Wall clock time and date at job start Tue Mar 31 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46969 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47466 * 55.00128 * 5 4 3 7 7 C 1.53008 * 109.46732 * 174.99905 * 5 4 3 8 8 O 1.42898 * 109.47161 * 54.99904 * 7 5 4 9 9 C 1.42898 * 113.99757 * 179.97438 * 8 7 5 10 10 N 1.46501 * 109.47326 * 294.99510 * 5 4 3 11 11 S 1.65598 * 119.99910 * 144.99888 * 10 5 4 12 12 O 1.42099 * 104.27560 * 181.07104 * 11 10 5 13 13 O 1.42092 * 104.27923 * 308.93234 * 11 10 5 14 14 C 1.81404 * 104.44705 * 65.00427 * 11 10 5 15 15 C 1.53003 * 109.47000 * 172.73024 * 14 11 10 16 16 C 1.50701 * 115.54574 * 65.16791 * 15 14 11 17 17 H 1.07998 * 119.99621 * 264.96500 * 16 15 14 18 18 C 1.37870 * 120.00342 * 84.96727 * 16 15 14 19 19 N 1.31520 * 119.99910 * 352.97865 * 18 16 15 20 20 Si 1.86800 * 120.00164 * 172.97655 * 18 16 15 21 21 H 1.48510 * 109.46976 * 60.00377 * 20 18 16 22 22 H 1.48505 * 109.47037 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47430 * 300.00393 * 20 18 16 24 24 C 1.52994 * 117.50184 * 279.49280 * 15 14 11 25 25 C 1.53000 * 117.50001 * 210.83075 * 15 14 11 26 26 H 1.09002 * 109.47107 * 299.99397 * 1 2 3 27 27 H 1.09001 * 109.47329 * 59.99944 * 1 2 3 28 28 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46709 * 240.00260 * 2 1 3 30 30 H 1.08991 * 109.47252 * 120.00031 * 2 1 3 31 31 H 1.08999 * 109.46876 * 59.99838 * 3 2 1 32 32 H 1.09001 * 109.47096 * 300.00198 * 3 2 1 33 33 H 1.08999 * 109.47560 * 59.99962 * 4 3 2 34 34 H 1.09001 * 109.46998 * 299.99963 * 4 3 2 35 35 H 1.08998 * 109.47325 * 294.99678 * 7 5 4 36 36 H 1.09003 * 109.46835 * 174.99719 * 7 5 4 37 37 H 1.09006 * 109.46944 * 60.00388 * 9 8 7 38 38 H 1.08999 * 109.47081 * 179.97438 * 9 8 7 39 39 H 1.08993 * 109.47400 * 300.00183 * 9 8 7 40 40 H 0.96999 * 119.99413 * 325.00840 * 10 5 4 41 41 H 1.09000 * 109.47100 * 292.73821 * 14 11 10 42 42 H 1.09008 * 109.47291 * 52.73380 * 14 11 10 43 43 H 0.97003 * 119.99635 * 185.05349 * 19 18 16 44 44 H 1.09004 * 117.49710 * 0.02562 * 24 15 14 45 45 H 1.08999 * 117.49972 * 145.01824 * 24 15 14 46 46 H 1.08993 * 117.50091 * 214.98460 * 25 15 14 47 47 H 1.08999 * 117.49508 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 0.8423 7 6 5.6048 2.8868 0.1251 8 8 6.1689 2.0835 -0.9134 9 6 7.5962 2.0183 -0.8874 10 7 3.6919 3.5408 -1.2513 11 16 3.2951 5.1485 -1.2551 12 8 2.9559 5.4225 -2.6076 13 8 2.3317 5.2742 -0.2183 14 6 4.8336 5.9955 -0.8007 15 6 4.6454 7.5070 -0.9450 16 6 3.6455 8.1300 -0.0053 17 1 2.6257 8.2831 -0.3261 18 6 4.0325 8.5047 1.2638 19 7 5.2325 8.1947 1.7037 20 14 2.8524 9.4526 2.3585 21 1 1.6264 8.6446 2.5812 22 1 3.5040 9.7323 3.6634 23 1 2.4885 10.7336 1.7017 24 6 4.7614 8.1025 -2.3495 25 6 5.8725 8.3387 -1.3235 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.8903 2.4797 1.0951 36 1 5.9755 3.9080 0.0364 37 1 7.9232 1.5933 0.0616 38 1 7.9461 1.3898 -1.7064 39 1 8.0078 3.0215 -0.9973 40 1 3.6673 3.0331 -2.0774 41 1 5.0877 5.7578 0.2323 42 1 5.6381 5.6651 -1.4579 43 1 5.4791 8.3931 2.6207 44 1 4.9713 7.4173 -3.1709 45 1 4.1146 8.9451 -2.5939 46 1 5.9564 9.3366 -0.8934 47 1 6.8140 7.8091 -1.4694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451222165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:39 Heat of formation + Delta-G solvation = -140.744543 kcal Electronic energy + Delta-G solvation = -26741.673666 eV Core-core repulsion = 23050.950183 eV Total energy + Delta-G solvation = -3690.723483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.52743 -38.57898 -37.93227 -37.34446 -36.75661 -35.24407 -34.08130 -31.36191 -30.03571 -29.24943 -27.49606 -26.94942 -24.81730 -23.00211 -22.09201 -21.81361 -21.50237 -20.30956 -18.58821 -18.35074 -17.52427 -16.98332 -16.79500 -16.68559 -16.56186 -16.27332 -16.08578 -15.71036 -15.36595 -14.92338 -14.57800 -14.29129 -13.77504 -13.74217 -13.56630 -13.53140 -13.21190 -13.12854 -13.07370 -12.89602 -12.85121 -12.83288 -12.43954 -12.38209 -12.21696 -12.13773 -11.93565 -11.89926 -11.81633 -11.56292 -11.49405 -11.34345 -10.89161 -10.58151 -10.49627 -10.40692 -9.87189 -8.19128 -6.33836 -0.48943 1.39801 1.41298 1.48631 2.04388 2.40045 2.89442 2.95117 3.08130 3.37793 3.46464 3.63353 3.93563 4.00573 4.10838 4.23997 4.31866 4.33456 4.35958 4.44233 4.52914 4.55237 4.58592 4.59850 4.64979 4.70614 4.82637 4.88732 4.92631 4.94608 4.96946 4.98721 5.10814 5.19144 5.20431 5.27497 5.36975 5.45924 5.51797 5.58142 5.58574 5.71430 6.21388 6.23216 6.26588 6.71676 7.38394 8.87730 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.004818 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.498651 B = 5810.674248 C = 6659.667498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.104 4.104 5 C 0.144 3.856 6 H 0.094 0.906 7 C 0.035 3.965 8 O -0.392 6.392 9 C 0.022 3.978 10 N -1.102 6.102 11 S 2.621 3.379 12 O -0.998 6.998 13 O -0.990 6.990 14 C -0.550 4.550 15 C 0.012 3.988 16 C -0.536 4.536 17 H 0.047 0.953 18 C 0.046 3.954 19 N -0.890 5.890 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.199 4.199 25 C -0.136 4.136 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.038 0.962 40 H 0.422 0.578 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.266 0.734 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -17.017 -2.172 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.143 4.143 5 C 0.037 3.963 6 H 0.112 0.888 7 C -0.044 4.044 8 O -0.311 6.311 9 C -0.074 4.074 10 N -0.862 5.862 11 S 2.718 3.282 12 O -0.989 6.989 13 O -0.980 6.980 14 C -0.683 4.683 15 C 0.010 3.990 16 C -0.573 4.573 17 H 0.065 0.935 18 C -0.157 4.157 19 N -0.526 5.526 20 Si 0.758 3.242 21 H -0.203 1.203 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.236 4.236 25 C -0.175 4.175 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.258 0.742 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.269 -16.610 -2.190 16.907 hybrid contribution 0.287 0.883 0.746 1.191 sum 2.556 -15.727 -1.444 15.999 Atomic orbital electron populations 1.21817 0.96204 1.01960 1.01451 1.21493 0.95674 0.95717 1.02666 1.21692 0.95744 0.97566 1.01651 1.21680 0.94910 0.93242 1.04420 1.21136 0.92565 0.96769 0.85868 0.88828 1.23281 0.93659 0.95381 0.92044 1.87833 1.21024 1.70289 1.51997 1.22927 0.80221 1.01345 1.02892 1.55447 1.86555 1.27518 1.16693 1.04410 0.77440 0.73355 0.73028 1.93457 1.83835 1.84659 1.36934 1.93486 1.58661 1.85584 1.60227 1.29966 1.19392 1.07719 1.11200 1.18404 0.99176 0.87705 0.93681 1.20650 0.95333 1.42418 0.98904 0.93502 1.25470 0.96254 0.95368 0.98612 1.70009 1.19574 1.46468 1.16529 0.85999 0.79792 0.79714 0.78685 1.20288 1.19714 1.19433 1.23236 1.03666 1.03889 0.92829 1.22490 0.92373 1.00728 1.01899 0.93243 0.93487 0.91585 0.91340 0.91010 0.92895 0.93235 0.89776 0.88998 0.90142 0.93259 0.92932 0.88243 0.94369 0.74189 0.85658 0.85361 0.92476 0.88551 0.90008 0.91480 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.12 -2.11 5.93 30.59 0.18 -1.93 16 3 C -0.13 -2.94 5.10 30.59 0.16 -2.78 16 4 C -0.10 -2.12 4.53 30.59 0.14 -1.99 16 5 C 0.14 3.72 2.60 44.99 0.12 3.84 16 6 H 0.09 2.69 7.48 -2.39 -0.02 2.67 16 7 C 0.03 0.81 5.76 71.98 0.41 1.22 16 8 O -0.39 -8.67 9.87 -148.98 -1.47 -10.14 16 9 C 0.02 0.38 11.01 113.37 1.25 1.63 16 10 N -1.10 -32.61 4.76 -169.37 -0.81 -33.42 16 11 S 2.62 106.16 5.16 -56.49 -0.29 105.87 16 12 O -1.00 -44.43 18.08 -127.65 -2.31 -46.74 16 13 O -0.99 -47.65 17.12 -127.65 -2.18 -49.83 16 14 C -0.55 -22.49 4.72 71.98 0.34 -22.15 16 15 C 0.01 0.60 1.33 -52.93 -0.07 0.53 16 16 C -0.54 -29.58 8.23 25.60 0.21 -29.37 16 17 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 18 C 0.05 2.50 5.39 84.65 0.46 2.96 16 19 N -0.89 -48.04 12.95 21.45 0.28 -47.76 16 20 Si 0.93 43.62 29.55 68.60 2.03 45.65 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 C -0.20 -8.65 9.96 30.62 0.30 -8.34 16 25 C -0.14 -6.07 9.46 30.62 0.29 -5.78 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.28 7.75 -2.39 -0.02 1.26 16 33 H 0.08 1.63 7.73 -2.39 -0.02 1.61 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.27 5.94 -2.39 -0.01 1.26 16 37 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.42 10.88 8.80 -96.74 -0.85 10.03 16 41 H 0.13 5.28 7.35 -2.39 -0.02 5.26 16 42 H 0.13 4.36 8.06 -2.39 -0.02 4.34 16 43 H 0.27 13.66 8.32 -92.71 -0.77 12.89 16 44 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 45 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 46 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -68.07 394.12 -0.18 -68.24 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.08 Total: 32.44 kcal Atomic # 6 Polarization: -68.80 SS G_CDS: 4.50 Total: -64.30 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -0.53 Total: -81.18 kcal Atomic # 8 Polarization: -100.76 SS G_CDS: -5.96 Total: -106.72 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 106.16 SS G_CDS: -0.29 Total: 105.87 kcal Total: -68.07 -0.18 -68.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.501 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds