 3.866 7 C -0.121 4.121 8 C -0.146 4.146 9 C -0.142 4.142 10 S 2.612 3.388 11 O -0.966 6.966 12 O -0.947 6.947 13 C -0.567 4.567 14 C 0.021 3.979 15 C -0.588 4.588 16 H 0.061 0.939 17 C 0.039 3.961 18 N -0.899 5.899 19 Si 1.062 2.938 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.285 1.285 23 C -0.191 4.191 24 C -0.165 4.165 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.274 0.726 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -12.067 9.670 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.303 6.303 3 C -0.044 4.044 4 C -0.014 4.014 5 N -0.835 5.835 6 C 0.009 3.991 7 C -0.141 4.141 8 C -0.203 4.203 9 C -0.200 4.200 10 S 2.709 3.291 11 O -0.956 6.956 12 O -0.937 6.937 13 C -0.699 4.699 14 C 0.019 3.981 15 C -0.625 4.625 16 H 0.079 0.921 17 C -0.168 4.168 18 N -0.533 5.533 19 Si 0.889 3.111 20 H -0.206 1.206 21 H -0.207 1.207 22 H -0.211 1.211 23 C -0.229 4.229 24 C -0.204 4.204 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.083 -10.347 9.772 14.233 hybrid contribution -0.735 -1.542 -0.352 1.744 sum -0.652 -11.889 9.420 15.183 Atomic orbital electron populations 1.22736 0.81548 1.02362 1.00109 1.87857 1.19234 1.27802 1.95432 1.23249 0.95017 0.85014 1.01123 1.21597 0.91490 1.00525 0.87795 1.57795 1.83071 1.15813 1.26836 1.21275 0.97189 0.79107 1.01563 1.21611 0.99077 0.95714 0.97679 1.21917 1.00906 1.01524 0.95940 1.21755 1.01525 0.95003 1.01749 1.05049 0.77333 0.73117 0.73588 1.93493 1.60717 1.68857 1.72555 1.93520 1.79757 1.45533 1.74936 1.30199 1.20444 1.06830 1.12449 1.18570 1.01080 0.95026 0.83411 1.21380 0.94981 0.89486 1.56687 0.92064 1.25806 0.94507 1.04420 0.92058 1.70767 1.13297 1.25856 1.43335 0.83652 0.75636 0.74697 0.77116 1.20649 1.20669 1.21126 1.23056 0.97563 0.97794 1.04448 1.22794 0.91914 1.01939 1.03767 0.93938 0.89938 0.94296 0.92221 0.92707 0.88879 0.87309 0.89446 0.91019 0.90143 0.93196 0.92237 0.92654 0.92578 0.92739 0.92762 0.85939 0.88282 0.91464 0.89275 0.90532 0.91267 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.89 9.10 -35.23 -0.32 -5.21 16 3 C 0.03 0.45 6.28 37.16 0.23 0.68 16 4 C 0.11 1.54 5.09 -4.04 -0.02 1.52 16 5 N -1.00 -15.76 2.42 -114.38 -0.28 -16.04 16 6 C 0.13 1.85 4.67 -4.03 -0.02 1.83 16 7 C -0.12 -1.55 3.17 -90.62 -0.29 -1.84 16 8 C -0.15 -1.68 7.64 37.15 0.28 -1.39 16 9 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 10 S 2.61 53.88 5.09 -107.50 -0.55 53.33 16 11 O -0.97 -21.35 16.52 -57.54 -0.95 -22.30 16 12 O -0.95 -22.60 16.16 -57.54 -0.93 -23.53 16 13 C -0.57 -11.99 5.91 37.16 0.22 -11.77 16 14 C 0.02 0.52 0.91 -155.66 -0.14 0.38 16 15 C -0.59 -16.32 8.11 -34.44 -0.28 -16.60 16 16 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 17 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 18 N -0.90 -25.63 13.57 55.43 0.75 -24.88 16 19 Si 1.06 25.13 29.91 -169.99 -5.08 20.04 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.19 -4.23 9.96 -26.70 -0.27 -4.50 16 24 C -0.17 -3.72 8.71 -26.69 -0.23 -3.95 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.81 7.03 -51.93 -0.36 0.44 16 30 H 0.09 1.08 5.44 -51.92 -0.28 0.79 16 31 H 0.11 1.58 6.83 -51.93 -0.35 1.23 16 32 H 0.09 1.08 6.69 -51.93 -0.35 0.74 16 33 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 34 H 0.08 1.22 7.64 -51.93 -0.40 0.82 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.74 6.46 -51.93 -0.34 0.41 16 37 H 0.05 0.57 7.56 -51.93 -0.39 0.18 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.12 2.66 6.80 -51.92 -0.35 2.30 16 42 H 0.10 1.80 8.10 -51.92 -0.42 1.38 16 43 H 0.27 7.65 6.22 -40.82 -0.25 7.39 16 44 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -32.71 382.10 -8.93 -41.64 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.18 Total: 5.56 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 0.85 Total: -34.38 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.48 Total: -40.92 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -2.20 Total: -51.04 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.04 kcal Atomic # 16 Polarization: 53.88 SS G_CDS: -0.55 Total: 53.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.71 -8.93 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451029826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.532 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds