Wall clock time and date at job start Tue Mar 31 2020 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47300 * 2 1 4 4 C 1.53005 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.08990 * 109.47571 * 305.00069 * 4 3 2 6 6 C 1.53006 * 109.46931 * 65.00378 * 4 3 2 7 7 C 1.52995 * 109.47259 * 56.62296 * 6 4 3 8 8 O 1.42896 * 109.47297 * 178.85476 * 7 6 4 9 9 C 1.52999 * 109.46823 * 184.99908 * 4 3 2 10 10 N 1.46504 * 109.46791 * 176.62328 * 9 4 3 11 11 S 1.65606 * 119.99726 * 163.48446 * 10 9 4 12 12 O 1.42100 * 104.27192 * 181.07302 * 11 10 9 13 13 O 1.42099 * 104.27698 * 308.92405 * 11 10 9 14 14 C 1.81393 * 104.45121 * 65.00059 * 11 10 9 15 15 C 1.53002 * 109.47069 * 180.08638 * 14 11 10 16 16 C 1.50704 * 115.54946 * 63.72848 * 15 14 11 17 17 H 1.08001 * 119.99611 * 264.76847 * 16 15 14 18 18 C 1.37876 * 120.00210 * 84.76487 * 16 15 14 19 19 N 1.31517 * 119.99825 * 2.13251 * 18 16 15 20 20 Si 1.86792 * 120.00337 * 182.12942 * 18 16 15 21 21 H 1.48501 * 109.47245 * 90.00344 * 20 18 16 22 22 H 1.48500 * 109.47633 * 210.00216 * 20 18 16 23 23 H 1.48501 * 109.47172 * 330.00502 * 20 18 16 24 24 C 1.52994 * 117.49910 * 278.05692 * 15 14 11 25 25 C 1.52991 * 117.50039 * 209.39557 * 15 14 11 26 26 H 1.09004 * 109.47095 * 59.99731 * 1 2 3 27 27 H 1.08994 * 109.47435 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46838 * 299.99940 * 1 2 3 29 29 H 1.09003 * 109.47122 * 240.00204 * 2 1 3 30 30 H 1.09004 * 109.47095 * 120.00269 * 2 1 3 31 31 H 1.08995 * 109.47127 * 60.00237 * 3 2 1 32 32 H 1.08996 * 109.47059 * 300.00020 * 3 2 1 33 33 H 1.09000 * 109.47022 * 296.61989 * 6 4 3 34 34 H 1.08995 * 109.46648 * 176.62204 * 6 4 3 35 35 H 1.09001 * 109.47482 * 58.85496 * 7 6 4 36 36 H 1.09000 * 109.47239 * 298.85692 * 7 6 4 37 37 H 0.96697 * 114.00365 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47501 * 296.62253 * 9 4 3 39 39 H 1.08997 * 109.47197 * 56.62942 * 9 4 3 40 40 H 0.97000 * 120.00018 * 343.48313 * 10 9 4 41 41 H 1.08994 * 109.47113 * 300.08628 * 14 11 10 42 42 H 1.09003 * 109.47195 * 60.08423 * 14 11 10 43 43 H 0.97000 * 120.00300 * 185.01871 * 19 18 16 44 44 H 1.09001 * 117.49968 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49950 * 145.01932 * 24 15 14 46 46 H 1.09002 * 117.50434 * 214.98421 * 25 15 14 47 47 H 1.09007 * 117.49832 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0806 0.8326 -1.3065 7 6 3.5029 1.6092 -2.4914 8 8 4.0008 1.0564 -3.7115 9 6 4.0800 2.8794 0.1263 10 7 5.5428 2.8730 0.2081 11 16 6.3931 4.2688 -0.0592 12 8 7.7536 3.8815 0.0761 13 8 5.8892 4.7547 -1.2958 14 6 5.9045 5.3640 1.3017 15 6 6.6305 6.7038 1.1639 16 6 6.2918 7.5028 -0.0683 17 1 6.9143 7.4288 -0.9477 18 6 5.1874 8.3281 -0.0727 19 7 4.4534 8.4503 1.0117 20 14 4.7335 9.2727 -1.6189 21 1 3.8147 8.4523 -2.4485 22 1 4.0610 10.5425 -1.2439 23 1 5.9639 9.5743 -2.3939 24 6 8.0658 6.7867 1.6872 25 6 6.9322 7.4792 2.4477 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9562 -0.8899 33 1 3.7675 -0.2097 -1.3678 34 1 5.1689 0.8871 -1.3321 35 1 3.7992 2.6557 -2.4191 36 1 2.4154 1.5377 -2.4772 37 1 3.6755 1.5009 -4.5062 38 1 3.7674 3.4535 -0.7458 39 1 3.6678 3.3337 1.0273 40 1 6.0132 2.0513 0.4187 41 1 4.8277 5.5290 1.2667 42 1 6.1707 4.9027 2.2528 43 1 3.6364 8.9727 0.9882 44 1 8.4930 5.8866 2.1293 45 1 8.7651 7.4194 1.1405 46 1 6.8861 8.5673 2.4013 47 1 6.6131 7.0351 3.3907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451286453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:41 Heat of formation + Delta-G solvation = -151.672940 kcal Electronic energy + Delta-G solvation = -26389.954930 eV Core-core repulsion = 22698.757556 eV Total energy + Delta-G solvation = -3691.197374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.60419 -38.55881 -37.92783 -37.16412 -36.76304 -35.42252 -34.06474 -32.69453 -29.87251 -29.13417 -27.47810 -26.57674 -24.86071 -22.98127 -22.44284 -21.51901 -20.40779 -20.03871 -18.65615 -18.33330 -18.27841 -17.21530 -16.84726 -16.68439 -16.54955 -16.14250 -15.85078 -15.48978 -15.12675 -14.90521 -14.69321 -14.38423 -14.12744 -13.78745 -13.67180 -13.29391 -13.11199 -13.09604 -12.94238 -12.89910 -12.84627 -12.80586 -12.60404 -12.42788 -12.30725 -12.21381 -11.95070 -11.87757 -11.51193 -11.43846 -11.34734 -11.21505 -10.98421 -10.74641 -10.49785 -10.39942 -9.84753 -8.18237 -6.32625 -0.49445 1.38294 1.41009 1.49520 2.06455 2.40676 2.95436 3.09453 3.32629 3.38139 3.48414 3.72449 3.83973 3.94890 4.04042 4.23670 4.30055 4.34180 4.37932 4.45439 4.50851 4.53525 4.59072 4.62007 4.72195 4.76239 4.78638 4.84759 4.96332 4.97324 5.04863 5.12575 5.19606 5.21565 5.22860 5.27817 5.41732 5.45135 5.49058 5.58253 5.61654 5.72538 6.20132 6.23510 6.73452 6.84615 7.39568 8.89011 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.004119 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.692588 B = 6796.233730 C = 7192.849017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.121 4.121 4 C -0.079 4.079 5 H 0.104 0.896 6 C -0.116 4.116 7 C 0.062 3.938 8 O -0.595 6.595 9 C 0.104 3.896 10 N -1.113 6.113 11 S 2.623 3.377 12 O -1.001 7.001 13 O -0.989 6.989 14 C -0.553 4.553 15 C 0.008 3.992 16 C -0.527 4.527 17 H 0.047 0.953 18 C 0.045 3.955 19 N -0.892 5.892 20 Si 0.932 3.068 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.273 1.273 24 C -0.203 4.203 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.393 0.607 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.422 0.578 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.265 0.735 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -16.569 1.214 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.099 4.099 5 H 0.122 0.878 6 C -0.154 4.154 7 C -0.016 4.016 8 O -0.403 6.403 9 C -0.022 4.022 10 N -0.874 5.874 11 S 2.720 3.280 12 O -0.991 6.991 13 O -0.978 6.978 14 C -0.686 4.686 15 C 0.006 3.994 16 C -0.564 4.564 17 H 0.065 0.935 18 C -0.158 4.158 19 N -0.529 5.529 20 Si 0.757 3.243 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.240 4.240 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.242 0.758 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.258 0.742 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.344 -16.518 0.929 18.101 hybrid contribution -0.661 1.132 -0.649 1.463 sum -8.005 -15.385 0.281 17.346 Atomic orbital electron populations 1.21782 0.95653 1.01852 1.01832 1.21535 0.95961 0.95906 1.02497 1.21739 0.92872 0.98172 1.03127 1.21320 0.96592 0.93892 0.98068 0.87765 1.21551 1.00773 1.00370 0.92698 1.22500 0.98141 0.96364 0.84553 1.86378 1.74972 1.61952 1.17039 1.21676 0.78389 0.99687 1.02440 1.55407 1.16176 1.26297 1.89539 1.04336 0.73026 0.74017 0.76653 1.93463 1.35320 1.82128 1.88191 1.93483 1.80884 1.81083 1.42377 1.29873 1.11081 1.10128 1.17485 1.18440 0.93062 0.92155 0.95763 1.20694 1.12233 1.25852 0.97667 0.93520 1.25441 0.96213 0.96102 0.98032 1.70047 1.14450 1.40854 1.27540 0.85955 0.78743 0.78567 0.81015 1.20036 1.19926 1.19824 1.23274 0.92069 1.03061 1.05626 1.22455 1.01374 0.98170 0.95027 0.93065 0.92326 0.92555 0.91922 0.91181 0.90562 0.91656 0.89741 0.92431 0.94781 0.91496 0.75789 0.91760 0.89976 0.74183 0.85690 0.84756 0.92581 0.88353 0.90107 0.91503 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.55 5.69 30.59 0.17 -1.38 16 3 C -0.12 -1.82 4.39 30.59 0.13 -1.68 16 4 C -0.08 -1.38 2.21 -10.79 -0.02 -1.41 16 5 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 6 C -0.12 -2.42 4.94 30.59 0.15 -2.27 16 7 C 0.06 1.44 6.33 71.98 0.46 1.89 16 8 O -0.60 -14.73 13.66 -148.98 -2.03 -16.77 16 9 C 0.10 2.49 5.36 86.38 0.46 2.96 16 10 N -1.11 -30.71 5.31 -187.49 -1.00 -31.70 16 11 S 2.62 103.33 5.25 -56.49 -0.30 103.04 16 12 O -1.00 -43.27 18.08 -127.65 -2.31 -45.57 16 13 O -0.99 -47.25 16.75 -127.65 -2.14 -49.39 16 14 C -0.55 -22.02 5.93 71.98 0.43 -21.60 16 15 C 0.01 0.38 1.41 -52.93 -0.07 0.31 16 16 C -0.53 -29.09 7.82 25.60 0.20 -28.89 16 17 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 18 C 0.04 2.43 5.43 84.65 0.46 2.89 16 19 N -0.89 -48.40 12.72 21.45 0.27 -48.13 16 20 Si 0.93 43.94 29.54 68.60 2.03 45.97 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 24 C -0.20 -8.77 9.96 30.62 0.30 -8.46 16 25 C -0.13 -5.88 9.23 30.61 0.28 -5.60 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.84 6.64 -2.39 -0.02 0.82 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.05 6.12 -2.39 -0.01 1.03 16 33 H 0.08 1.52 6.73 -2.39 -0.02 1.51 16 34 H 0.06 1.38 7.37 -2.39 -0.02 1.36 16 35 H 0.03 0.96 6.39 -2.39 -0.02 0.94 16 36 H 0.07 1.26 6.32 -2.39 -0.02 1.25 16 37 H 0.39 6.56 9.12 -74.06 -0.68 5.88 16 38 H 0.06 1.81 5.86 -2.39 -0.01 1.80 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.42 9.50 8.30 -96.74 -0.80 8.70 16 41 H 0.12 5.07 8.14 -2.39 -0.02 5.05 16 42 H 0.13 4.31 8.10 -2.39 -0.02 4.29 16 43 H 0.26 13.64 8.32 -92.71 -0.77 12.87 16 44 H 0.10 3.73 8.14 -2.39 -0.02 3.72 16 45 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 46 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 Total: -1.00 -71.65 386.02 -2.32 -73.97 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.51 Total: 32.98 kcal Atomic # 6 Polarization: -68.07 SS G_CDS: 3.67 Total: -64.40 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -0.72 Total: -79.83 kcal Atomic # 8 Polarization: -105.25 SS G_CDS: -6.48 Total: -111.73 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 103.33 SS G_CDS: -0.30 Total: 103.04 kcal Total: -71.65 -2.32 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451286453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.700 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds