Wall clock time and date at job start Tue Mar 31 2020 13:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47300 * 2 1 4 4 C 1.53005 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.08990 * 109.47571 * 305.00069 * 4 3 2 6 6 C 1.53006 * 109.46931 * 65.00378 * 4 3 2 7 7 C 1.52995 * 109.47259 * 56.62296 * 6 4 3 8 8 O 1.42896 * 109.47297 * 178.85476 * 7 6 4 9 9 C 1.52999 * 109.46823 * 184.99908 * 4 3 2 10 10 N 1.46504 * 109.46791 * 176.62328 * 9 4 3 11 11 S 1.65606 * 119.99726 * 163.48446 * 10 9 4 12 12 O 1.42100 * 104.27192 * 181.07302 * 11 10 9 13 13 O 1.42099 * 104.27698 * 308.92405 * 11 10 9 14 14 C 1.81393 * 104.45121 * 65.00059 * 11 10 9 15 15 C 1.53002 * 109.47069 * 180.08638 * 14 11 10 16 16 C 1.50704 * 115.54946 * 63.72848 * 15 14 11 17 17 H 1.08001 * 119.99611 * 264.76847 * 16 15 14 18 18 C 1.37876 * 120.00210 * 84.76487 * 16 15 14 19 19 N 1.31517 * 119.99825 * 2.13251 * 18 16 15 20 20 Si 1.86792 * 120.00337 * 182.12942 * 18 16 15 21 21 H 1.48501 * 109.47245 * 90.00344 * 20 18 16 22 22 H 1.48500 * 109.47633 * 210.00216 * 20 18 16 23 23 H 1.48501 * 109.47172 * 330.00502 * 20 18 16 24 24 C 1.52994 * 117.49910 * 278.05692 * 15 14 11 25 25 C 1.52991 * 117.50039 * 209.39557 * 15 14 11 26 26 H 1.09004 * 109.47095 * 59.99731 * 1 2 3 27 27 H 1.08994 * 109.47435 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46838 * 299.99940 * 1 2 3 29 29 H 1.09003 * 109.47122 * 240.00204 * 2 1 3 30 30 H 1.09004 * 109.47095 * 120.00269 * 2 1 3 31 31 H 1.08995 * 109.47127 * 60.00237 * 3 2 1 32 32 H 1.08996 * 109.47059 * 300.00020 * 3 2 1 33 33 H 1.09000 * 109.47022 * 296.61989 * 6 4 3 34 34 H 1.08995 * 109.46648 * 176.62204 * 6 4 3 35 35 H 1.09001 * 109.47482 * 58.85496 * 7 6 4 36 36 H 1.09000 * 109.47239 * 298.85692 * 7 6 4 37 37 H 0.96697 * 114.00365 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47501 * 296.62253 * 9 4 3 39 39 H 1.08997 * 109.47197 * 56.62942 * 9 4 3 40 40 H 0.97000 * 120.00018 * 343.48313 * 10 9 4 41 41 H 1.08994 * 109.47113 * 300.08628 * 14 11 10 42 42 H 1.09003 * 109.47195 * 60.08423 * 14 11 10 43 43 H 0.97000 * 120.00300 * 185.01871 * 19 18 16 44 44 H 1.09001 * 117.49968 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49950 * 145.01932 * 24 15 14 46 46 H 1.09002 * 117.50434 * 214.98421 * 25 15 14 47 47 H 1.09007 * 117.49832 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0806 0.8326 -1.3065 7 6 3.5029 1.6092 -2.4914 8 8 4.0008 1.0564 -3.7115 9 6 4.0800 2.8794 0.1263 10 7 5.5428 2.8730 0.2081 11 16 6.3931 4.2688 -0.0592 12 8 7.7536 3.8815 0.0761 13 8 5.8892 4.7547 -1.2958 14 6 5.9045 5.3640 1.3017 15 6 6.6305 6.7038 1.1639 16 6 6.2918 7.5028 -0.0683 17 1 6.9143 7.4288 -0.9477 18 6 5.1874 8.3281 -0.0727 19 7 4.4534 8.4503 1.0117 20 14 4.7335 9.2727 -1.6189 21 1 3.8147 8.4523 -2.4485 22 1 4.0610 10.5425 -1.2439 23 1 5.9639 9.5743 -2.3939 24 6 8.0658 6.7867 1.6872 25 6 6.9322 7.4792 2.4477 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9562 -0.8899 33 1 3.7675 -0.2097 -1.3678 34 1 5.1689 0.8871 -1.3321 35 1 3.7992 2.6557 -2.4191 36 1 2.4154 1.5377 -2.4772 37 1 3.6755 1.5009 -4.5062 38 1 3.7674 3.4535 -0.7458 39 1 3.6678 3.3337 1.0273 40 1 6.0132 2.0513 0.4187 41 1 4.8277 5.5290 1.2667 42 1 6.1707 4.9027 2.2528 43 1 3.6364 8.9727 0.9882 44 1 8.4930 5.8866 2.1293 45 1 8.7651 7.4194 1.1405 46 1 6.8861 8.5673 2.4013 47 1 6.6131 7.0351 3.3907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451286453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:42 Heat of formation + Delta-G solvation = -126.792394 kcal Electronic energy + Delta-G solvation = -26388.876028 eV Core-core repulsion = 22698.757556 eV Total energy + Delta-G solvation = -3690.118473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.72446 -36.74470 -36.29741 -36.16337 -35.08136 -34.48326 -32.02898 -31.82031 -28.29582 -28.17583 -25.73659 -25.43132 -23.94949 -21.75823 -21.19391 -19.78045 -19.35594 -18.60933 -17.65390 -16.86709 -16.50100 -15.88238 -15.76592 -15.35949 -14.93499 -14.71925 -14.49027 -14.24437 -13.90668 -13.68498 -13.44639 -13.39841 -13.07927 -12.51625 -12.08779 -12.00622 -11.95831 -11.82181 -11.69565 -11.46920 -11.30542 -11.22624 -11.12893 -11.00744 -10.91130 -10.70581 -10.57266 -10.55311 -10.45713 -10.38660 -10.10724 -9.82610 -9.65816 -9.14860 -9.04657 -8.53135 -8.07629 -6.13404 -4.24060 1.08162 3.31218 3.36257 3.42510 3.47007 4.16765 4.38265 4.46809 4.62088 4.64252 4.73386 4.91829 5.01359 5.07026 5.14245 5.17681 5.22403 5.31299 5.42116 5.45836 5.50741 5.53107 5.56225 5.64061 5.72475 5.80797 5.85131 5.90595 5.95168 6.03999 6.10205 6.16961 6.19684 6.25014 6.31571 6.36868 6.61419 6.72242 6.99384 7.20948 7.29850 7.44244 7.62251 7.80697 8.20385 8.82172 9.47163 10.94331 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.004119 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.692588 B = 6796.233730 C = 7192.849017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.090 4.090 5 H 0.083 0.917 6 C -0.115 4.115 7 C 0.065 3.935 8 O -0.577 6.577 9 C 0.115 3.885 10 N -1.132 6.132 11 S 2.607 3.393 12 O -0.977 6.977 13 O -0.946 6.946 14 C -0.556 4.556 15 C 0.039 3.961 16 C -0.509 4.509 17 H 0.069 0.931 18 C 0.080 3.920 19 N -0.877 5.877 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.270 1.270 24 C -0.212 4.212 25 C -0.134 4.134 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.378 0.622 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.409 0.591 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.262 0.738 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 -15.000 0.128 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.110 4.110 5 H 0.101 0.899 6 C -0.153 4.153 7 C -0.013 4.013 8 O -0.383 6.383 9 C -0.012 4.012 10 N -0.889 5.889 11 S 2.704 3.296 12 O -0.968 6.968 13 O -0.936 6.936 14 C -0.689 4.689 15 C 0.037 3.963 16 C -0.546 4.546 17 H 0.087 0.913 18 C -0.124 4.124 19 N -0.513 5.513 20 Si 0.718 3.282 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.194 1.194 24 C -0.250 4.250 25 C -0.174 4.174 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.395 -14.955 -0.151 16.266 hybrid contribution -0.959 0.674 -0.290 1.207 sum -7.353 -14.281 -0.442 16.069 Atomic orbital electron populations 1.21777 0.95978 1.01422 1.01871 1.21564 0.95709 0.96780 1.02196 1.21737 0.94047 0.97289 1.02963 1.21349 0.95759 0.95857 0.98011 0.89859 1.21510 1.01802 0.99546 0.92424 1.22439 0.96879 0.97639 0.84302 1.86420 1.74359 1.61418 1.16074 1.21398 0.79829 0.97604 1.02334 1.55948 1.15385 1.27590 1.89935 1.05109 0.73534 0.73504 0.77423 1.93506 1.33587 1.81640 1.88049 1.93534 1.80276 1.79738 1.40047 1.29981 1.11826 1.11538 1.15507 1.18302 0.91164 0.90546 0.96311 1.20547 1.12178 1.24851 0.97000 0.91325 1.24937 0.96115 0.95416 0.95948 1.70015 1.14203 1.40309 1.26760 0.86582 0.79160 0.79035 0.83395 1.20053 1.21251 1.19448 1.23222 0.92860 1.02449 1.06446 1.22514 1.00988 0.99355 0.94498 0.92787 0.92957 0.92710 0.91701 0.92015 0.91250 0.91174 0.91169 0.90801 0.92316 0.93525 0.77511 0.89973 0.91660 0.75861 0.85297 0.88184 0.92854 0.90765 0.89544 0.89294 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.12 -1.06 4.39 -26.73 -0.12 -1.18 16 4 C -0.09 -0.89 2.21 -90.61 -0.20 -1.09 16 5 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.12 -1.28 4.94 -26.73 -0.13 -1.42 16 7 C 0.06 0.77 6.33 37.16 0.24 1.01 16 8 O -0.58 -7.29 13.66 -35.23 -0.48 -7.77 16 9 C 0.11 1.46 5.36 -4.04 -0.02 1.44 16 10 N -1.13 -16.38 5.31 -10.61 -0.06 -16.44 16 11 S 2.61 51.91 5.25 -107.50 -0.56 51.35 16 12 O -0.98 -21.46 18.08 -57.54 -1.04 -22.50 16 13 O -0.95 -22.14 16.75 -57.54 -0.96 -23.11 16 14 C -0.56 -11.42 5.93 37.16 0.22 -11.20 16 15 C 0.04 0.95 1.41 -155.66 -0.22 0.73 16 16 C -0.51 -13.83 7.82 -34.44 -0.27 -14.10 16 17 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 18 C 0.08 2.17 5.43 -17.82 -0.10 2.07 16 19 N -0.88 -23.84 12.72 55.43 0.70 -23.14 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.21 -4.70 9.96 -26.70 -0.27 -4.96 16 25 C -0.13 -3.08 9.23 -26.70 -0.25 -3.32 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.52 6.64 -51.93 -0.34 0.18 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.62 6.12 -51.93 -0.32 0.31 16 33 H 0.07 0.71 6.73 -51.93 -0.35 0.36 16 34 H 0.07 0.92 7.37 -51.93 -0.38 0.54 16 35 H 0.06 0.81 6.39 -51.93 -0.33 0.48 16 36 H 0.05 0.47 6.32 -51.93 -0.33 0.14 16 37 H 0.38 3.22 9.12 45.56 0.42 3.63 16 38 H 0.08 1.16 5.86 -51.93 -0.30 0.86 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.41 4.99 8.30 -34.48 -0.29 4.71 16 41 H 0.13 2.68 8.14 -51.93 -0.42 2.25 16 42 H 0.10 1.75 8.10 -51.92 -0.42 1.33 16 43 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 46 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 47 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -33.47 386.02 -9.77 -43.24 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.27 Total: 10.12 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: -0.90 Total: -33.89 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.65 Total: -39.58 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -2.49 Total: -53.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 51.91 SS G_CDS: -0.56 Total: 51.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.47 -9.77 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451286453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.553 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds