Wall clock time and date at job start Tue Mar 31 2020 12:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21628 * 119.99665 * 0.02562 * 15 14 13 17 17 C 1.47266 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.36501 * 127.46057 * 359.68148 * 17 15 14 19 19 O 1.34150 * 109.01197 * 179.89157 * 18 17 15 20 20 C 1.32986 * 111.38241 * 0.33675 * 19 18 17 21 21 C 1.37193 * 108.11044 * 359.85874 * 20 19 18 22 22 C 1.46582 * 122.36867 * 179.82812 * 21 20 19 23 23 O 1.21341 * 122.43322 * 168.84270 * 22 21 20 24 24 C 1.52217 * 115.14082 * 348.86210 * 22 21 20 25 25 C 1.53235 * 108.23419 * 42.08604 * 24 22 21 26 26 C 1.50810 * 129.14415 * 179.90267 * 20 19 18 27 27 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 29 29 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 32 32 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 33 33 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 35 35 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 38 38 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 39 39 H 1.07994 * 125.49191 * 0.02562 * 18 17 15 40 40 H 1.09002 * 109.70924 * 161.77061 * 24 22 21 41 41 H 1.08998 * 109.71097 * 282.35627 * 24 22 21 42 42 H 1.09002 * 109.23871 * 56.09899 * 25 24 22 43 43 H 1.08993 * 109.24334 * 175.49532 * 25 24 22 44 44 H 1.08999 * 109.49073 * 39.34533 * 26 20 19 45 45 H 1.09001 * 109.51691 * 279.27807 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5759 -1.4800 3.7812 17 6 1.3853 0.2028 4.8720 18 6 0.6027 1.3200 4.9243 19 8 0.3743 1.6338 6.2084 20 6 0.9760 0.7793 7.0308 21 6 1.6358 -0.1522 6.2698 22 6 2.4108 -1.2449 6.8647 23 8 2.8286 -2.1776 6.2106 24 6 2.6532 -1.1250 8.3626 25 6 1.3545 -0.6489 9.0219 26 6 0.9872 0.7569 8.5387 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2493 34 1 1.6767 -1.7489 -1.2491 35 1 2.8610 -1.8832 -4.7335 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2494 38 1 0.9936 0.7580 2.3564 39 1 0.2262 1.8623 4.0697 40 1 2.9367 -2.0963 8.7680 41 1 3.4476 -0.4025 8.5498 42 1 0.5490 -1.3380 8.7676 43 1 1.4853 -0.6341 10.1039 44 1 -0.0007 1.0241 8.9138 45 1 1.7222 1.4721 8.9081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451776306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:48 Heat of formation + Delta-G solvation = -103.308698 kcal Electronic energy + Delta-G solvation = -26685.081865 eV Core-core repulsion = 22860.537771 eV Total energy + Delta-G solvation = -3824.544094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.88592 -40.75636 -40.12279 -38.60393 -36.82142 -35.31660 -34.24893 -33.51393 -30.84375 -29.54006 -29.01336 -27.97381 -27.70547 -25.41173 -24.32281 -23.54600 -23.41837 -21.11472 -19.85776 -19.70810 -18.65797 -18.36077 -17.71015 -17.36688 -16.86466 -16.46537 -16.36986 -16.27656 -15.92834 -15.49899 -15.39766 -15.12434 -14.95876 -14.87647 -14.61963 -14.26728 -13.95183 -13.81234 -13.73691 -13.45406 -12.88201 -12.72796 -12.67361 -12.60533 -12.35309 -12.24359 -12.09402 -11.99326 -11.94812 -11.56229 -11.30477 -11.01254 -10.95718 -10.85699 -10.63001 -10.52546 -10.14507 -9.62254 -8.14558 -6.23020 0.00202 0.25851 1.42219 1.43204 1.52513 1.53558 1.69656 2.08220 2.33726 2.44381 3.05323 3.19861 3.43873 3.50571 3.77505 3.91354 3.98117 4.04566 4.10525 4.12794 4.19740 4.27189 4.49249 4.65414 4.65961 4.67897 4.75447 4.77909 4.87840 4.93828 4.94359 5.07434 5.10310 5.11199 5.20014 5.26329 5.34045 5.43135 5.48854 5.51437 5.55350 5.74595 5.78589 5.88572 6.28300 6.52338 6.67928 6.92316 7.22044 7.44925 8.98278 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031195 B = 0.002505 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.376561 B =11175.852425 C =11842.872644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.122 4.122 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.077 0.923 7 C -0.009 4.009 8 N -0.941 5.941 9 Si 0.962 3.038 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.257 1.257 13 C 0.144 3.856 14 N -0.701 5.701 15 C 0.564 3.436 16 O -0.566 6.566 17 C -0.221 4.221 18 C 0.042 3.958 19 O -0.148 6.148 20 C 0.081 3.919 21 C -0.281 4.281 22 C 0.393 3.607 23 O -0.483 6.483 24 C -0.156 4.156 25 C -0.106 4.106 26 C -0.041 4.041 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.074 0.926 33 H -0.016 1.016 34 H -0.017 1.017 35 H 0.259 0.741 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.413 0.587 39 H 0.260 0.740 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 12.841 30.412 34.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.063 4.063 3 C -0.179 4.179 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.095 0.905 7 C -0.205 4.205 8 N -0.582 5.582 9 Si 0.787 3.213 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.180 1.180 13 C 0.020 3.980 14 N -0.354 5.354 15 C 0.352 3.648 16 O -0.446 6.446 17 C -0.225 4.225 18 C -0.027 4.027 19 O -0.041 6.041 20 C 0.028 3.972 21 C -0.284 4.284 22 C 0.272 3.728 23 O -0.359 6.359 24 C -0.194 4.194 25 C -0.143 4.143 26 C -0.077 4.077 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.251 0.749 39 H 0.275 0.725 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.083 0.917 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.618 11.779 30.120 33.226 hybrid contribution 0.289 -0.454 -2.061 2.130 sum -7.329 11.325 28.058 31.133 Atomic orbital electron populations 1.21708 0.93261 1.00969 1.01982 1.20702 0.96932 0.96435 0.92209 1.21708 0.99863 0.94327 1.02012 1.18989 0.94212 0.94197 0.92578 1.21585 1.30422 1.12095 0.90843 0.90535 1.26015 0.95698 0.95864 1.02939 1.70143 1.38887 1.25085 1.24104 0.85487 0.79261 0.78027 0.78518 1.20101 1.21733 1.18040 1.21223 0.97631 0.95308 0.83871 1.45724 1.53422 1.32127 1.04163 1.17806 0.80112 0.83646 0.83238 1.90900 1.39131 1.27499 1.87021 1.21007 1.07433 1.01048 0.93032 1.25199 0.97132 0.95274 0.85102 1.83517 1.57815 1.46741 1.15982 1.23980 0.91441 0.86391 0.95412 1.21998 1.10435 1.03672 0.92256 1.22971 0.74940 0.82249 0.92662 1.90682 1.43425 1.33662 1.68122 1.22485 1.01879 1.05661 0.89353 1.21626 0.95028 0.94548 1.03114 1.20744 1.07260 0.99868 0.79873 0.90793 0.92099 0.94747 0.94670 0.92079 0.90763 0.99809 0.99855 0.93209 0.93956 0.94085 0.74870 0.72483 0.88375 0.85901 0.91652 0.84892 0.85424 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.62 7.65 25.60 0.20 -27.42 16 6 H 0.08 3.80 5.68 -2.91 -0.02 3.79 16 7 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 8 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.14 5.58 4.56 86.38 0.39 5.98 16 14 N -0.70 -21.28 4.95 -466.50 -2.31 -23.58 16 15 C 0.56 20.08 7.81 86.62 0.68 20.75 16 16 O -0.57 -26.93 14.70 16.23 0.24 -26.69 16 17 C -0.22 -5.87 6.31 -19.19 -0.12 -5.99 16 18 C 0.04 0.63 11.60 67.41 0.78 1.42 16 19 O -0.15 -1.99 10.46 10.94 0.11 -1.88 16 20 C 0.08 1.14 7.37 25.47 0.19 1.33 16 21 C -0.28 -6.94 6.23 -19.23 -0.12 -7.06 16 22 C 0.39 10.87 7.07 28.35 0.20 11.07 16 23 O -0.48 -19.63 15.67 17.13 0.27 -19.36 16 24 C -0.16 -2.02 6.18 30.41 0.19 -1.83 16 25 C -0.11 -0.51 5.81 30.71 0.18 -0.33 16 26 C -0.04 -0.14 6.24 29.92 0.19 0.05 16 27 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 28 H 0.06 2.15 6.62 -2.39 -0.02 2.13 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 32 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.41 8.80 5.15 -92.71 -0.48 8.32 16 39 H 0.26 1.43 7.48 -2.91 -0.02 1.41 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -91.27 364.18 5.62 -85.65 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.54 Total: 7.47 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.46 Total: -9.38 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.02 Total: -81.70 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: 0.62 Total: -47.93 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -91.27 5.62 -85.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451776306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.657 kcal (2) G-P(sol) polarization free energy of solvation -91.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds