Wall clock time and date at job start Tue Mar 31 2020 12:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 C 1.53001 * 109.47189 * 239.99895 * 2 1 3 5 5 C 1.53010 * 109.46789 * 119.99985 * 2 1 3 6 6 H 1.08997 * 109.46623 * 294.07860 * 5 2 1 7 7 C 1.53001 * 109.46558 * 174.08038 * 5 2 1 8 8 C 1.53000 * 109.46743 * 174.99797 * 7 5 2 9 9 O 1.42894 * 109.47553 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47107 * 54.07775 * 5 2 1 11 11 S 1.65593 * 120.00141 * 230.70579 * 10 5 2 12 12 O 1.42103 * 104.27691 * 304.44028 * 11 10 5 13 13 O 1.42102 * 104.27717 * 176.58280 * 11 10 5 14 14 C 1.81402 * 104.44993 * 60.50970 * 11 10 5 15 15 C 1.52994 * 109.47060 * 183.37187 * 14 11 10 16 16 C 1.50696 * 115.55356 * 305.43916 * 15 14 11 17 17 H 1.07999 * 120.00294 * 95.54887 * 16 15 14 18 18 C 1.37884 * 119.99665 * 275.27743 * 16 15 14 19 19 N 1.31509 * 120.00280 * 356.05381 * 18 16 15 20 20 Si 1.86804 * 119.99779 * 176.05706 * 18 16 15 21 21 H 1.48501 * 109.46808 * 89.99738 * 20 18 16 22 22 H 1.48499 * 109.46915 * 209.99525 * 20 18 16 23 23 H 1.48497 * 109.46832 * 329.99808 * 20 18 16 24 24 C 1.52999 * 117.49718 * 91.11017 * 15 14 11 25 25 C 1.53006 * 117.49431 * 159.76756 * 15 14 11 26 26 H 1.08993 * 109.47346 * 294.31264 * 1 2 3 27 27 H 1.08998 * 109.47227 * 54.31386 * 1 2 3 28 28 H 1.09008 * 109.46904 * 174.30830 * 1 2 3 29 29 H 1.08998 * 109.47104 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47285 * 299.99959 * 3 2 1 31 31 H 1.09003 * 109.46959 * 60.00247 * 3 2 1 32 32 H 1.09003 * 109.46990 * 299.99711 * 4 2 1 33 33 H 1.08991 * 109.47338 * 60.00154 * 4 2 1 34 34 H 1.09004 * 109.47021 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.47408 * 294.99578 * 7 5 2 36 36 H 1.08999 * 109.47593 * 55.00163 * 7 5 2 37 37 H 1.09001 * 109.47713 * 300.00057 * 8 7 5 38 38 H 1.09005 * 109.47455 * 59.99928 * 8 7 5 39 39 H 0.96692 * 114.00876 * 179.97438 * 9 8 7 40 40 H 0.97001 * 119.99701 * 50.71587 * 10 5 2 41 41 H 1.09001 * 109.46624 * 63.36917 * 14 11 10 42 42 H 1.09002 * 109.46833 * 303.37311 * 14 11 10 43 43 H 0.97002 * 120.00468 * 185.01620 * 19 18 16 44 44 H 1.09000 * 117.49915 * 214.99667 * 24 15 14 45 45 H 1.09002 * 117.50112 * 0.02562 * 24 15 14 46 46 H 1.08990 * 117.50274 * 359.97438 * 25 15 14 47 47 H 1.09007 * 117.49222 * 144.97549 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2494 6 1 1.7657 -0.1499 2.1361 7 6 3.5627 -0.8514 1.1771 8 6 4.0849 -1.4596 2.4803 9 8 5.5070 -1.5817 2.4128 10 7 1.4387 -2.0552 1.3227 11 16 0.7043 -2.5567 2.7196 12 8 1.7060 -2.4051 3.7161 13 8 0.1781 -3.8371 2.3986 14 6 -0.6374 -1.3638 2.9791 15 6 -1.3472 -1.6737 4.2986 16 6 -1.8600 -3.0831 4.4454 17 1 -1.2637 -3.8242 4.9568 18 6 -3.0930 -3.4251 3.9317 19 7 -3.8549 -2.5045 3.3825 20 14 -3.6813 -5.1960 4.0158 21 1 -4.4262 -5.4104 5.2825 22 1 -4.5742 -5.4763 2.8629 23 1 -2.5111 -6.1090 3.9691 24 6 -0.8333 -0.9741 5.5585 25 6 -2.1683 -0.5528 4.9392 26 1 -0.3634 0.4231 0.9364 27 1 -0.3633 0.5995 -0.8347 28 1 -0.3633 -1.0227 -0.1019 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 3.8330 -1.4965 0.3412 36 1 4.0052 0.1343 1.0333 37 1 3.8146 -0.8145 3.3164 38 1 3.6424 -2.4453 2.6243 39 1 5.9075 -1.9607 3.2072 40 1 1.4709 -2.6447 0.5530 41 1 -1.3503 -1.4345 2.1576 42 1 -0.2249 -0.3555 3.0165 43 1 -4.7510 -2.7295 3.0869 44 1 -0.8662 -1.5332 6.4935 45 1 0.0102 -0.2927 5.4473 46 1 -2.2024 0.4054 4.4209 47 1 -3.0796 -0.8349 5.4665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451218266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:38 Heat of formation + Delta-G solvation = -143.516456 kcal Electronic energy + Delta-G solvation = -27585.625569 eV Core-core repulsion = 23894.781886 eV Total energy + Delta-G solvation = -3690.843682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.11672 -38.53992 -37.87138 -37.49399 -36.72039 -34.40415 -34.07783 -31.75397 -29.94444 -28.14473 -27.87852 -27.44330 -26.12426 -22.94175 -22.54602 -21.55233 -20.24069 -19.92640 -18.54109 -18.21367 -18.14750 -17.20971 -16.86802 -16.60489 -16.25034 -15.97567 -15.52243 -15.34966 -15.05921 -14.87160 -14.72736 -14.12366 -13.98226 -13.81674 -13.71763 -13.11295 -13.06964 -12.91276 -12.86242 -12.85448 -12.77364 -12.62334 -12.59388 -12.44594 -12.23784 -12.13476 -12.02053 -11.84487 -11.79267 -11.56002 -11.47017 -11.28094 -10.95766 -10.76926 -10.51245 -10.34146 -9.85755 -8.19940 -6.36012 -0.45246 1.34014 1.38233 1.50291 2.07783 2.38802 3.00903 3.07560 3.21589 3.36338 3.55045 3.81812 3.86112 3.98315 4.08292 4.19415 4.20874 4.38019 4.40498 4.52664 4.57134 4.60514 4.70150 4.73999 4.78093 4.86304 4.91799 4.93884 4.99850 5.01932 5.14723 5.17030 5.21405 5.23348 5.26505 5.29096 5.42213 5.45608 5.56341 5.62419 5.64974 5.70991 6.17659 6.21875 6.70799 6.87016 7.38161 8.85857 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.005023 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.373680 B = 5573.246866 C = 5943.379722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.146 4.146 5 C 0.160 3.840 6 H 0.088 0.912 7 C -0.126 4.126 8 C 0.068 3.932 9 O -0.591 6.591 10 N -1.111 6.111 11 S 2.622 3.378 12 O -0.987 6.987 13 O -0.997 6.997 14 C -0.549 4.549 15 C 0.009 3.991 16 C -0.536 4.536 17 H 0.045 0.955 18 C 0.048 3.952 19 N -0.889 5.889 20 Si 0.926 3.074 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.278 1.278 24 C -0.193 4.193 25 C -0.133 4.133 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.393 0.607 40 H 0.419 0.581 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.265 0.735 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 9.269 -8.294 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.203 4.203 5 C 0.053 3.947 6 H 0.106 0.894 7 C -0.165 4.165 8 C -0.010 4.010 9 O -0.399 6.399 10 N -0.871 5.871 11 S 2.720 3.280 12 O -0.977 6.977 13 O -0.987 6.987 14 C -0.681 4.681 15 C 0.007 3.993 16 C -0.573 4.573 17 H 0.064 0.936 18 C -0.155 4.155 19 N -0.525 5.525 20 Si 0.751 3.249 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.230 4.230 25 C -0.172 4.172 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.242 0.758 40 H 0.255 0.745 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.287 8.877 -8.370 17.316 hybrid contribution -1.141 -1.239 0.329 1.717 sum 11.146 7.638 -8.041 15.723 Atomic orbital electron populations 1.22043 0.94648 1.01943 1.02539 1.20804 0.95512 0.96378 0.94309 1.21956 1.01845 0.93535 1.02845 1.21961 1.01726 1.00078 0.96542 1.20971 0.92237 0.81763 0.99736 0.89419 1.21987 0.94083 1.03140 0.97247 1.22336 0.80340 1.00082 0.98198 1.86318 1.20867 1.87099 1.45590 1.55666 1.73012 1.25771 1.32635 1.04337 0.75206 0.75212 0.73272 1.93464 1.56872 1.87303 1.60021 1.93490 1.81497 1.40330 1.83430 1.29888 1.15892 1.15184 1.07161 1.18379 1.00336 0.93243 0.87363 1.20697 1.04404 0.94109 1.38117 0.93647 1.25424 0.96765 0.99905 0.93419 1.70021 1.08751 1.34022 1.39702 0.86035 0.78304 0.82153 0.78378 1.19212 1.19922 1.20357 1.23217 0.97867 1.04169 0.97747 1.22428 0.93399 0.97842 1.03540 0.92677 0.91171 0.93365 0.91186 0.91223 0.92175 0.93019 0.91519 0.91295 0.90023 0.88370 0.93538 0.94365 0.75844 0.74468 0.85991 0.84941 0.92573 0.90325 0.88088 0.89501 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 7.91 71.98 0.57 -2.65 16 2 C -0.07 -1.21 0.63 -52.18 -0.03 -1.24 16 3 C -0.14 -2.02 8.25 71.98 0.59 -1.42 16 4 C -0.15 -2.31 7.83 71.98 0.56 -1.75 16 5 C 0.16 3.51 1.41 45.00 0.06 3.58 16 6 H 0.09 1.90 7.05 -2.39 -0.02 1.88 16 7 C -0.13 -2.66 4.44 30.59 0.14 -2.52 16 8 C 0.07 1.79 5.86 71.98 0.42 2.22 16 9 O -0.59 -14.40 13.66 -148.98 -2.03 -16.43 16 10 N -1.11 -30.51 3.81 -169.38 -0.65 -31.16 16 11 S 2.62 101.85 4.89 -56.49 -0.28 101.58 16 12 O -0.99 -40.19 15.12 -127.65 -1.93 -42.12 16 13 O -1.00 -48.45 17.25 -127.65 -2.20 -50.65 16 14 C -0.55 -21.37 5.05 71.98 0.36 -21.01 16 15 C 0.01 0.42 1.54 -52.93 -0.08 0.33 16 16 C -0.54 -29.56 7.44 25.60 0.19 -29.36 16 17 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 18 C 0.05 2.66 5.43 84.66 0.46 3.12 16 19 N -0.89 -48.84 12.68 21.45 0.27 -48.57 16 20 Si 0.93 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 24 C -0.19 -7.96 9.92 30.62 0.30 -7.66 16 25 C -0.13 -5.83 9.21 30.62 0.28 -5.55 16 26 H 0.05 1.20 7.04 -2.39 -0.02 1.19 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.14 7.66 -2.38 -0.02 1.12 16 29 H 0.07 0.86 6.49 -2.39 -0.02 0.84 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.88 6.90 -2.39 -0.02 0.86 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.98 6.45 -2.39 -0.02 0.97 16 35 H 0.08 1.66 6.64 -2.39 -0.02 1.64 16 36 H 0.10 1.72 6.38 -2.39 -0.02 1.71 16 37 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 38 H 0.04 1.18 6.14 -2.38 -0.01 1.16 16 39 H 0.39 6.67 9.12 -74.06 -0.68 5.99 16 40 H 0.42 10.36 7.56 -96.75 -0.73 9.63 16 41 H 0.12 4.99 8.14 -2.39 -0.02 4.97 16 42 H 0.13 4.05 6.83 -2.39 -0.02 4.03 16 43 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 44 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.06 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -70.00 374.97 -1.39 -71.40 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.44 Total: 33.04 kcal Atomic # 6 Polarization: -67.75 SS G_CDS: 3.83 Total: -63.92 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -0.37 Total: -79.72 kcal Atomic # 8 Polarization: -103.03 SS G_CDS: -6.17 Total: -109.20 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 101.85 SS G_CDS: -0.28 Total: 101.58 kcal Total: -70.00 -1.39 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451218266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.121 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds