Wall clock time and date at job start Tue Mar 31 2020 13:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00058 * 2 1 4 4 C 1.52997 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00191 * 4 3 2 6 6 C 1.46507 * 119.99787 * 274.32737 * 5 4 3 7 7 C 1.53007 * 109.46686 * 272.59613 * 6 5 4 8 8 C 1.52995 * 109.47131 * 56.24774 * 7 6 5 9 9 C 1.52997 * 109.46503 * 176.25042 * 7 6 5 10 10 S 1.65590 * 119.99962 * 94.32445 * 5 4 3 11 11 O 1.42102 * 104.27955 * 153.93430 * 10 5 4 12 12 O 1.42095 * 104.28092 * 26.07284 * 10 5 4 13 13 C 1.81398 * 104.45159 * 270.00053 * 10 5 4 14 14 C 1.52996 * 109.47393 * 186.15010 * 13 10 5 15 15 C 1.50700 * 115.55193 * 295.90831 * 14 13 10 16 16 H 1.08006 * 119.99522 * 95.53615 * 15 14 13 17 17 C 1.37872 * 120.00341 * 275.53273 * 15 14 13 18 18 N 1.31520 * 119.99630 * 6.43707 * 17 15 14 19 19 Si 1.86793 * 120.00163 * 186.42963 * 17 15 14 20 20 H 1.48504 * 109.47466 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47426 * 300.00758 * 19 17 15 22 22 H 1.48502 * 109.47087 * 60.00347 * 19 17 15 23 23 C 1.53001 * 117.49928 * 81.58622 * 14 13 10 24 24 C 1.53006 * 117.49993 * 150.24212 * 14 13 10 25 25 H 1.08993 * 109.47393 * 59.99625 * 1 2 3 26 26 H 1.09004 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46775 * 299.99379 * 1 2 3 28 28 H 1.09007 * 109.46912 * 60.00640 * 3 2 1 29 29 H 1.09002 * 109.47525 * 300.00747 * 3 2 1 30 30 H 1.09008 * 109.47106 * 305.00139 * 4 3 2 31 31 H 1.09000 * 109.47332 * 185.00615 * 4 3 2 32 32 H 1.08995 * 109.46848 * 32.59160 * 6 5 4 33 33 H 1.08992 * 109.46740 * 152.59675 * 6 5 4 34 34 H 1.08999 * 109.46912 * 296.24734 * 7 6 5 35 35 H 1.08997 * 109.46800 * 173.26058 * 8 7 6 36 36 H 1.08997 * 109.47026 * 293.26311 * 8 7 6 37 37 H 1.09002 * 109.47552 * 53.26582 * 8 7 6 38 38 H 1.08996 * 109.47816 * 59.99795 * 9 7 6 39 39 H 1.09004 * 109.46952 * 180.02562 * 9 7 6 40 40 H 1.09008 * 109.47369 * 299.99719 * 9 7 6 41 41 H 1.09002 * 109.47098 * 66.14772 * 13 10 5 42 42 H 1.09000 * 109.47136 * 306.15337 * 13 10 5 43 43 H 0.96994 * 120.00576 * 355.26617 * 18 17 15 44 44 H 1.09002 * 117.49800 * 215.00521 * 23 14 13 45 45 H 1.09002 * 117.49582 * 0.02562 * 23 14 13 46 46 H 1.09007 * 117.49822 * 359.97346 * 24 14 13 47 47 H 1.08997 * 117.50350 * 144.97347 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0144 -0.8952 -1.3732 7 6 5.3652 -1.4124 -0.8741 8 6 5.5943 -0.9369 0.5619 9 6 5.3712 -2.9419 -0.9122 10 16 4.4294 1.5131 -2.5318 11 8 5.3297 0.6986 -3.2703 12 8 4.8627 2.7262 -1.9321 13 6 2.8970 1.7766 -3.4660 14 6 3.2134 2.5189 -4.7659 15 6 3.7596 3.9138 -4.6016 16 1 4.8265 4.0811 -4.6163 17 6 2.8974 4.9763 -4.4325 18 7 1.6082 4.7603 -4.2877 19 14 3.5603 6.7225 -4.4088 20 1 2.4382 7.6755 -4.2139 21 1 4.5320 6.8681 -3.2953 22 1 4.2380 7.0122 -5.6980 23 6 3.7319 1.6914 -5.9438 24 6 2.3079 2.2522 -5.9701 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6886 1.8463 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 3.8514 0.5680 0.8410 31 1 3.9785 2.1764 0.0890 32 1 3.2148 -1.3305 -0.7739 33 1 3.8807 -1.1772 -2.4174 34 1 6.1598 -1.0298 -1.5147 35 1 6.4967 -1.4018 0.9589 36 1 5.7093 0.1469 0.5718 37 1 4.7401 -1.2173 1.1782 38 1 5.2079 -3.2806 -1.9352 39 1 6.3333 -3.3104 -0.5562 40 1 4.5765 -3.3244 -0.2716 41 1 2.2046 2.3695 -2.8684 42 1 2.4432 0.8134 -3.6989 43 1 1.2550 3.8605 -4.3683 44 1 4.4683 2.1558 -6.5997 45 1 3.8473 0.6181 -5.7926 46 1 1.4871 1.5475 -5.8364 47 1 2.1070 3.0856 -6.6432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451029826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:36 Heat of formation + Delta-G solvation = -128.344220 kcal Electronic energy + Delta-G solvation = -27545.380606 eV Core-core repulsion = 23855.194842 eV Total energy + Delta-G solvation = -3690.185765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.47207 -38.93389 -38.27012 -37.84370 -36.83033 -34.82557 -34.06884 -30.77769 -30.03055 -28.09000 -27.39821 -27.08316 -26.13561 -23.51587 -23.20625 -21.65766 -21.32382 -19.76707 -18.84757 -18.59417 -17.66883 -17.20038 -17.12041 -16.63321 -16.12350 -16.07846 -15.84204 -15.65278 -15.27959 -15.04629 -14.77659 -14.56430 -13.92040 -13.82119 -13.74381 -13.39795 -13.15741 -13.13539 -13.10677 -12.97220 -12.80267 -12.68831 -12.68006 -12.48526 -12.40099 -12.16223 -12.09523 -11.94881 -11.92459 -11.63583 -11.54389 -11.40494 -10.64413 -10.58797 -10.56172 -10.32346 -9.82057 -8.64211 -6.41887 -0.62395 1.51182 1.57698 1.77289 1.85630 2.52112 2.83331 2.89211 3.09849 3.13557 3.28769 3.59955 3.87041 3.98389 3.99892 4.08775 4.14147 4.24180 4.28762 4.34433 4.38915 4.40068 4.55761 4.57722 4.59101 4.65455 4.77135 4.77193 4.84055 4.86767 4.88329 4.96316 4.97645 5.02290 5.08692 5.15301 5.21974 5.31698 5.36844 5.46050 5.52053 5.74299 5.99003 6.12895 6.20224 6.61381 7.40786 8.77206 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.005227 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.603471 B = 5355.644073 C = 5851.427981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.036 3.964 4 C 0.107 3.893 5 N -0.989 5.989 6 C 0.129 3.871 7 C -0.124 4.124 8 C -0.145 4.145 9 C -0.138 4.138 10 S 2.622 3.378 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.563 4.563 14 C -0.013 4.013 15 C -0.603 4.603 16 H 0.038 0.962 17 C -0.001 4.001 18 N -0.916 5.916 19 Si 1.093 2.907 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.182 4.182 24 C -0.157 4.157 25 H 0.032 0.968 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.270 0.730 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -13.895 10.902 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C -0.042 4.042 4 C -0.018 4.018 5 N -0.826 5.826 6 C 0.004 3.996 7 C -0.144 4.144 8 C -0.202 4.202 9 C -0.196 4.196 10 S 2.719 3.281 11 O -0.976 6.976 12 O -0.978 6.978 13 C -0.694 4.694 14 C -0.015 4.015 15 C -0.640 4.640 16 H 0.057 0.943 17 C -0.204 4.204 18 N -0.551 5.551 19 Si 0.915 3.085 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.219 4.219 24 C -0.196 4.196 25 H 0.051 0.949 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.131 0.869 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.660 -12.186 10.985 16.419 hybrid contribution -0.507 -1.066 -0.700 1.373 sum -1.167 -13.252 10.285 16.815 Atomic orbital electron populations 1.22913 0.80264 1.03800 1.00305 1.87819 1.20585 1.27186 1.95490 1.23171 0.94400 0.85498 1.01176 1.21798 0.92163 1.00399 0.87463 1.57422 1.82917 1.16369 1.25941 1.21541 0.98542 0.77457 1.02027 1.21622 0.97382 0.97512 0.97903 1.21914 1.02329 1.00647 0.95319 1.21726 1.02768 0.92845 1.02233 1.04449 0.77087 0.72598 0.73930 1.93456 1.61552 1.68961 1.73603 1.93462 1.80666 1.47918 1.75778 1.30087 1.20778 1.07702 1.10869 1.18678 1.02938 0.94523 0.85333 1.21561 0.93993 0.91807 1.56644 0.94327 1.26861 0.94483 1.07429 0.91605 1.70841 1.13673 1.25690 1.44858 0.83265 0.75579 0.71749 0.77906 1.19866 1.20474 1.19408 1.23114 0.97185 0.98808 1.02833 1.22755 0.92866 1.01797 1.02160 0.94931 0.87918 0.92950 0.89991 0.94909 0.86096 0.88602 0.87308 0.91305 0.93149 0.92002 0.93700 0.90873 0.92688 0.91830 0.91010 0.86904 0.85295 0.91934 0.89847 0.88144 0.88684 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.67 16 2 O -0.39 -8.95 9.10 -148.98 -1.36 -10.30 16 3 C 0.04 0.89 6.28 71.98 0.45 1.34 16 4 C 0.11 2.82 5.09 86.38 0.44 3.26 16 5 N -0.99 -30.34 2.42 -515.77 -1.25 -31.59 16 6 C 0.13 3.30 4.67 86.38 0.40 3.71 16 7 C -0.12 -2.99 3.17 -10.79 -0.03 -3.02 16 8 C -0.14 -3.02 7.64 71.98 0.55 -2.47 16 9 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 10 S 2.62 109.14 5.09 -56.49 -0.29 108.85 16 11 O -0.99 -43.86 16.52 -127.65 -2.11 -45.97 16 12 O -0.99 -48.62 16.16 -127.65 -2.06 -50.68 16 13 C -0.56 -23.70 5.91 71.98 0.43 -23.27 16 14 C -0.01 -0.62 0.91 -52.93 -0.05 -0.66 16 15 C -0.60 -34.19 8.11 25.60 0.21 -33.98 16 16 H 0.04 2.30 7.82 -2.91 -0.02 2.27 16 17 C 0.00 -0.07 5.39 84.65 0.46 0.39 16 18 N -0.92 -52.77 13.57 21.45 0.29 -52.48 16 19 Si 1.09 51.06 29.91 68.60 2.05 53.11 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.18 -7.95 9.96 30.62 0.30 -7.64 16 24 C -0.16 -6.98 8.71 30.62 0.27 -6.71 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.03 0.96 7.03 -2.39 -0.02 0.94 16 30 H 0.12 2.52 5.44 -2.38 -0.01 2.50 16 31 H 0.10 2.80 6.83 -2.39 -0.02 2.79 16 32 H 0.11 2.36 6.69 -2.39 -0.02 2.34 16 33 H 0.07 1.80 7.69 -2.39 -0.02 1.78 16 34 H 0.05 1.52 7.64 -2.39 -0.02 1.50 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.04 1.06 6.46 -2.39 -0.02 1.04 16 37 H 0.07 1.26 7.56 -2.39 -0.02 1.24 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 41 H 0.11 4.97 6.80 -2.39 -0.02 4.95 16 42 H 0.13 4.49 8.10 -2.39 -0.02 4.47 16 43 H 0.27 15.24 6.22 -92.71 -0.58 14.66 16 44 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 45 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 46 H 0.09 3.68 8.14 -2.38 -0.02 3.66 16 47 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -71.21 382.10 1.74 -69.47 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 1.12 Total: 28.82 kcal Atomic # 6 Polarization: -74.56 SS G_CDS: 5.33 Total: -69.23 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -0.95 Total: -84.07 kcal Atomic # 8 Polarization: -101.42 SS G_CDS: -5.53 Total: -106.95 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Atomic # 16 Polarization: 109.14 SS G_CDS: -0.29 Total: 108.85 kcal Total: -71.21 1.74 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451029826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.875 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds