Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.53004 * 109.46760 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46737 * 179.97438 * 4 3 2 6 6 C 1.46493 * 119.99803 * 274.99984 * 5 4 3 7 7 C 1.52998 * 109.47439 * 274.99681 * 6 5 4 8 8 C 1.52997 * 109.47427 * 180.02562 * 7 6 5 9 9 O 1.42897 * 109.47295 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99822 * 94.99808 * 5 4 3 11 11 O 1.42102 * 104.27465 * 153.93021 * 10 5 4 12 12 O 1.42107 * 104.27799 * 26.07404 * 10 5 4 13 13 C 1.81400 * 104.45201 * 269.99971 * 10 5 4 14 14 C 1.53000 * 109.47141 * 187.48878 * 13 10 5 15 15 C 1.50702 * 115.54985 * 294.94615 * 14 13 10 16 16 H 1.08001 * 119.99462 * 95.18036 * 15 14 13 17 17 C 1.37874 * 120.00006 * 274.91190 * 15 14 13 18 18 N 1.31509 * 120.00245 * 6.38451 * 17 15 14 19 19 Si 1.86808 * 119.99769 * 186.39554 * 17 15 14 20 20 H 1.48496 * 109.47377 * 59.99639 * 19 17 15 21 21 H 1.48500 * 109.46800 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46934 * 299.99223 * 19 17 15 23 23 C 1.52993 * 117.49829 * 80.61873 * 14 13 10 24 24 C 1.52994 * 117.49916 * 149.27779 * 14 13 10 25 25 H 1.09002 * 109.46727 * 60.00205 * 1 2 3 26 26 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46905 * 299.99995 * 1 2 3 28 28 H 1.08996 * 109.47373 * 239.99578 * 2 1 3 29 29 H 1.09010 * 109.47055 * 119.99892 * 2 1 3 30 30 H 1.08994 * 109.47259 * 60.00070 * 3 2 1 31 31 H 1.08999 * 109.46611 * 299.99676 * 3 2 1 32 32 H 1.08994 * 109.47025 * 60.00113 * 4 3 2 33 33 H 1.08999 * 109.47446 * 299.99350 * 4 3 2 34 34 H 1.08999 * 109.47783 * 35.00354 * 6 5 4 35 35 H 1.09009 * 109.46863 * 154.99745 * 6 5 4 36 36 H 1.09004 * 109.47242 * 300.00566 * 7 6 5 37 37 H 1.09005 * 109.46730 * 60.00566 * 7 6 5 38 38 H 1.09004 * 109.47257 * 300.00416 * 8 7 6 39 39 H 1.09001 * 109.47286 * 60.00552 * 8 7 6 40 40 H 0.96702 * 114.00427 * 179.97438 * 9 8 7 41 41 H 1.09001 * 109.46726 * 67.48673 * 13 10 5 42 42 H 1.08996 * 109.46824 * 307.48897 * 13 10 5 43 43 H 0.96999 * 120.00125 * 185.10711 * 18 17 15 44 44 H 1.09005 * 117.50041 * 215.00076 * 23 14 13 45 45 H 1.08998 * 117.50085 * 0.02562 * 23 14 13 46 46 H 1.09003 * 117.49856 * 359.97438 * 24 14 13 47 47 H 1.09005 * 117.49887 * 144.97166 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8237 0.0000 6 6 4.1989 3.5503 -1.2642 7 6 5.5561 3.2253 -1.8913 8 6 5.7030 3.9846 -3.2114 9 8 6.9703 3.6806 -3.7973 10 16 4.4517 3.5635 1.4285 11 8 5.4099 4.5466 1.0617 12 8 4.7968 2.4914 2.2950 13 6 2.9093 4.3492 1.9710 14 6 3.1863 5.2264 3.1935 15 6 3.6295 4.4927 4.4330 16 1 4.6820 4.3920 4.6535 17 6 2.6914 3.9547 5.2882 18 7 1.4177 3.9710 4.9613 19 14 3.2296 3.2030 6.9115 20 1 3.9135 4.2345 7.7321 21 1 2.0392 2.6989 7.6423 22 1 4.1637 2.0785 6.6506 23 6 3.7758 6.6164 2.9466 24 6 2.3158 6.4703 3.3823 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9331 0.9288 0.8909 34 1 3.4027 3.2511 -1.9458 35 1 4.1327 4.6221 -1.0765 36 1 6.3523 3.5246 -1.2097 37 1 5.6222 2.1535 -2.0790 38 1 4.9067 3.6857 -3.8931 39 1 5.6371 5.0563 -3.0234 40 1 7.1320 4.1281 -4.6392 41 1 2.1824 3.5802 2.2326 42 1 2.5121 4.9651 1.1642 43 1 0.7507 3.6605 5.5935 44 1 4.4844 7.0003 3.6806 45 1 3.9660 6.9061 1.9132 46 1 1.5460 6.6640 2.6353 47 1 2.0633 6.7578 4.4030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451381805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = -143.913725 kcal Electronic energy + Delta-G solvation = -26679.804964 eV Core-core repulsion = 22988.944054 eV Total energy + Delta-G solvation = -3690.860909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.77144 -38.58067 -38.09019 -37.55018 -36.77667 -35.41634 -34.09850 -32.60982 -29.87830 -29.47561 -27.51783 -26.10587 -24.09867 -22.99990 -22.53617 -21.92652 -21.26588 -19.74522 -18.71583 -18.37070 -18.14494 -17.27227 -16.81977 -16.67453 -16.35776 -16.11831 -15.89228 -15.53784 -15.03655 -14.95521 -14.50250 -14.21217 -13.86419 -13.83148 -13.74932 -13.66680 -13.28366 -13.17268 -12.97080 -12.93800 -12.86104 -12.81220 -12.45454 -12.30134 -12.21725 -12.07997 -11.99578 -11.93430 -11.84317 -11.75389 -11.53972 -11.32837 -10.86688 -10.80683 -10.55732 -10.17111 -9.76561 -8.21626 -6.36262 -0.54733 1.36692 1.39745 1.46312 1.89929 2.38530 2.98356 3.06698 3.30010 3.37097 3.44963 3.68503 3.99753 4.01164 4.06165 4.17960 4.23537 4.29780 4.34980 4.45860 4.48619 4.50772 4.57811 4.65461 4.68731 4.72885 4.76992 4.81840 4.85070 4.96617 4.97903 5.02776 5.14855 5.19989 5.25715 5.29422 5.32760 5.43220 5.48007 5.53176 5.58395 5.69526 5.75379 6.20593 6.69773 6.97583 7.36613 8.85827 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.005044 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.751482 B = 5550.363916 C = 6893.470303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.110 3.890 5 N -0.999 5.999 6 C 0.123 3.877 7 C -0.145 4.145 8 C 0.080 3.920 9 O -0.600 6.600 10 S 2.613 3.387 11 O -0.988 6.988 12 O -0.995 6.995 13 C -0.548 4.548 14 C 0.008 3.992 15 C -0.535 4.535 16 H 0.044 0.956 17 C 0.045 3.955 18 N -0.889 5.889 19 Si 0.930 3.070 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.279 1.279 23 C -0.195 4.195 24 C -0.135 4.135 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.398 0.602 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.265 0.735 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -2.828 -18.768 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.182 4.182 4 C -0.015 4.015 5 N -0.836 5.836 6 C -0.001 4.001 7 C -0.184 4.184 8 C 0.002 3.998 9 O -0.409 6.409 10 S 2.711 3.289 11 O -0.978 6.978 12 O -0.985 6.985 13 C -0.681 4.681 14 C 0.006 3.994 15 C -0.573 4.573 16 H 0.062 0.938 17 C -0.158 4.158 18 N -0.524 5.524 19 Si 0.755 3.245 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.204 1.204 23 C -0.232 4.232 24 C -0.174 4.174 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.107 0.893 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.008 -3.354 -17.817 18.158 hybrid contribution -0.411 0.125 0.983 1.073 sum -1.419 -3.228 -16.835 17.200 Atomic orbital electron populations 1.21763 0.95360 1.02048 1.01740 1.21464 0.96376 0.95576 1.02607 1.22130 0.94793 0.98394 1.02861 1.21562 0.94450 0.81041 1.04404 1.57534 1.82200 1.22952 1.20914 1.21336 0.97496 0.96512 0.84804 1.21979 0.98040 1.01724 0.96694 1.22106 0.85557 0.98562 0.93573 1.86440 1.37814 1.73979 1.42643 1.04737 0.77512 0.73876 0.72754 1.93456 1.58843 1.62984 1.82554 1.93457 1.83255 1.55074 1.66762 1.29932 1.19763 1.11794 1.06564 1.18421 1.02749 0.86168 0.92095 1.20666 0.92511 1.36324 1.07758 0.93754 1.25462 0.95086 0.94701 1.00547 1.70032 1.00560 1.46302 1.35552 0.86052 0.78368 0.79317 0.80808 1.19220 1.19607 1.20426 1.23229 0.96897 1.01660 1.01452 1.22495 0.92005 1.02680 1.00243 0.91594 0.91862 0.94236 0.89724 0.93016 0.93805 0.89108 0.87369 0.91346 0.86300 0.89805 0.93931 0.90843 0.90494 0.92692 0.75175 0.86218 0.84948 0.92540 0.90118 0.88190 0.89258 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.17 16 2 C -0.12 -2.46 5.93 30.60 0.18 -2.27 16 3 C -0.14 -3.28 5.54 30.60 0.17 -3.11 16 4 C 0.11 2.85 5.66 86.38 0.49 3.34 16 5 N -1.00 -29.39 2.71 -515.78 -1.40 -30.79 16 6 C 0.12 2.71 5.26 86.38 0.45 3.16 16 7 C -0.14 -3.44 5.91 30.59 0.18 -3.26 16 8 C 0.08 1.40 7.05 71.98 0.51 1.91 16 9 O -0.60 -11.86 13.66 -148.98 -2.03 -13.89 16 10 S 2.61 108.28 5.09 -56.49 -0.29 107.99 16 11 O -0.99 -43.65 16.75 -127.65 -2.14 -45.79 16 12 O -1.00 -49.98 16.26 -127.65 -2.08 -52.06 16 13 C -0.55 -22.80 6.03 71.98 0.43 -22.36 16 14 C 0.01 0.38 1.33 -52.93 -0.07 0.31 16 15 C -0.54 -30.18 8.24 25.60 0.21 -29.97 16 16 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 17 C 0.05 2.51 5.39 84.65 0.46 2.96 16 18 N -0.89 -49.15 12.93 21.45 0.28 -48.87 16 19 Si 0.93 44.50 29.55 68.60 2.03 46.53 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 23 C -0.20 -8.42 9.96 30.61 0.30 -8.12 16 24 C -0.14 -6.04 9.43 30.61 0.29 -5.75 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.04 1.25 7.26 -2.39 -0.02 1.24 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 2.09 8.11 -2.39 -0.02 2.07 16 33 H 0.07 2.16 6.82 -2.39 -0.02 2.14 16 34 H 0.12 1.63 8.11 -2.39 -0.02 1.61 16 35 H 0.08 1.81 7.61 -2.38 -0.02 1.80 16 36 H 0.04 1.33 7.90 -2.39 -0.02 1.32 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.40 3.63 9.12 -74.06 -0.68 2.96 16 41 H 0.12 5.32 7.26 -2.39 -0.02 5.31 16 42 H 0.13 4.38 8.09 -2.39 -0.02 4.36 16 43 H 0.27 13.97 8.32 -92.71 -0.77 13.20 16 44 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16 45 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 46 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 47 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -74.56 396.18 -1.06 -75.62 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.25 Total: 26.60 kcal Atomic # 6 Polarization: -69.66 SS G_CDS: 4.32 Total: -65.34 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -1.12 Total: -79.66 kcal Atomic # 8 Polarization: -105.49 SS G_CDS: -6.25 Total: -111.74 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 108.28 SS G_CDS: -0.29 Total: 107.99 kcal Total: -74.56 -1.06 -75.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451381805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.290 kcal (2) G-P(sol) polarization free energy of solvation -74.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds