Wall clock time and date at job start Tue Mar 31 2020 12:07:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52998 * 109.47247 * 2 1
4 4 C 1.53001 * 109.47044 * 180.02562 * 3 2 1
5 5 C 1.52998 * 109.47044 * 179.97438 * 4 3 2
6 6 H 1.08999 * 109.47525 * 304.99612 * 5 4 3
7 7 C 1.52997 * 109.47359 * 184.99633 * 5 4 3
8 8 O 1.42904 * 109.46815 * 304.99712 * 7 5 4
9 9 C 1.42901 * 113.99856 * 179.97438 * 8 7 5
10 10 N 1.46505 * 109.47258 * 64.99459 * 5 4 3
11 11 S 1.65598 * 120.00215 * 215.00056 * 10 5 4
12 12 O 1.42101 * 104.27547 * 308.92844 * 11 10 5
13 13 O 1.42100 * 104.27818 * 181.06983 * 11 10 5
14 14 C 1.81400 * 104.45118 * 64.99950 * 11 10 5
15 15 C 1.52999 * 109.47400 * 180.95144 * 14 11 10
16 16 C 1.50697 * 115.54785 * 294.67668 * 15 14 11
17 17 H 1.08006 * 119.99830 * 95.19030 * 16 15 14
18 18 C 1.37873 * 120.00139 * 274.91204 * 16 15 14
19 19 N 1.31516 * 119.99857 * 6.45083 * 18 16 15
20 20 Si 1.86801 * 119.99994 * 186.45025 * 18 16 15
21 21 H 1.48504 * 109.47021 * 90.00382 * 20 18 16
22 22 H 1.48503 * 109.46972 * 209.99716 * 20 18 16
23 23 H 1.48496 * 109.47302 * 330.00139 * 20 18 16
24 24 C 1.53002 * 117.49682 * 80.34758 * 15 14 11
25 25 C 1.53002 * 117.49685 * 149.00783 * 15 14 11
26 26 H 1.09000 * 109.47666 * 59.99747 * 1 2 3
27 27 H 1.09001 * 109.47511 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.47232 * 299.99967 * 1 2 3
29 29 H 1.09005 * 109.46838 * 240.00018 * 2 1 3
30 30 H 1.08995 * 109.47497 * 120.00681 * 2 1 3
31 31 H 1.08994 * 109.47449 * 59.99807 * 3 2 1
32 32 H 1.09002 * 109.47143 * 299.99897 * 3 2 1
33 33 H 1.08992 * 109.47517 * 60.00103 * 4 3 2
34 34 H 1.09002 * 109.46586 * 299.99650 * 4 3 2
35 35 H 1.08993 * 109.47244 * 64.99674 * 7 5 4
36 36 H 1.08999 * 109.47273 * 185.00293 * 7 5 4
37 37 H 1.08998 * 109.47603 * 180.02562 * 9 8 7
38 38 H 1.09003 * 109.47439 * 300.00772 * 9 8 7
39 39 H 1.09004 * 109.47012 * 59.99979 * 9 8 7
40 40 H 0.97003 * 119.99887 * 35.00185 * 10 5 4
41 41 H 1.09004 * 109.46763 * 60.95023 * 14 11 10
42 42 H 1.09003 * 109.47105 * 300.95726 * 14 11 10
43 43 H 0.97005 * 119.99500 * 185.09085 * 19 18 16
44 44 H 1.09000 * 117.49849 * 215.00105 * 24 15 14
45 45 H 1.09004 * 117.49909 * 0.02562 * 24 15 14
46 46 H 1.08995 * 117.50130 * 359.97438 * 25 15 14
47 47 H 1.08996 * 117.49590 * 144.97614 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 -0.0006
5 6 4.0800 2.8849 -0.0013
6 1 3.6451 3.4237 -0.8431
7 6 5.6047 2.8867 -0.1276
8 8 6.1696 2.0831 0.9104
9 6 7.5968 2.0170 0.8828
10 7 3.6929 3.5403 1.2505
11 16 3.2962 5.1481 1.2551
12 8 4.3813 5.7786 0.5885
13 8 3.0071 5.4339 2.6167
14 6 1.7889 5.2454 0.2504
15 6 1.3305 6.7022 0.1583
16 6 0.8891 7.3279 1.4562
17 1 1.5872 7.9093 2.0403
18 6 -0.4074 7.1630 1.8952
19 7 -1.2228 6.3577 1.2500
20 14 -1.0060 8.0835 3.4065
21 1 -1.5747 9.3924 2.9958
22 1 -2.0519 7.2826 4.0919
23 1 0.1327 8.3073 4.3330
24 6 2.0390 7.6029 -0.8554
25 6 0.6052 7.1351 -1.1174
26 1 -0.3634 0.5139 -0.8899
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8932 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8899
31 1 1.6767 1.9563 0.8899
32 1 1.6766 1.9563 -0.8900
33 1 3.9329 0.9288 -0.8908
34 1 3.9336 0.9285 0.8892
35 1 5.8895 2.4798 -1.0977
36 1 5.9755 3.9079 -0.0389
37 1 7.9474 1.3885 1.7013
38 1 7.9225 1.5918 -0.0666
39 1 8.0092 3.0201 0.9921
40 1 3.6689 3.0325 2.0766
41 1 1.0046 4.6462 0.7131
42 1 1.9941 4.8650 -0.7503
43 1 -2.1544 6.2977 1.5136
44 1 2.1859 8.6482 -0.5835
45 1 2.8315 7.1575 -1.4569
46 1 0.4550 6.3823 -1.8912
47 1 -0.1914 7.8724 -1.0179
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451222164.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:07:35
Heat of formation + Delta-G solvation = -141.226119 kcal
Electronic energy + Delta-G solvation = -26750.280447 eV
Core-core repulsion = 23059.536081 eV
Total energy + Delta-G solvation = -3690.744366 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-39.49985 -38.55416 -37.88834 -37.35719 -36.75717 -35.18914 -34.06484 -31.33037
-29.86872 -29.33633 -27.47358 -26.96910 -24.78956 -22.97956 -22.05493 -21.83509
-21.48274 -20.23907 -18.54409 -18.31878 -17.56590 -16.95575 -16.85017 -16.66830
-16.38988 -16.24969 -16.08680 -15.59166 -15.48686 -14.87256 -14.56450 -14.30765
-13.77357 -13.68803 -13.58581 -13.47639 -13.20909 -13.16246 -13.01467 -12.88358
-12.84716 -12.82584 -12.45955 -12.31866 -12.21942 -12.09418 -11.91645 -11.89128
-11.80160 -11.58709 -11.43563 -11.30152 -10.84771 -10.54190 -10.51477 -10.37313
-9.85013 -8.18906 -6.32091 -0.47222 1.37069 1.40266 1.50688 2.04838
2.40928 2.92068 3.00659 3.09422 3.37595 3.48523 3.65648 3.99104
4.06267 4.12469 4.18926 4.32859 4.34473 4.40112 4.50863 4.52588
4.54669 4.58715 4.61618 4.64924 4.79254 4.84878 4.88872 4.93080
4.98166 4.98915 5.01922 5.12815 5.22198 5.23956 5.30895 5.40409
5.48941 5.56387 5.60877 5.61938 5.73320 6.19229 6.23941 6.29503
6.73916 7.40146 8.88625
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012056 B = 0.004910 C = 0.004130
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2321.943350 B = 5701.610882 C = 6778.200333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.117 4.117
3 C -0.132 4.132
4 C -0.107 4.107
5 C 0.147 3.853
6 H 0.105 0.895
7 C 0.039 3.961
8 O -0.400 6.400
9 C 0.024 3.976
10 N -1.106 6.106
11 S 2.619 3.381
12 O -0.993 6.993
13 O -0.998 6.998
14 C -0.547 4.547
15 C 0.008 3.992
16 C -0.528 4.528
17 H 0.045 0.955
18 C 0.043 3.957
19 N -0.890 5.890
20 Si 0.931 3.069
21 H -0.268 1.268
22 H -0.277 1.277
23 H -0.278 1.278
24 C -0.199 4.199
25 C -0.135 4.135
26 H 0.051 0.949
27 H 0.062 0.938
28 H 0.040 0.960
29 H 0.074 0.926
30 H 0.062 0.938
31 H 0.050 0.950
32 H 0.065 0.935
33 H 0.096 0.904
34 H 0.075 0.925
35 H 0.085 0.915
36 H 0.045 0.955
37 H 0.096 0.904
38 H 0.057 0.943
39 H 0.034 0.966
40 H 0.420 0.580
41 H 0.123 0.877
42 H 0.133 0.867
43 H 0.264 0.736
44 H 0.081 0.919
45 H 0.101 0.899
46 H 0.090 0.910
47 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.958 -14.480 -7.060 18.939
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.155 4.155
3 C -0.170 4.170
4 C -0.145 4.145
5 C 0.040 3.960
6 H 0.123 0.877
7 C -0.039 4.039
8 O -0.319 6.319
9 C -0.072 4.072
10 N -0.866 5.866
11 S 2.717 3.283
12 O -0.983 6.983
13 O -0.989 6.989
14 C -0.680 4.680
15 C 0.006 3.994
16 C -0.566 4.566
17 H 0.064 0.936
18 C -0.160 4.160
19 N -0.526 5.526
20 Si 0.756 3.244
21 H -0.193 1.193
22 H -0.202 1.202
23 H -0.203 1.203
24 C -0.236 4.236
25 C -0.174 4.174
26 H 0.070 0.930
27 H 0.081 0.919
28 H 0.060 0.940
29 H 0.093 0.907
30 H 0.081 0.919
31 H 0.069 0.931
32 H 0.084 0.916
33 H 0.114 0.886
34 H 0.094 0.906
35 H 0.103 0.897
36 H 0.064 0.936
37 H 0.114 0.886
38 H 0.076 0.924
39 H 0.053 0.947
40 H 0.255 0.745
41 H 0.141 0.859
42 H 0.151 0.849
43 H 0.073 0.927
44 H 0.099 0.901
45 H 0.119 0.881
46 H 0.108 0.892
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 10.195 -13.931 -6.583 18.475
hybrid contribution -0.952 0.484 0.864 1.374
sum 9.243 -13.446 -5.719 17.290
Atomic orbital electron populations
1.21811 0.96534 1.01725 1.01401 1.21469 0.95291 0.96211 1.02511
1.21745 0.95498 0.97563 1.02160 1.21727 0.94914 0.93570 1.04330
1.21182 0.92846 0.96408 0.85526 0.87679 1.23212 0.93953 0.95022
0.91722 1.87828 1.21083 1.70380 1.52639 1.22905 0.80280 1.01079
1.02981 1.55530 1.84503 1.29677 1.16870 1.04470 0.76442 0.72820
0.74598 1.93457 1.51854 1.75320 1.77658 1.93487 1.86652 1.83339
1.35375 1.29850 1.18559 1.05530 1.14082 1.18422 1.01767 0.88042
0.91159 1.20701 0.97191 1.33422 1.05245 0.93638 1.25454 0.97070
0.94798 0.98652 1.70048 1.05081 1.35229 1.42271 0.85968 0.78156
0.79441 0.80816 1.19296 1.20179 1.20309 1.23276 0.95763 1.00162
1.04375 1.22487 0.93279 1.02461 0.99136 0.92973 0.91918 0.94032
0.90730 0.91924 0.93138 0.91649 0.88589 0.90603 0.89693 0.93644
0.88584 0.92420 0.94726 0.74490 0.85860 0.84859 0.92666 0.90053
0.88064 0.89195 0.91639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.09 9.91 71.98 0.71 -2.38 16
2 C -0.12 -2.09 5.93 30.59 0.18 -1.90 16
3 C -0.13 -2.70 5.10 30.59 0.16 -2.55 16
4 C -0.11 -1.95 4.53 30.59 0.14 -1.81 16
5 C 0.15 3.38 2.47 44.99 0.11 3.49 16
6 H 0.11 2.14 7.13 -2.39 -0.02 2.12 16
7 C 0.04 0.88 5.77 71.98 0.42 1.30 16
8 O -0.40 -9.26 9.87 -148.98 -1.47 -10.73 16
9 C 0.02 0.41 11.01 113.37 1.25 1.66 16
10 N -1.11 -32.70 4.76 -169.39 -0.81 -33.50 16
11 S 2.62 105.05 5.18 -56.49 -0.29 104.76 16
12 O -0.99 -42.04 17.05 -127.65 -2.18 -44.22 16
13 O -1.00 -49.68 17.47 -127.65 -2.23 -51.91 16
14 C -0.55 -21.98 5.82 71.98 0.42 -21.56 16
15 C 0.01 0.40 1.33 -52.93 -0.07 0.33 16
16 C -0.53 -29.41 7.96 25.60 0.20 -29.21 16
17 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16
18 C 0.04 2.37 5.39 84.65 0.46 2.82 16
19 N -0.89 -48.90 12.93 21.45 0.28 -48.63 16
20 Si 0.93 44.45 29.55 68.60 2.03 46.48 16
21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
23 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16
24 C -0.20 -8.35 9.96 30.62 0.30 -8.05 16
25 C -0.13 -5.89 9.44 30.62 0.29 -5.61 16
26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16
30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16
32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.08 1.46 7.73 -2.39 -0.02 1.44 16
35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
36 H 0.05 1.24 7.36 -2.39 -0.02 1.22 16
37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
39 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16
40 H 0.42 11.73 8.80 -96.74 -0.85 10.88 16
41 H 0.12 5.28 8.14 -2.39 -0.02 5.26 16
42 H 0.13 4.19 7.37 -2.39 -0.02 4.17 16
43 H 0.26 13.83 8.32 -92.70 -0.77 13.06 16
44 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16
45 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16
46 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16
47 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16
Total: -1.00 -70.29 395.31 -0.03 -70.32
By element:
Atomic # 1 Polarization: 30.82 SS G_CDS: 0.08 Total: 30.90 kcal
Atomic # 6 Polarization: -68.04 SS G_CDS: 4.57 Total: -63.47 kcal
Atomic # 7 Polarization: -81.60 SS G_CDS: -0.53 Total: -82.13 kcal
Atomic # 8 Polarization: -100.97 SS G_CDS: -5.88 Total: -106.85 kcal
Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal
Atomic # 16 Polarization: 105.05 SS G_CDS: -0.29 Total: 104.76 kcal
Total: -70.29 -0.03 -70.32 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451222164.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.908 kcal
(2) G-P(sol) polarization free energy of solvation -70.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.197 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds