Wall clock time and date at job start Tue Mar 31 2020 12:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21628 * 119.99665 * 0.02562 * 15 14 13 17 17 C 1.47266 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.36501 * 127.46057 * 359.68148 * 17 15 14 19 19 O 1.34150 * 109.01197 * 179.89157 * 18 17 15 20 20 C 1.32986 * 111.38241 * 0.33675 * 19 18 17 21 21 C 1.37193 * 108.11044 * 359.85874 * 20 19 18 22 22 C 1.46582 * 122.36867 * 179.82812 * 21 20 19 23 23 O 1.21341 * 122.43322 * 168.84270 * 22 21 20 24 24 C 1.52217 * 115.14082 * 348.86210 * 22 21 20 25 25 C 1.53235 * 108.23419 * 42.08604 * 24 22 21 26 26 C 1.50810 * 129.14415 * 179.90267 * 20 19 18 27 27 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 29 29 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 32 32 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 33 33 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 35 35 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 38 38 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 39 39 H 1.07994 * 125.49191 * 0.02562 * 18 17 15 40 40 H 1.09002 * 109.70924 * 161.77061 * 24 22 21 41 41 H 1.08998 * 109.71097 * 282.35627 * 24 22 21 42 42 H 1.09002 * 109.23871 * 56.09899 * 25 24 22 43 43 H 1.08993 * 109.24334 * 175.49532 * 25 24 22 44 44 H 1.08999 * 109.49073 * 39.34533 * 26 20 19 45 45 H 1.09001 * 109.51691 * 279.27807 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5759 -1.4800 3.7812 17 6 1.3853 0.2028 4.8720 18 6 0.6027 1.3200 4.9243 19 8 0.3743 1.6338 6.2084 20 6 0.9760 0.7793 7.0308 21 6 1.6358 -0.1522 6.2698 22 6 2.4108 -1.2449 6.8647 23 8 2.8286 -2.1776 6.2106 24 6 2.6532 -1.1250 8.3626 25 6 1.3545 -0.6489 9.0219 26 6 0.9872 0.7569 8.5387 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2493 34 1 1.6767 -1.7489 -1.2491 35 1 2.8610 -1.8832 -4.7335 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2494 38 1 0.9936 0.7580 2.3564 39 1 0.2262 1.8623 4.0697 40 1 2.9367 -2.0963 8.7680 41 1 3.4476 -0.4025 8.5498 42 1 0.5490 -1.3380 8.7676 43 1 1.4853 -0.6341 10.1039 44 1 -0.0007 1.0241 8.9138 45 1 1.7222 1.4721 8.9081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451776306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:49 Heat of formation + Delta-G solvation = -79.173505 kcal Electronic energy + Delta-G solvation = -26684.035285 eV Core-core repulsion = 22860.537771 eV Total energy + Delta-G solvation = -3823.497514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.11110 -39.40065 -39.14741 -37.00692 -36.18629 -33.67296 -32.93813 -31.99176 -30.18098 -28.71755 -27.12580 -26.52383 -26.29847 -23.99563 -23.17472 -22.90634 -22.20251 -19.85393 -19.02469 -18.44996 -17.56367 -16.94125 -16.43380 -16.29430 -15.68768 -15.34763 -15.06751 -14.91705 -14.69633 -14.57564 -14.48608 -14.26396 -13.50691 -13.48891 -13.22833 -13.14499 -12.76595 -12.69744 -12.14417 -12.11756 -12.05632 -11.66558 -11.51615 -11.16257 -11.02022 -10.85401 -10.64202 -10.40461 -10.25687 -10.03436 -9.88172 -9.87358 -9.67280 -9.17889 -8.92325 -8.91429 -8.67012 -8.35333 -5.99181 -4.00629 0.84171 1.13262 2.20185 2.63585 3.31081 3.32587 3.38290 3.40038 3.51447 3.77031 4.11150 4.23332 4.33811 4.38656 4.45621 4.62981 4.80057 4.90128 5.05492 5.15500 5.19780 5.30918 5.36172 5.45766 5.55130 5.59863 5.63268 5.66386 5.74506 5.86673 6.15257 6.21848 6.31912 6.39796 6.51663 6.56711 6.61877 6.76370 7.05355 7.07143 7.12681 7.54532 7.65061 7.76181 7.77456 7.99449 8.40475 8.48838 9.04138 9.62348 11.12278 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031195 B = 0.002505 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.376561 B =11175.852425 C =11842.872644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.130 3.870 14 N -0.719 5.719 15 C 0.566 3.434 16 O -0.506 6.506 17 C -0.170 4.170 18 C 0.001 3.999 19 O -0.157 6.157 20 C 0.044 3.956 21 C -0.225 4.225 22 C 0.405 3.595 23 O -0.405 6.405 24 C -0.164 4.164 25 C -0.112 4.112 26 C -0.041 4.041 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.393 0.607 39 H 0.218 0.782 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 8.416 27.558 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.008 3.992 14 N -0.371 5.371 15 C 0.351 3.649 16 O -0.381 6.381 17 C -0.174 4.174 18 C -0.067 4.067 19 O -0.051 6.051 20 C -0.009 4.009 21 C -0.228 4.228 22 C 0.278 3.722 23 O -0.276 6.276 24 C -0.201 4.201 25 C -0.149 4.149 26 C -0.078 4.078 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.228 0.772 39 H 0.234 0.766 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.782 7.275 27.229 28.587 hybrid contribution -0.570 0.899 -1.274 1.660 sum -5.352 8.174 25.955 27.733 Atomic orbital electron populations 1.21765 0.95286 1.01242 1.00125 1.20909 0.95453 0.95844 0.95055 1.21764 1.00636 0.95884 1.00125 1.19093 0.96420 0.95275 0.89419 1.21173 1.31205 1.12050 0.90503 0.92271 1.25024 0.95354 0.95070 0.99096 1.69969 1.36929 1.22978 1.23446 0.86644 0.79145 0.79404 0.83083 1.20784 1.21345 1.19967 1.21650 0.99024 0.96066 0.82484 1.46050 1.53539 1.31951 1.05581 1.17224 0.81268 0.84348 0.82060 1.90923 1.36332 1.24673 1.86166 1.21202 1.03812 0.98436 0.93963 1.24585 1.00540 0.97638 0.83945 1.83426 1.58341 1.47117 1.16174 1.23155 0.94950 0.88985 0.93767 1.21731 1.07573 1.01716 0.91780 1.21850 0.76822 0.83452 0.90027 1.90717 1.40037 1.30891 1.65933 1.22419 0.99310 1.04645 0.93772 1.21551 0.97402 0.94779 1.01203 1.20342 1.04535 0.99348 0.83569 0.95397 0.91370 0.93291 0.93296 0.91377 0.95392 0.96284 0.96270 0.93027 0.91659 0.91638 0.77169 0.76601 0.88410 0.88078 0.90613 0.88921 0.88534 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.13 2.40 4.56 -4.04 -0.02 2.38 16 14 N -0.72 -10.99 4.95 -61.43 -0.30 -11.29 16 15 C 0.57 9.68 7.81 -12.59 -0.10 9.58 16 16 O -0.51 -11.00 14.70 -16.03 -0.24 -11.24 16 17 C -0.17 -2.31 6.31 -103.58 -0.65 -2.96 16 18 C 0.00 0.01 11.60 30.11 0.35 0.36 16 19 O -0.16 -1.42 10.46 9.46 0.10 -1.32 16 20 C 0.04 0.39 7.37 -34.63 -0.26 0.13 16 21 C -0.23 -2.83 6.23 -103.64 -0.65 -3.48 16 22 C 0.41 5.33 7.07 -30.19 -0.21 5.11 16 23 O -0.41 -7.42 15.67 -15.78 -0.25 -7.66 16 24 C -0.16 -1.17 6.18 -27.01 -0.17 -1.34 16 25 C -0.11 -0.48 5.81 -26.55 -0.15 -0.64 16 26 C -0.04 -0.18 6.24 -27.76 -0.17 -0.35 16 27 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.39 4.79 5.15 -40.82 -0.21 4.58 16 39 H 0.22 1.24 7.48 -52.49 -0.39 0.85 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -36.43 364.18 -7.98 -44.41 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.51 Total: -0.65 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.99 Total: -8.10 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.43 Total: -37.16 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.38 Total: -20.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.43 -7.98 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451776306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.761 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds