Wall clock time and date at job start Tue Mar 31 2020 12:07:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52998 * 109.47247 * 2 1
4 4 C 1.53001 * 109.47044 * 180.02562 * 3 2 1
5 5 C 1.52998 * 109.47044 * 179.97438 * 4 3 2
6 6 H 1.08999 * 109.47525 * 304.99612 * 5 4 3
7 7 C 1.52997 * 109.47359 * 184.99633 * 5 4 3
8 8 O 1.42904 * 109.46815 * 304.99712 * 7 5 4
9 9 C 1.42901 * 113.99856 * 179.97438 * 8 7 5
10 10 N 1.46505 * 109.47258 * 64.99459 * 5 4 3
11 11 S 1.65598 * 120.00215 * 215.00056 * 10 5 4
12 12 O 1.42101 * 104.27547 * 308.92844 * 11 10 5
13 13 O 1.42100 * 104.27818 * 181.06983 * 11 10 5
14 14 C 1.81400 * 104.45118 * 64.99950 * 11 10 5
15 15 C 1.52999 * 109.47400 * 180.95144 * 14 11 10
16 16 C 1.50697 * 115.54785 * 294.67668 * 15 14 11
17 17 H 1.08006 * 119.99830 * 95.19030 * 16 15 14
18 18 C 1.37873 * 120.00139 * 274.91204 * 16 15 14
19 19 N 1.31516 * 119.99857 * 6.45083 * 18 16 15
20 20 Si 1.86801 * 119.99994 * 186.45025 * 18 16 15
21 21 H 1.48504 * 109.47021 * 90.00382 * 20 18 16
22 22 H 1.48503 * 109.46972 * 209.99716 * 20 18 16
23 23 H 1.48496 * 109.47302 * 330.00139 * 20 18 16
24 24 C 1.53002 * 117.49682 * 80.34758 * 15 14 11
25 25 C 1.53002 * 117.49685 * 149.00783 * 15 14 11
26 26 H 1.09000 * 109.47666 * 59.99747 * 1 2 3
27 27 H 1.09001 * 109.47511 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.47232 * 299.99967 * 1 2 3
29 29 H 1.09005 * 109.46838 * 240.00018 * 2 1 3
30 30 H 1.08995 * 109.47497 * 120.00681 * 2 1 3
31 31 H 1.08994 * 109.47449 * 59.99807 * 3 2 1
32 32 H 1.09002 * 109.47143 * 299.99897 * 3 2 1
33 33 H 1.08992 * 109.47517 * 60.00103 * 4 3 2
34 34 H 1.09002 * 109.46586 * 299.99650 * 4 3 2
35 35 H 1.08993 * 109.47244 * 64.99674 * 7 5 4
36 36 H 1.08999 * 109.47273 * 185.00293 * 7 5 4
37 37 H 1.08998 * 109.47603 * 180.02562 * 9 8 7
38 38 H 1.09003 * 109.47439 * 300.00772 * 9 8 7
39 39 H 1.09004 * 109.47012 * 59.99979 * 9 8 7
40 40 H 0.97003 * 119.99887 * 35.00185 * 10 5 4
41 41 H 1.09004 * 109.46763 * 60.95023 * 14 11 10
42 42 H 1.09003 * 109.47105 * 300.95726 * 14 11 10
43 43 H 0.97005 * 119.99500 * 185.09085 * 19 18 16
44 44 H 1.09000 * 117.49849 * 215.00105 * 24 15 14
45 45 H 1.09004 * 117.49909 * 0.02562 * 24 15 14
46 46 H 1.08995 * 117.50130 * 359.97438 * 25 15 14
47 47 H 1.08996 * 117.49590 * 144.97614 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 -0.0006
5 6 4.0800 2.8849 -0.0013
6 1 3.6451 3.4237 -0.8431
7 6 5.6047 2.8867 -0.1276
8 8 6.1696 2.0831 0.9104
9 6 7.5968 2.0170 0.8828
10 7 3.6929 3.5403 1.2505
11 16 3.2962 5.1481 1.2551
12 8 4.3813 5.7786 0.5885
13 8 3.0071 5.4339 2.6167
14 6 1.7889 5.2454 0.2504
15 6 1.3305 6.7022 0.1583
16 6 0.8891 7.3279 1.4562
17 1 1.5872 7.9093 2.0403
18 6 -0.4074 7.1630 1.8952
19 7 -1.2228 6.3577 1.2500
20 14 -1.0060 8.0835 3.4065
21 1 -1.5747 9.3924 2.9958
22 1 -2.0519 7.2826 4.0919
23 1 0.1327 8.3073 4.3330
24 6 2.0390 7.6029 -0.8554
25 6 0.6052 7.1351 -1.1174
26 1 -0.3634 0.5139 -0.8899
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8932 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8899
31 1 1.6767 1.9563 0.8899
32 1 1.6766 1.9563 -0.8900
33 1 3.9329 0.9288 -0.8908
34 1 3.9336 0.9285 0.8892
35 1 5.8895 2.4798 -1.0977
36 1 5.9755 3.9079 -0.0389
37 1 7.9474 1.3885 1.7013
38 1 7.9225 1.5918 -0.0666
39 1 8.0092 3.0201 0.9921
40 1 3.6689 3.0325 2.0766
41 1 1.0046 4.6462 0.7131
42 1 1.9941 4.8650 -0.7503
43 1 -2.1544 6.2977 1.5136
44 1 2.1859 8.6482 -0.5835
45 1 2.8315 7.1575 -1.4569
46 1 0.4550 6.3823 -1.8912
47 1 -0.1914 7.8724 -1.0179
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451222164.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:07:36
Heat of formation + Delta-G solvation = -119.284831 kcal
Electronic energy + Delta-G solvation = -26749.329001 eV
Core-core repulsion = 23059.536081 eV
Total energy + Delta-G solvation = -3689.792920 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-38.54884 -36.75955 -36.47810 -36.15578 -35.04879 -34.22204 -32.01896 -30.29157
-28.50574 -28.14235 -26.15721 -25.43789 -23.91811 -21.24045 -21.10941 -20.90140
-19.75385 -18.66858 -17.10568 -16.44846 -16.42042 -15.94625 -15.56325 -15.40275
-15.07653 -14.85402 -14.62696 -14.21228 -13.82852 -13.76009 -13.35712 -13.10369
-12.68751 -12.62421 -12.30822 -12.02194 -11.88118 -11.82274 -11.43374 -11.26982
-11.15289 -11.13624 -11.06319 -10.97575 -10.88459 -10.86318 -10.66584 -10.53223
-10.46791 -10.44636 -10.08935 -9.70962 -9.62498 -9.16213 -8.93608 -8.53611
-8.09249 -6.12707 -4.22381 1.11727 3.31126 3.37736 3.45322 3.46243
3.78974 4.40162 4.57103 4.59048 4.89165 4.96717 5.03958 5.12813
5.14816 5.16665 5.19065 5.26452 5.30271 5.36041 5.39546 5.46011
5.58560 5.68568 5.71293 5.78769 5.84340 5.87493 5.96640 6.00321
6.06361 6.18191 6.23192 6.26080 6.36837 6.43622 6.46770 6.61409
6.70611 6.98512 7.13924 7.24473 7.38870 7.40032 7.82550 8.21210
8.83680 9.49054 10.95590
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012056 B = 0.004910 C = 0.004130
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2321.943350 B = 5701.610882 C = 6778.200333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.121 4.121
3 C -0.129 4.129
4 C -0.118 4.118
5 C 0.160 3.840
6 H 0.093 0.907
7 C 0.041 3.959
8 O -0.383 6.383
9 C 0.031 3.969
10 N -1.119 6.119
11 S 2.604 3.396
12 O -0.978 6.978
13 O -0.948 6.948
14 C -0.553 4.553
15 C 0.043 3.957
16 C -0.510 4.510
17 H 0.068 0.932
18 C 0.081 3.919
19 N -0.874 5.874
20 Si 0.889 3.111
21 H -0.279 1.279
22 H -0.285 1.285
23 H -0.267 1.267
24 C -0.211 4.211
25 C -0.139 4.139
26 H 0.054 0.946
27 H 0.049 0.951
28 H 0.057 0.943
29 H 0.057 0.943
30 H 0.059 0.941
31 H 0.071 0.929
32 H 0.064 0.936
33 H 0.070 0.930
34 H 0.078 0.922
35 H 0.054 0.946
36 H 0.069 0.931
37 H 0.082 0.918
38 H 0.037 0.963
39 H 0.041 0.959
40 H 0.415 0.585
41 H 0.135 0.865
42 H 0.095 0.905
43 H 0.262 0.738
44 H 0.086 0.914
45 H 0.075 0.925
46 H 0.066 0.934
47 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.207 -12.757 -5.468 16.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.158 4.158
3 C -0.166 4.166
4 C -0.157 4.157
5 C 0.052 3.948
6 H 0.111 0.889
7 C -0.038 4.038
8 O -0.302 6.302
9 C -0.066 4.066
10 N -0.876 5.876
11 S 2.701 3.299
12 O -0.968 6.968
13 O -0.939 6.939
14 C -0.686 4.686
15 C 0.041 3.959
16 C -0.547 4.547
17 H 0.086 0.914
18 C -0.124 4.124
19 N -0.510 5.510
20 Si 0.716 3.284
21 H -0.205 1.205
22 H -0.210 1.210
23 H -0.191 1.191
24 C -0.248 4.248
25 C -0.178 4.178
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.076 0.924
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.089 0.911
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.096 0.904
35 H 0.072 0.928
36 H 0.087 0.913
37 H 0.101 0.899
38 H 0.056 0.944
39 H 0.059 0.941
40 H 0.248 0.752
41 H 0.153 0.847
42 H 0.114 0.886
43 H 0.072 0.928
44 H 0.105 0.895
45 H 0.093 0.907
46 H 0.084 0.916
47 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 9.443 -12.216 -4.988 16.226
hybrid contribution -0.789 -0.012 0.394 0.882
sum 8.654 -12.228 -4.594 15.669
Atomic orbital electron populations
1.21790 0.95900 1.01178 1.02372 1.21489 0.95878 0.96900 1.01558
1.21721 0.94916 0.96878 1.03097 1.21799 0.95660 0.95026 1.03222
1.20776 0.92133 0.95203 0.86729 0.88917 1.23217 0.94461 0.95920
0.90194 1.87856 1.19520 1.70546 1.52230 1.22718 0.81675 1.00944
1.01250 1.55961 1.84957 1.31361 1.15277 1.05215 0.76881 0.71884
0.75926 1.93483 1.51552 1.74037 1.77711 1.93559 1.86068 1.81681
1.32543 1.30010 1.18979 1.07791 1.11850 1.18295 0.99684 0.86055
0.91912 1.20541 0.97233 1.33183 1.03757 0.91356 1.24922 0.96809
0.93996 0.96647 1.70012 1.04955 1.34702 1.41340 0.86613 0.78850
0.79675 0.83294 1.20497 1.21036 1.19114 1.23223 0.95458 1.00596
1.05567 1.22530 0.93457 1.02464 0.99395 0.92656 0.93185 0.92408
0.92422 0.92209 0.91058 0.91765 0.91176 0.90359 0.92828 0.91283
0.89914 0.94410 0.94056 0.75179 0.84651 0.88636 0.92844 0.89540
0.90701 0.91574 0.89581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.63 9.91 37.15 0.37 -1.26 16
2 C -0.12 -1.21 5.93 -26.74 -0.16 -1.37 16
3 C -0.13 -1.44 5.10 -26.73 -0.14 -1.58 16
4 C -0.12 -1.25 4.53 -26.73 -0.12 -1.37 16
5 C 0.16 2.02 2.47 -67.93 -0.17 1.85 16
6 H 0.09 1.08 7.13 -51.93 -0.37 0.71 16
7 C 0.04 0.50 5.77 37.16 0.21 0.72 16
8 O -0.38 -4.83 9.87 -35.23 -0.35 -5.17 16
9 C 0.03 0.30 11.01 101.05 1.11 1.41 16
10 N -1.12 -17.00 4.76 -4.89 -0.02 -17.03 16
11 S 2.60 52.31 5.18 -107.50 -0.56 51.75 16
12 O -0.98 -20.96 17.05 -57.54 -0.98 -21.94 16
13 O -0.95 -22.94 17.47 -57.54 -1.01 -23.95 16
14 C -0.55 -11.34 5.82 37.16 0.22 -11.13 16
15 C 0.04 1.03 1.33 -155.66 -0.21 0.82 16
16 C -0.51 -13.93 7.96 -34.44 -0.27 -14.20 16
17 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16
18 C 0.08 2.20 5.39 -17.82 -0.10 2.11 16
19 N -0.87 -23.91 12.93 55.43 0.72 -23.20 16
20 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16
21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
24 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16
25 C -0.14 -3.13 9.44 -26.69 -0.25 -3.38 16
26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16
32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.08 0.86 7.73 -51.93 -0.40 0.45 16
35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.07 0.99 7.36 -51.93 -0.38 0.60 16
37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
40 H 0.41 5.86 8.80 -34.47 -0.30 5.55 16
41 H 0.14 2.90 8.14 -51.92 -0.42 2.48 16
42 H 0.10 1.62 7.37 -51.92 -0.38 1.24 16
43 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16
44 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16
45 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16
46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
47 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16
LS Contribution 395.31 15.07 5.96 5.96
Total: -1.00 -32.44 395.31 -9.58 -42.02
By element:
Atomic # 1 Polarization: 15.89 SS G_CDS: -8.55 Total: 7.34 kcal
Atomic # 6 Polarization: -32.45 SS G_CDS: 0.23 Total: -32.21 kcal
Atomic # 7 Polarization: -40.92 SS G_CDS: 0.69 Total: -40.22 kcal
Atomic # 8 Polarization: -48.73 SS G_CDS: -2.33 Total: -51.06 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal
Atomic # 16 Polarization: 52.31 SS G_CDS: -0.56 Total: 51.75 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -32.44 -9.58 -42.02 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451222164.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.264 kcal
(2) G-P(sol) polarization free energy of solvation -32.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds