Wall clock time and date at job start Tue Mar 31 2020 13:19:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47122 * 2 1
4 4 C 1.50692 * 109.47000 * 239.99721 * 2 1 3
5 5 H 1.08003 * 120.00032 * 239.99700 * 4 2 1
6 6 C 1.37877 * 119.99899 * 60.00385 * 4 2 1
7 7 N 1.31513 * 119.99976 * 359.97438 * 6 4 2
8 8 Si 1.86802 * 119.99946 * 179.97438 * 6 4 2
9 9 H 1.48507 * 109.47015 * 60.00003 * 8 6 4
10 10 H 1.48498 * 109.47287 * 179.97438 * 8 6 4
11 11 H 1.48493 * 109.47458 * 300.00183 * 8 6 4
12 12 C 1.53007 * 109.46803 * 120.00065 * 2 1 3
13 13 N 1.46498 * 109.46950 * 299.99717 * 12 2 1
14 14 C 1.34774 * 120.00155 * 180.02562 * 13 12 2
15 15 O 1.21593 * 119.99706 * 359.97438 * 14 13 12
16 16 C 1.47604 * 120.00590 * 180.02562 * 14 13 12
17 17 C 1.39703 * 120.04515 * 0.02562 * 16 14 13
18 18 C 1.37875 * 120.07522 * 179.97438 * 17 16 14
19 19 C 1.38778 * 119.91294 * 0.02562 * 18 17 16
20 20 C 1.39028 * 120.29130 * 359.97438 * 19 18 17
21 21 C 1.38054 * 120.21513 * 0.02562 * 20 19 18
22 22 O 1.36497 * 119.58315 * 179.97438 * 20 19 18
23 23 C 1.42715 * 115.88467 * 68.26673 * 22 20 19
24 24 C 1.52065 * 110.87111 * 275.53601 * 23 22 20
25 25 C 1.52064 * 112.29068 * 64.86073 * 24 23 22
26 26 O 1.36316 * 120.15188 * 179.97438 * 19 18 17
27 27 H 1.09010 * 109.47236 * 300.00213 * 1 2 3
28 28 H 1.08999 * 109.47509 * 59.99948 * 1 2 3
29 29 H 1.09000 * 109.47607 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46719 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46882 * 299.99599 * 3 2 1
32 32 H 1.08998 * 109.47376 * 60.00156 * 3 2 1
33 33 H 0.97007 * 119.99244 * 180.02562 * 7 6 4
34 34 H 1.09006 * 109.46838 * 180.02562 * 12 2 1
35 35 H 1.08995 * 109.47147 * 59.99829 * 12 2 1
36 36 H 0.97003 * 120.00388 * 359.97438 * 13 12 2
37 37 H 1.08000 * 119.96417 * 359.97438 * 17 16 14
38 38 H 1.08002 * 120.04485 * 180.02562 * 18 17 16
39 39 H 1.07997 * 120.19485 * 180.02562 * 21 20 19
40 40 H 1.08997 * 109.08776 * 155.22379 * 23 22 20
41 41 H 1.09000 * 109.24929 * 35.94761 * 23 22 20
42 42 H 1.09002 * 108.90269 * 304.16479 * 24 23 22
43 43 H 1.09000 * 108.90112 * 185.55465 * 24 23 22
44 44 H 1.09002 * 109.21338 * 55.54629 * 25 24 23
45 45 H 1.08998 * 109.21069 * 174.87220 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0322 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6992 -0.2394 -2.4826
7 7 0.9428 0.8297 -2.6033
8 14 2.3224 -1.1196 -4.0079
9 1 1.8279 -2.5199 -4.0080
10 1 1.8269 -0.4200 -5.2204
11 1 3.8073 -1.1192 -4.0077
12 6 2.0399 -0.7213 1.2493
13 7 1.5516 -0.0306 2.4454
14 6 1.8775 -0.4908 3.6695
15 8 2.5765 -1.4794 3.7811
16 6 1.3851 0.2047 4.8748
17 6 0.5806 1.3398 4.7477
18 6 0.1198 1.9896 5.8731
19 6 0.4567 1.5150 7.1329
20 6 1.2569 0.3859 7.2661
21 6 1.7230 -0.2714 6.1452
22 8 1.5798 -0.0680 8.5122
23 6 0.5032 -0.6106 9.2759
24 6 -0.2576 0.4903 9.9981
25 6 -0.9519 1.4396 9.0341
26 8 0.0043 2.1540 8.2488
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 3.1300 1.4424 -0.0005
31 1 1.6767 1.9563 -0.8900
32 1 1.6767 1.9564 0.8900
33 1 0.7082 1.1608 -3.4844
34 1 3.1300 -0.7209 1.2495
35 1 1.6765 -1.7489 1.2493
36 1 0.9943 0.7583 2.3564
37 1 0.3193 1.7087 3.7669
38 1 -0.5024 2.8668 5.7743
39 1 2.3443 -1.1487 6.2490
40 1 0.9036 -1.3105 10.0093
41 1 -0.1783 -1.1404 8.6104
42 1 0.4415 1.0588 10.6114
43 1 -1.0064 0.0354 10.6464
44 1 -1.6027 0.8670 8.3733
45 1 -1.5531 2.1502 9.6012
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000457984883.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:19:54
Heat of formation + Delta-G solvation = -89.107491 kcal
Electronic energy + Delta-G solvation = -26779.592966 eV
Core-core repulsion = 22955.664682 eV
Total energy + Delta-G solvation = -3823.928284 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.16791 -39.55056 -37.77368 -37.39162 -36.31848 -33.54282 -33.10219 -31.04079
-30.89272 -29.41996 -26.95649 -25.75692 -25.75021 -25.08449 -23.20080 -22.82700
-21.93625 -20.33518 -19.04705 -18.65359 -17.78636 -17.23193 -16.43238 -15.92117
-15.72871 -15.70452 -15.06712 -14.78285 -14.72426 -14.44422 -14.19787 -14.16822
-13.92500 -13.33302 -13.13024 -12.94708 -12.92404 -12.24101 -12.08661 -12.00820
-11.63269 -11.40703 -11.22319 -11.17519 -10.86526 -10.76906 -10.74650 -10.41367
-10.24897 -10.22331 -9.71597 -9.66462 -9.31291 -9.09715 -8.82577 -8.77694
-8.46687 -8.33238 -6.03872 -4.13988 0.53840 0.98775 2.69143 3.12135
3.29448 3.33790 3.35029 3.38138 3.67146 3.82230 4.24475 4.31273
4.38857 4.59713 4.71390 4.83304 4.89097 4.92399 4.93245 5.04740
5.11681 5.23008 5.28270 5.34119 5.55292 5.65168 5.89044 6.03178
6.08077 6.16442 6.27695 6.29495 6.47970 6.73312 6.78529 6.81261
6.90400 6.95990 6.99028 7.27837 7.32263 7.52841 7.67405 7.96991
7.98420 8.11873 8.35823 8.59279 8.86351 9.51927 10.97582
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.033461 B = 0.002503 C = 0.002395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.594245 B =11185.519417 C =11689.493407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.056 3.944
3 C -0.132 4.132
4 C -0.507 4.507
5 H 0.057 0.943
6 C 0.067 3.933
7 N -0.886 5.886
8 Si 0.894 3.106
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.277 1.277
12 C 0.131 3.869
13 N -0.708 5.708
14 C 0.547 3.453
15 O -0.545 6.545
16 C -0.117 4.117
17 C -0.077 4.077
18 C -0.122 4.122
19 C 0.084 3.916
20 C 0.055 3.945
21 C -0.059 4.059
22 O -0.316 6.316
23 C 0.057 3.943
24 C -0.187 4.187
25 C 0.060 3.940
26 O -0.319 6.319
27 H 0.005 0.995
28 H 0.086 0.914
29 H 0.027 0.973
30 H 0.028 0.972
31 H 0.086 0.914
32 H 0.005 0.995
33 H 0.261 0.739
34 H 0.058 0.942
35 H 0.057 0.943
36 H 0.398 0.602
37 H 0.139 0.861
38 H 0.142 0.858
39 H 0.148 0.852
40 H 0.104 0.896
41 H 0.059 0.941
42 H 0.084 0.916
43 H 0.090 0.910
44 H 0.059 0.941
45 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.529 2.608 22.098 23.190
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.055 3.945
3 C -0.190 4.190
4 C -0.545 4.545
5 H 0.076 0.924
6 C -0.135 4.135
7 N -0.525 5.525
8 Si 0.722 3.278
9 H -0.203 1.203
10 H -0.213 1.213
11 H -0.203 1.203
12 C 0.008 3.992
13 N -0.359 5.359
14 C 0.333 3.667
15 O -0.425 6.425
16 C -0.120 4.120
17 C -0.096 4.096
18 C -0.141 4.141
19 C 0.039 3.961
20 C 0.011 3.989
21 C -0.078 4.078
22 O -0.232 6.232
23 C -0.017 4.017
24 C -0.225 4.225
25 C -0.015 4.015
26 O -0.236 6.236
27 H 0.024 0.976
28 H 0.105 0.895
29 H 0.046 0.954
30 H 0.047 0.953
31 H 0.105 0.895
32 H 0.024 0.976
33 H 0.071 0.929
34 H 0.076 0.924
35 H 0.076 0.924
36 H 0.234 0.766
37 H 0.157 0.843
38 H 0.159 0.841
39 H 0.166 0.834
40 H 0.122 0.878
41 H 0.077 0.923
42 H 0.102 0.898
43 H 0.109 0.891
44 H 0.077 0.923
45 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -5.890 2.190 22.141 23.015
hybrid contribution -0.223 -0.203 -0.825 0.878
sum -6.113 1.987 21.316 22.264
Atomic orbital electron populations
1.21845 0.97750 0.99254 1.00074 1.18359 0.92804 0.92784 0.90513
1.21848 0.98734 0.98306 1.00090 1.20937 1.31590 1.12151 0.89849
0.92436 1.24875 0.94833 0.94915 0.98853 1.69792 1.36582 1.22735
1.23363 0.86623 0.79262 0.79777 0.82138 1.20283 1.21331 1.20260
1.21795 0.98367 0.95876 0.83113 1.46259 1.52136 1.31626 1.05847
1.18074 0.80947 0.84294 0.83347 1.90761 1.38524 1.26320 1.86886
1.20069 1.00822 0.97289 0.93828 1.21334 0.95401 0.93759 0.99091
1.21023 1.01407 1.01592 0.90037 1.19382 0.96520 0.92920 0.87262
1.18992 0.99924 0.94378 0.85618 1.21178 0.98227 0.99056 0.89345
1.86380 1.33829 1.78934 1.24076 1.22625 0.89431 0.94783 0.94910
1.22483 1.01390 0.98548 1.00091 1.22649 0.89726 0.95928 0.93206
1.86317 1.59637 1.42553 1.35059 0.97597 0.89497 0.95355 0.95310
0.89502 0.97556 0.92925 0.92403 0.92423 0.76585 0.84337 0.84062
0.83394 0.87766 0.92294 0.89759 0.89117 0.92256 0.87737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16
2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16
3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16
4 C -0.51 -13.10 8.01 -34.44 -0.28 -13.38 16
5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16
6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16
7 N -0.89 -23.31 9.35 55.43 0.52 -22.79 16
8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16
9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
12 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16
13 N -0.71 -12.53 4.91 -61.32 -0.30 -12.84 16
14 C 0.55 9.73 7.76 -12.44 -0.10 9.63 16
15 O -0.55 -11.50 16.34 5.28 0.09 -11.41 16
16 C -0.12 -1.69 5.88 -104.94 -0.62 -2.30 16
17 C -0.08 -0.92 9.53 -39.17 -0.37 -1.29 16
18 C -0.12 -1.33 9.98 -39.51 -0.39 -1.73 16
19 C 0.08 1.01 5.74 -39.09 -0.22 0.78 16
20 C 0.05 0.71 5.72 -39.36 -0.23 0.48 16
21 C -0.06 -0.82 9.54 -39.06 -0.37 -1.19 16
22 O -0.32 -3.88 10.16 -36.77 -0.37 -4.25 16
23 C 0.06 0.47 6.49 36.68 0.24 0.71 16
24 C -0.19 -1.22 5.93 -27.68 -0.16 -1.38 16
25 C 0.06 0.44 6.51 36.68 0.24 0.68 16
26 O -0.32 -3.58 10.15 -36.19 -0.37 -3.95 16
27 H 0.01 0.10 6.86 -51.92 -0.36 -0.26 16
28 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16
29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16
30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16
32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16
33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16
34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
36 H 0.40 6.24 4.18 -40.82 -0.17 6.07 16
37 H 0.14 1.43 6.38 -52.49 -0.34 1.10 16
38 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16
39 H 0.15 2.12 7.65 -52.49 -0.40 1.72 16
40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16
42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16
44 H 0.06 0.41 7.93 -51.93 -0.41 -0.01 16
45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16
LS Contribution 358.36 15.07 5.40 5.40
Total: -1.00 -30.00 358.36 -8.33 -38.34
By element:
Atomic # 1 Polarization: 11.03 SS G_CDS: -6.42 Total: 4.61 kcal
Atomic # 6 Polarization: -6.79 SS G_CDS: -1.85 Total: -8.65 kcal
Atomic # 7 Polarization: -35.84 SS G_CDS: 0.22 Total: -35.62 kcal
Atomic # 8 Polarization: -18.96 SS G_CDS: -0.65 Total: -19.61 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -30.00 -8.33 -38.34 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457984883.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.772 kcal
(2) G-P(sol) polarization free energy of solvation -30.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.107 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds