Wall clock time and date at job start Tue Mar 31 2020 13:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46891 * 2 1 4 4 C 1.53002 * 109.46891 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99992 * 275.00019 * 5 4 3 7 7 C 1.53002 * 109.46872 * 274.99916 * 6 5 4 8 8 O 1.42903 * 109.47265 * 65.00386 * 7 6 5 9 9 C 1.42898 * 113.99979 * 179.97438 * 8 7 6 10 10 S 1.65603 * 119.99841 * 95.00335 * 5 4 3 11 11 O 1.42097 * 104.27690 * 333.92554 * 10 5 4 12 12 O 1.42104 * 104.27200 * 206.07121 * 10 5 4 13 13 C 1.81403 * 104.45162 * 89.99771 * 10 5 4 14 14 C 1.52995 * 109.46965 * 187.86595 * 13 10 5 15 15 C 1.50701 * 115.55050 * 294.95747 * 14 13 10 16 16 H 1.08005 * 119.99971 * 95.18383 * 15 14 13 17 17 C 1.37881 * 120.00265 * 274.91106 * 15 14 13 18 18 N 1.31510 * 119.99761 * 6.08189 * 17 15 14 19 19 Si 1.86794 * 120.00289 * 186.07996 * 17 15 14 20 20 H 1.48506 * 109.46947 * 60.00073 * 19 17 15 21 21 H 1.48500 * 109.47328 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47165 * 300.00365 * 19 17 15 23 23 C 1.52999 * 117.50232 * 80.63063 * 14 13 10 24 24 C 1.52996 * 117.50050 * 149.29366 * 14 13 10 25 25 H 1.09002 * 109.47127 * 60.00070 * 1 2 3 26 26 H 1.09004 * 109.46808 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46788 * 300.00059 * 1 2 3 28 28 H 1.08996 * 109.46788 * 239.99941 * 2 1 3 29 29 H 1.09002 * 109.47127 * 119.99930 * 2 1 3 30 30 H 1.08996 * 109.47453 * 60.00349 * 3 2 1 31 31 H 1.08998 * 109.47657 * 299.99814 * 3 2 1 32 32 H 1.09004 * 109.47530 * 60.00260 * 4 3 2 33 33 H 1.09002 * 109.47127 * 299.99930 * 4 3 2 34 34 H 1.09001 * 109.47261 * 34.99847 * 6 5 4 35 35 H 1.09001 * 109.47132 * 155.00209 * 6 5 4 36 36 H 1.08999 * 109.46811 * 184.99949 * 7 6 5 37 37 H 1.08995 * 109.47451 * 305.00042 * 7 6 5 38 38 H 1.08999 * 109.46915 * 59.99866 * 9 8 7 39 39 H 1.09006 * 109.46635 * 179.97438 * 9 8 7 40 40 H 1.08996 * 109.47143 * 300.00060 * 9 8 7 41 41 H 1.09006 * 109.46708 * 67.86545 * 13 10 5 42 42 H 1.08999 * 109.47165 * 307.86446 * 13 10 5 43 43 H 0.96997 * 120.00272 * 185.10004 * 18 17 15 44 44 H 1.08999 * 117.50094 * 215.00195 * 23 14 13 45 45 H 1.09000 * 117.49627 * 0.02562 * 23 14 13 46 46 H 1.09007 * 117.49624 * 359.97302 * 24 14 13 47 47 H 1.09000 * 117.50356 * 144.96802 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1987 3.5505 -1.2642 7 6 5.5560 3.2253 -1.8913 8 8 5.5984 1.8412 -2.2442 9 6 6.8300 1.4312 -2.8417 10 16 4.4516 3.5636 1.4285 11 8 3.6599 2.8935 2.3997 12 8 4.2728 4.9487 1.1665 13 6 6.2091 3.1824 1.6668 14 6 6.6479 3.6478 3.0567 15 6 6.6048 5.1364 3.2873 16 1 5.7389 5.5863 3.7503 17 6 7.6731 5.9234 2.9123 18 7 8.6769 5.3955 2.2466 19 14 7.6945 7.7392 3.3498 20 1 7.6358 7.8935 4.8256 21 1 8.9432 8.3575 2.8362 22 1 6.5211 8.4104 2.7349 23 6 6.3180 2.7393 4.2428 24 6 7.7615 2.8580 3.7472 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9338 0.9286 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 3.4025 3.2511 -1.9458 35 1 4.1326 4.6222 -1.0766 36 1 5.6980 3.8327 -2.7852 37 1 6.3484 3.4421 -1.1751 38 1 7.6491 1.6109 -2.1454 39 1 6.7822 0.3685 -3.0797 40 1 6.9981 2.0014 -3.7553 41 1 6.7986 3.6973 0.9082 42 1 6.3628 2.1069 1.5785 43 1 9.4612 5.9302 2.0472 44 1 6.0698 3.2184 5.1899 45 1 5.7887 1.8099 4.0329 46 1 8.1812 2.0064 3.2115 47 1 8.4632 3.4150 4.3680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451184179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:40 Heat of formation + Delta-G solvation = -128.432327 kcal Electronic energy + Delta-G solvation = -27026.297615 eV Core-core repulsion = 23336.108029 eV Total energy + Delta-G solvation = -3690.189585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.23782 -38.59204 -38.08919 -37.55507 -36.74357 -35.15568 -34.09911 -31.27812 -29.89399 -28.85801 -27.51650 -27.00651 -24.43147 -23.40931 -22.99821 -21.89970 -21.32672 -19.71918 -18.66785 -18.39727 -17.52763 -17.06794 -16.89086 -16.71738 -16.46785 -16.13345 -15.92988 -15.74213 -15.32725 -14.95953 -14.75352 -14.05402 -13.81877 -13.75210 -13.66732 -13.54875 -13.22794 -13.17081 -13.05603 -12.92942 -12.85040 -12.80739 -12.54162 -12.44886 -12.24396 -12.18007 -12.03548 -11.95005 -11.84113 -11.76972 -11.56137 -11.31175 -10.87926 -10.60344 -10.51899 -10.14148 -9.72969 -8.21351 -6.36596 -0.53360 1.38091 1.40955 1.47613 1.91956 2.39052 2.87868 2.98552 3.06638 3.32842 3.39836 3.67941 4.01879 4.03765 4.09960 4.17161 4.26196 4.32259 4.38121 4.43314 4.49061 4.55123 4.60136 4.61082 4.61638 4.80087 4.81535 4.81666 4.87578 4.92097 4.94163 4.95769 5.03669 5.16626 5.19074 5.20607 5.34732 5.43716 5.49512 5.54023 5.57020 5.69132 5.76945 6.20353 6.24659 6.69841 7.36378 8.86200 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.004874 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.587760 B = 5743.082933 C = 6468.129305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.139 4.139 4 C 0.124 3.876 5 N -0.995 5.995 6 C 0.113 3.887 7 C 0.036 3.964 8 O -0.394 6.394 9 C 0.024 3.976 10 S 2.616 3.384 11 O -0.986 6.986 12 O -0.991 6.991 13 C -0.550 4.550 14 C 0.010 3.990 15 C -0.535 4.535 16 H 0.047 0.953 17 C 0.044 3.956 18 N -0.891 5.891 19 Si 0.932 3.068 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.276 1.276 23 C -0.195 4.195 24 C -0.136 4.136 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.266 0.734 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 -11.107 -11.710 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.178 4.178 4 C -0.001 4.001 5 N -0.832 5.832 6 C -0.012 4.012 7 C -0.042 4.042 8 O -0.313 6.313 9 C -0.073 4.073 10 S 2.714 3.286 11 O -0.976 6.976 12 O -0.982 6.982 13 C -0.682 4.682 14 C 0.008 3.992 15 C -0.572 4.572 16 H 0.065 0.935 17 C -0.159 4.159 18 N -0.526 5.526 19 Si 0.757 3.243 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.202 1.202 23 C -0.233 4.233 24 C -0.175 4.175 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.764 -10.662 -11.322 17.382 hybrid contribution 1.294 1.156 0.232 1.751 sum -6.469 -9.506 -11.089 15.975 Atomic orbital electron populations 1.21768 0.95352 1.02142 1.01638 1.21446 0.96376 0.95188 1.02718 1.22051 0.95450 0.98403 1.01921 1.21485 0.94171 0.80455 1.03986 1.57496 1.79988 1.24447 1.21237 1.21590 0.97575 0.97116 0.84894 1.23174 0.97867 0.83626 0.99578 1.87819 1.37074 1.25156 1.81237 1.22910 0.85741 1.01753 0.96855 1.04666 0.77736 0.73207 0.73024 1.93454 1.67381 1.76053 1.60749 1.93454 1.86342 1.34085 1.84280 1.29960 1.22722 1.08829 1.06706 1.18425 1.02282 0.92106 0.86424 1.20674 1.03839 0.90869 1.41812 0.93521 1.25492 0.95402 1.01696 0.93286 1.70042 1.06897 1.38365 1.37339 0.86005 0.77809 0.81274 0.79179 1.19291 1.19686 1.20164 1.23224 0.99431 1.01332 0.99266 1.22485 0.90557 1.00984 1.03509 0.92308 0.91563 0.93725 0.90281 0.92107 0.93780 0.90912 0.87502 0.91159 0.86847 0.88439 0.89999 0.94537 0.94823 0.88016 0.92967 0.86383 0.85726 0.92530 0.89914 0.88479 0.89595 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.12 -2.27 5.93 30.59 0.18 -2.09 16 3 C -0.14 -3.37 5.54 30.59 0.17 -3.20 16 4 C 0.12 3.21 5.10 86.38 0.44 3.65 16 5 N -0.99 -30.83 2.70 -515.76 -1.39 -32.23 16 6 C 0.11 2.99 6.11 86.38 0.53 3.52 16 7 C 0.04 0.89 6.28 71.98 0.45 1.34 16 8 O -0.39 -9.11 9.02 -148.98 -1.34 -10.45 16 9 C 0.02 0.43 11.01 113.37 1.25 1.68 16 10 S 2.62 109.03 5.09 -56.49 -0.29 108.74 16 11 O -0.99 -43.95 16.75 -127.65 -2.14 -46.09 16 12 O -0.99 -48.45 16.28 -127.65 -2.08 -50.52 16 13 C -0.55 -23.44 6.00 71.98 0.43 -23.00 16 14 C 0.01 0.48 1.34 -52.93 -0.07 0.41 16 15 C -0.53 -29.96 8.26 25.60 0.21 -29.75 16 16 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 17 C 0.04 2.43 5.39 84.66 0.46 2.89 16 18 N -0.89 -48.97 12.92 21.45 0.28 -48.69 16 19 Si 0.93 43.93 29.54 68.60 2.03 45.96 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 C -0.20 -8.57 9.96 30.62 0.30 -8.26 16 24 C -0.14 -6.19 9.42 30.62 0.29 -5.90 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.31 7.90 -2.39 -0.02 1.29 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 2.36 6.60 -2.38 -0.02 2.35 16 33 H 0.07 1.88 7.61 -2.39 -0.02 1.86 16 34 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 35 H 0.10 2.82 6.82 -2.39 -0.02 2.80 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.06 7.16 -2.39 -0.02 1.04 16 38 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 1.45 8.14 -2.38 -0.02 1.44 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.12 5.31 7.20 -2.39 -0.02 5.29 16 42 H 0.12 4.46 8.09 -2.39 -0.02 4.44 16 43 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 44 H 0.08 3.63 8.14 -2.39 -0.02 3.62 16 45 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 46 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 47 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -68.35 393.47 1.33 -67.02 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.91 Total: 26.90 kcal Atomic # 6 Polarization: -65.98 SS G_CDS: 5.35 Total: -60.63 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.12 Total: -80.92 kcal Atomic # 8 Polarization: -101.51 SS G_CDS: -5.56 Total: -107.07 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 109.03 SS G_CDS: -0.29 Total: 108.74 kcal Total: -68.35 1.33 -67.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451184179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.410 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds