Wall clock time and date at job start Tue Mar 31 2020 12:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46969 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47466 * 55.00128 * 5 4 3 7 7 C 1.53008 * 109.46732 * 174.99905 * 5 4 3 8 8 O 1.42898 * 109.47161 * 54.99904 * 7 5 4 9 9 C 1.42898 * 113.99757 * 179.97438 * 8 7 5 10 10 N 1.46501 * 109.47326 * 294.99510 * 5 4 3 11 11 S 1.65598 * 119.99910 * 144.99888 * 10 5 4 12 12 O 1.42099 * 104.27560 * 181.07104 * 11 10 5 13 13 O 1.42092 * 104.27923 * 308.93234 * 11 10 5 14 14 C 1.81404 * 104.44705 * 65.00427 * 11 10 5 15 15 C 1.53003 * 109.47000 * 172.73024 * 14 11 10 16 16 C 1.50701 * 115.54574 * 65.16791 * 15 14 11 17 17 H 1.07998 * 119.99621 * 264.96500 * 16 15 14 18 18 C 1.37870 * 120.00342 * 84.96727 * 16 15 14 19 19 N 1.31520 * 119.99910 * 352.97865 * 18 16 15 20 20 Si 1.86800 * 120.00164 * 172.97655 * 18 16 15 21 21 H 1.48510 * 109.46976 * 60.00377 * 20 18 16 22 22 H 1.48505 * 109.47037 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47430 * 300.00393 * 20 18 16 24 24 C 1.52994 * 117.50184 * 279.49280 * 15 14 11 25 25 C 1.53000 * 117.50001 * 210.83075 * 15 14 11 26 26 H 1.09002 * 109.47107 * 299.99397 * 1 2 3 27 27 H 1.09001 * 109.47329 * 59.99944 * 1 2 3 28 28 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46709 * 240.00260 * 2 1 3 30 30 H 1.08991 * 109.47252 * 120.00031 * 2 1 3 31 31 H 1.08999 * 109.46876 * 59.99838 * 3 2 1 32 32 H 1.09001 * 109.47096 * 300.00198 * 3 2 1 33 33 H 1.08999 * 109.47560 * 59.99962 * 4 3 2 34 34 H 1.09001 * 109.46998 * 299.99963 * 4 3 2 35 35 H 1.08998 * 109.47325 * 294.99678 * 7 5 4 36 36 H 1.09003 * 109.46835 * 174.99719 * 7 5 4 37 37 H 1.09006 * 109.46944 * 60.00388 * 9 8 7 38 38 H 1.08999 * 109.47081 * 179.97438 * 9 8 7 39 39 H 1.08993 * 109.47400 * 300.00183 * 9 8 7 40 40 H 0.96999 * 119.99413 * 325.00840 * 10 5 4 41 41 H 1.09000 * 109.47100 * 292.73821 * 14 11 10 42 42 H 1.09008 * 109.47291 * 52.73380 * 14 11 10 43 43 H 0.97003 * 119.99635 * 185.05349 * 19 18 16 44 44 H 1.09004 * 117.49710 * 0.02562 * 24 15 14 45 45 H 1.08999 * 117.49972 * 145.01824 * 24 15 14 46 46 H 1.08993 * 117.50091 * 214.98460 * 25 15 14 47 47 H 1.08999 * 117.49508 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 0.8423 7 6 5.6048 2.8868 0.1251 8 8 6.1689 2.0835 -0.9134 9 6 7.5962 2.0183 -0.8874 10 7 3.6919 3.5408 -1.2513 11 16 3.2951 5.1485 -1.2551 12 8 2.9559 5.4225 -2.6076 13 8 2.3317 5.2742 -0.2183 14 6 4.8336 5.9955 -0.8007 15 6 4.6454 7.5070 -0.9450 16 6 3.6455 8.1300 -0.0053 17 1 2.6257 8.2831 -0.3261 18 6 4.0325 8.5047 1.2638 19 7 5.2325 8.1947 1.7037 20 14 2.8524 9.4526 2.3585 21 1 1.6264 8.6446 2.5812 22 1 3.5040 9.7323 3.6634 23 1 2.4885 10.7336 1.7017 24 6 4.7614 8.1025 -2.3495 25 6 5.8725 8.3387 -1.3235 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.8903 2.4797 1.0951 36 1 5.9755 3.9080 0.0364 37 1 7.9232 1.5933 0.0616 38 1 7.9461 1.3898 -1.7064 39 1 8.0078 3.0215 -0.9973 40 1 3.6673 3.0331 -2.0774 41 1 5.0877 5.7578 0.2323 42 1 5.6381 5.6651 -1.4579 43 1 5.4791 8.3931 2.6207 44 1 4.9713 7.4173 -3.1709 45 1 4.1146 8.9451 -2.5939 46 1 5.9564 9.3366 -0.8934 47 1 6.8140 7.8091 -1.4694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451222165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:40 Heat of formation + Delta-G solvation = -119.427014 kcal Electronic energy + Delta-G solvation = -26740.749268 eV Core-core repulsion = 23050.950183 eV Total energy + Delta-G solvation = -3689.799086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.53977 -36.76848 -36.47730 -36.12743 -35.03631 -34.25866 -32.04896 -30.30195 -28.66539 -28.01886 -26.12435 -25.47467 -23.91626 -21.22263 -21.11780 -20.85795 -19.72239 -18.72105 -17.11162 -16.59135 -16.25657 -15.90696 -15.55864 -15.39804 -15.14080 -14.87004 -14.65169 -14.24332 -13.83309 -13.77760 -13.33515 -13.09892 -12.66925 -12.59434 -12.31106 -11.99122 -11.93653 -11.81387 -11.42330 -11.26290 -11.19750 -11.16078 -11.03426 -10.94162 -10.91449 -10.91195 -10.60195 -10.56698 -10.45703 -10.44743 -10.10201 -9.75386 -9.60079 -9.14273 -8.97095 -8.56435 -8.08962 -6.15032 -4.25578 1.12173 3.32067 3.33708 3.40835 3.48650 3.79390 4.36650 4.54157 4.62761 4.91594 4.96881 5.04485 5.14141 5.15645 5.18122 5.21582 5.27830 5.32081 5.37354 5.42013 5.50020 5.59843 5.61987 5.71088 5.79391 5.82917 5.88317 5.93540 6.00922 6.04409 6.17383 6.19653 6.26779 6.36720 6.44960 6.49428 6.60653 6.72862 6.98061 7.13692 7.23259 7.39121 7.40283 7.79238 8.20057 8.79806 9.45647 10.92595 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.004818 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.498651 B = 5810.674248 C = 6659.667498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.113 4.113 5 C 0.153 3.847 6 H 0.107 0.893 7 C 0.033 3.967 8 O -0.382 6.382 9 C 0.029 3.971 10 N -1.119 6.119 11 S 2.606 3.394 12 O -0.974 6.974 13 O -0.951 6.951 14 C -0.556 4.556 15 C 0.044 3.956 16 C -0.515 4.515 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.208 4.208 25 C -0.141 4.141 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.412 0.588 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.263 0.737 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -15.242 -2.148 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.163 4.163 4 C -0.152 4.152 5 C 0.045 3.955 6 H 0.125 0.875 7 C -0.045 4.045 8 O -0.301 6.301 9 C -0.067 4.067 10 N -0.875 5.875 11 S 2.703 3.297 12 O -0.965 6.965 13 O -0.940 6.940 14 C -0.689 4.689 15 C 0.041 3.959 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.245 4.245 25 C -0.180 4.180 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.140 -14.842 -2.155 15.041 hybrid contribution 0.616 0.375 0.763 1.050 sum 1.756 -14.467 -1.392 14.640 Atomic orbital electron populations 1.21789 0.96115 1.01147 1.02105 1.21518 0.95729 0.97135 1.01618 1.21671 0.95101 0.96361 1.03161 1.21714 0.95609 0.94833 1.03049 1.20905 0.91454 0.95740 0.87422 0.87478 1.23362 0.94701 0.95682 0.90778 1.87858 1.19582 1.70565 1.52071 1.22738 0.81583 1.01057 1.01361 1.55937 1.86786 1.29495 1.15316 1.05152 0.77889 0.72422 0.74285 1.93503 1.83329 1.83606 1.36041 1.93537 1.56955 1.84456 1.59085 1.30089 1.18220 1.09791 1.10790 1.18266 0.98816 0.85850 0.92919 1.20491 0.95438 1.41560 0.97765 0.91437 1.24937 0.94897 0.94697 0.97675 1.69972 1.18924 1.46024 1.16209 0.86665 0.81523 0.80740 0.79404 1.19438 1.21126 1.19874 1.23190 1.04361 1.03954 0.93005 1.22538 0.91680 1.01697 1.02088 0.92658 0.92690 0.93142 0.92257 0.92294 0.91500 0.91488 0.90577 0.91134 0.92258 0.91959 0.94298 0.89904 0.93937 0.75494 0.85059 0.88310 0.92719 0.90703 0.89547 0.89595 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.36 16 3 C -0.13 -1.48 5.10 -26.73 -0.14 -1.62 16 4 C -0.11 -1.27 4.53 -26.73 -0.12 -1.39 16 5 C 0.15 2.06 2.60 -67.93 -0.18 1.89 16 6 H 0.11 1.54 7.48 -51.93 -0.39 1.15 16 7 C 0.03 0.42 5.76 37.16 0.21 0.63 16 8 O -0.38 -4.72 9.87 -35.23 -0.35 -5.07 16 9 C 0.03 0.29 11.01 101.05 1.11 1.40 16 10 N -1.12 -16.99 4.76 -4.89 -0.02 -17.02 16 11 S 2.61 52.65 5.16 -107.50 -0.55 52.10 16 12 O -0.97 -21.74 18.08 -57.54 -1.04 -22.78 16 13 O -0.95 -22.30 17.12 -57.54 -0.98 -23.28 16 14 C -0.56 -11.54 4.72 37.16 0.18 -11.36 16 15 C 0.04 1.06 1.33 -155.66 -0.21 0.85 16 16 C -0.52 -14.00 8.23 -34.44 -0.28 -14.28 16 17 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 18 C 0.08 2.23 5.39 -17.82 -0.10 2.14 16 19 N -0.88 -23.67 12.95 55.43 0.72 -22.95 16 20 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.21 -4.60 9.96 -26.70 -0.27 -4.86 16 25 C -0.14 -3.20 9.46 -26.69 -0.25 -3.45 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 33 H 0.08 0.84 7.73 -51.93 -0.40 0.44 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.85 5.94 -51.93 -0.31 0.54 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.41 5.56 8.80 -34.47 -0.30 5.25 16 41 H 0.13 2.77 7.35 -51.92 -0.38 2.39 16 42 H 0.10 1.77 8.06 -51.92 -0.42 1.35 16 43 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 46 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -31.92 394.12 -9.64 -41.56 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.49 Total: 7.89 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 0.17 Total: -32.54 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.69 Total: -39.97 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -2.37 Total: -51.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 52.65 SS G_CDS: -0.55 Total: 52.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.92 -9.64 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.870 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds