Wall clock time and date at job start Tue Mar 31 2020 13:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.53004 * 109.46760 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46737 * 179.97438 * 4 3 2 6 6 C 1.46493 * 119.99803 * 274.99984 * 5 4 3 7 7 C 1.52998 * 109.47439 * 274.99681 * 6 5 4 8 8 C 1.52997 * 109.47427 * 180.02562 * 7 6 5 9 9 O 1.42897 * 109.47295 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99822 * 94.99808 * 5 4 3 11 11 O 1.42102 * 104.27465 * 153.93021 * 10 5 4 12 12 O 1.42107 * 104.27799 * 26.07404 * 10 5 4 13 13 C 1.81400 * 104.45201 * 269.99971 * 10 5 4 14 14 C 1.53000 * 109.47141 * 187.48878 * 13 10 5 15 15 C 1.50702 * 115.54985 * 294.94615 * 14 13 10 16 16 H 1.08001 * 119.99462 * 95.18036 * 15 14 13 17 17 C 1.37874 * 120.00006 * 274.91190 * 15 14 13 18 18 N 1.31509 * 120.00245 * 6.38451 * 17 15 14 19 19 Si 1.86808 * 119.99769 * 186.39554 * 17 15 14 20 20 H 1.48496 * 109.47377 * 59.99639 * 19 17 15 21 21 H 1.48500 * 109.46800 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46934 * 299.99223 * 19 17 15 23 23 C 1.52993 * 117.49829 * 80.61873 * 14 13 10 24 24 C 1.52994 * 117.49916 * 149.27779 * 14 13 10 25 25 H 1.09002 * 109.46727 * 60.00205 * 1 2 3 26 26 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46905 * 299.99995 * 1 2 3 28 28 H 1.08996 * 109.47373 * 239.99578 * 2 1 3 29 29 H 1.09010 * 109.47055 * 119.99892 * 2 1 3 30 30 H 1.08994 * 109.47259 * 60.00070 * 3 2 1 31 31 H 1.08999 * 109.46611 * 299.99676 * 3 2 1 32 32 H 1.08994 * 109.47025 * 60.00113 * 4 3 2 33 33 H 1.08999 * 109.47446 * 299.99350 * 4 3 2 34 34 H 1.08999 * 109.47783 * 35.00354 * 6 5 4 35 35 H 1.09009 * 109.46863 * 154.99745 * 6 5 4 36 36 H 1.09004 * 109.47242 * 300.00566 * 7 6 5 37 37 H 1.09005 * 109.46730 * 60.00566 * 7 6 5 38 38 H 1.09004 * 109.47257 * 300.00416 * 8 7 6 39 39 H 1.09001 * 109.47286 * 60.00552 * 8 7 6 40 40 H 0.96702 * 114.00427 * 179.97438 * 9 8 7 41 41 H 1.09001 * 109.46726 * 67.48673 * 13 10 5 42 42 H 1.08996 * 109.46824 * 307.48897 * 13 10 5 43 43 H 0.96999 * 120.00125 * 185.10711 * 18 17 15 44 44 H 1.09005 * 117.50041 * 215.00076 * 23 14 13 45 45 H 1.08998 * 117.50085 * 0.02562 * 23 14 13 46 46 H 1.09003 * 117.49856 * 359.97438 * 24 14 13 47 47 H 1.09005 * 117.49887 * 144.97166 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8237 0.0000 6 6 4.1989 3.5503 -1.2642 7 6 5.5561 3.2253 -1.8913 8 6 5.7030 3.9846 -3.2114 9 8 6.9703 3.6806 -3.7973 10 16 4.4517 3.5635 1.4285 11 8 5.4099 4.5466 1.0617 12 8 4.7968 2.4914 2.2950 13 6 2.9093 4.3492 1.9710 14 6 3.1863 5.2264 3.1935 15 6 3.6295 4.4927 4.4330 16 1 4.6820 4.3920 4.6535 17 6 2.6914 3.9547 5.2882 18 7 1.4177 3.9710 4.9613 19 14 3.2296 3.2030 6.9115 20 1 3.9135 4.2345 7.7321 21 1 2.0392 2.6989 7.6423 22 1 4.1637 2.0785 6.6506 23 6 3.7758 6.6164 2.9466 24 6 2.3158 6.4703 3.3823 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9331 0.9288 0.8909 34 1 3.4027 3.2511 -1.9458 35 1 4.1327 4.6221 -1.0765 36 1 6.3523 3.5246 -1.2097 37 1 5.6222 2.1535 -2.0790 38 1 4.9067 3.6857 -3.8931 39 1 5.6371 5.0563 -3.0234 40 1 7.1320 4.1281 -4.6392 41 1 2.1824 3.5802 2.2326 42 1 2.5121 4.9651 1.1642 43 1 0.7507 3.6605 5.5935 44 1 4.4844 7.0003 3.6806 45 1 3.9660 6.9061 1.9132 46 1 1.5460 6.6640 2.6353 47 1 2.0633 6.7578 4.4030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451381805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:35 Heat of formation + Delta-G solvation = -120.178347 kcal Electronic energy + Delta-G solvation = -26678.775720 eV Core-core repulsion = 22988.944054 eV Total energy + Delta-G solvation = -3689.831666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -37.76708 -36.80431 -36.73024 -36.29253 -35.06487 -34.45467 -32.04139 -31.63657 -28.49203 -28.17885 -25.47875 -25.16661 -23.05837 -21.60744 -21.21588 -20.90256 -19.47644 -18.31074 -17.47231 -17.11376 -16.51301 -15.95318 -15.41384 -15.18268 -15.12134 -14.72906 -14.39273 -13.99876 -13.82643 -13.62140 -13.29922 -13.02999 -12.88187 -12.82517 -12.32294 -11.95649 -11.84505 -11.66129 -11.35568 -11.33298 -11.25532 -11.18895 -11.06972 -11.00919 -10.89583 -10.87913 -10.68166 -10.57825 -10.45733 -10.38371 -10.10504 -10.05278 -9.70442 -8.96709 -8.83810 -8.54013 -8.07989 -6.14593 -4.25353 1.04155 3.27702 3.33086 3.35197 3.42278 4.12030 4.38256 4.61448 4.73304 4.84411 4.96395 5.02063 5.07031 5.11462 5.15322 5.19929 5.20324 5.32111 5.38893 5.48453 5.56101 5.60375 5.70378 5.73001 5.75575 5.86157 5.93743 5.97764 6.05768 6.19098 6.19798 6.27494 6.30748 6.36082 6.41221 6.46394 6.61947 6.71573 6.88021 6.98968 7.24574 7.38833 7.48923 7.79598 8.19748 8.80422 9.46655 10.93613 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.005044 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.751482 B = 5550.363916 C = 6893.470303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.146 4.146 4 C 0.115 3.885 5 N -1.008 6.008 6 C 0.132 3.868 7 C -0.143 4.143 8 C 0.079 3.921 9 O -0.575 6.575 10 S 2.603 3.397 11 O -0.968 6.968 12 O -0.948 6.948 13 C -0.553 4.553 14 C 0.043 3.957 15 C -0.515 4.515 16 H 0.067 0.933 17 C 0.083 3.917 18 N -0.873 5.873 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.269 1.269 23 C -0.207 4.207 24 C -0.140 4.140 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.377 0.623 41 H 0.133 0.867 42 H 0.096 0.904 43 H 0.263 0.737 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -2.853 -16.011 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.185 4.185 4 C -0.011 4.011 5 N -0.843 5.843 6 C 0.005 3.995 7 C -0.182 4.182 8 C 0.000 4.000 9 O -0.380 6.380 10 S 2.701 3.299 11 O -0.959 6.959 12 O -0.938 6.938 13 C -0.686 4.686 14 C 0.040 3.960 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.122 4.122 18 N -0.509 5.509 19 Si 0.714 3.286 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.244 4.244 24 C -0.179 4.179 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.223 0.777 41 H 0.151 0.849 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.083 -3.402 -15.059 15.439 hybrid contribution -0.799 0.147 0.212 0.840 sum -0.716 -3.255 -14.847 15.217 Atomic orbital electron populations 1.21767 0.95842 1.01353 1.02017 1.21445 0.95971 0.96477 1.02120 1.22150 0.95980 0.97396 1.03009 1.21376 0.93462 0.82167 1.04080 1.57944 1.82337 1.22409 1.21562 1.20972 0.96233 0.96463 0.85807 1.21982 0.99167 1.01162 0.95872 1.22102 0.84822 0.98659 0.94371 1.86501 1.37231 1.73221 1.41000 1.05381 0.77790 0.74585 0.72148 1.93493 1.58003 1.62286 1.82083 1.93521 1.82380 1.53615 1.64320 1.30067 1.19736 1.12067 1.06724 1.18283 1.00841 0.85117 0.91734 1.20493 0.93427 1.35511 1.05803 0.91520 1.24917 0.94832 0.94239 0.98211 1.69994 1.00249 1.45729 1.34904 0.86704 0.78416 0.80181 0.83280 1.19933 1.21087 1.19357 1.23184 0.97477 1.03619 1.00168 1.22537 0.91039 1.03797 1.00573 0.93000 0.92981 0.92307 0.92161 0.91506 0.91037 0.91670 0.90735 0.88661 0.90707 0.90144 0.89983 0.91055 0.93757 0.93254 0.77663 0.84862 0.88535 0.92728 0.89535 0.90769 0.91604 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.34 5.93 -26.73 -0.16 -1.50 16 3 C -0.15 -1.82 5.54 -26.73 -0.15 -1.97 16 4 C 0.11 1.56 5.66 -4.04 -0.02 1.54 16 5 N -1.01 -15.50 2.71 -114.38 -0.31 -15.82 16 6 C 0.13 1.64 5.26 -4.05 -0.02 1.62 16 7 C -0.14 -1.83 5.91 -26.73 -0.16 -1.99 16 8 C 0.08 0.81 7.05 37.16 0.26 1.07 16 9 O -0.57 -6.31 13.66 -35.23 -0.48 -6.79 16 10 S 2.60 53.45 5.09 -107.50 -0.55 52.90 16 11 O -0.97 -21.28 16.75 -57.54 -0.96 -22.24 16 12 O -0.95 -22.82 16.26 -57.54 -0.94 -23.76 16 13 C -0.55 -11.61 6.03 37.16 0.22 -11.39 16 14 C 0.04 1.04 1.33 -155.67 -0.21 0.83 16 15 C -0.52 -14.13 8.24 -34.44 -0.28 -14.42 16 16 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 17 C 0.08 2.26 5.39 -17.82 -0.10 2.17 16 18 N -0.87 -23.88 12.93 55.43 0.72 -23.17 16 19 Si 0.89 21.37 29.55 -169.99 -5.02 16.34 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.21 -4.55 9.96 -26.70 -0.27 -4.81 16 24 C -0.14 -3.18 9.43 -26.70 -0.25 -3.43 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 33 H 0.10 1.47 6.82 -51.93 -0.35 1.12 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.08 0.99 7.61 -51.92 -0.40 0.59 16 36 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.38 2.19 9.12 45.56 0.42 2.61 16 41 H 0.13 2.92 7.26 -51.92 -0.38 2.54 16 42 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 43 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 45 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -33.36 396.18 -10.14 -43.49 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.80 Total: 6.57 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -0.76 Total: -33.50 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.41 Total: -38.98 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.38 Total: -52.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.55 Total: 52.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.36 -10.14 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451381805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.684 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds