Wall clock time and date at job start Tue Mar 31 2020 13:19:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47122 * 2 1
4 4 C 1.50692 * 109.47000 * 239.99721 * 2 1 3
5 5 H 1.08003 * 120.00032 * 239.99700 * 4 2 1
6 6 C 1.37877 * 119.99899 * 60.00385 * 4 2 1
7 7 N 1.31513 * 119.99976 * 359.97438 * 6 4 2
8 8 Si 1.86802 * 119.99946 * 179.97438 * 6 4 2
9 9 H 1.48507 * 109.47015 * 60.00003 * 8 6 4
10 10 H 1.48498 * 109.47287 * 179.97438 * 8 6 4
11 11 H 1.48493 * 109.47458 * 300.00183 * 8 6 4
12 12 C 1.53007 * 109.46803 * 120.00065 * 2 1 3
13 13 N 1.46498 * 109.46950 * 299.99717 * 12 2 1
14 14 C 1.34774 * 120.00155 * 180.02562 * 13 12 2
15 15 O 1.21593 * 119.99706 * 359.97438 * 14 13 12
16 16 C 1.47604 * 120.00590 * 180.02562 * 14 13 12
17 17 C 1.39703 * 120.04515 * 0.02562 * 16 14 13
18 18 C 1.37875 * 120.07522 * 179.97438 * 17 16 14
19 19 C 1.38778 * 119.91294 * 0.02562 * 18 17 16
20 20 C 1.39028 * 120.29130 * 359.97438 * 19 18 17
21 21 C 1.38054 * 120.21513 * 0.02562 * 20 19 18
22 22 O 1.36497 * 119.58315 * 179.97438 * 20 19 18
23 23 C 1.42715 * 115.88467 * 68.26673 * 22 20 19
24 24 C 1.52065 * 110.87111 * 275.53601 * 23 22 20
25 25 C 1.52064 * 112.29068 * 64.86073 * 24 23 22
26 26 O 1.36316 * 120.15188 * 179.97438 * 19 18 17
27 27 H 1.09010 * 109.47236 * 300.00213 * 1 2 3
28 28 H 1.08999 * 109.47509 * 59.99948 * 1 2 3
29 29 H 1.09000 * 109.47607 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46719 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46882 * 299.99599 * 3 2 1
32 32 H 1.08998 * 109.47376 * 60.00156 * 3 2 1
33 33 H 0.97007 * 119.99244 * 180.02562 * 7 6 4
34 34 H 1.09006 * 109.46838 * 180.02562 * 12 2 1
35 35 H 1.08995 * 109.47147 * 59.99829 * 12 2 1
36 36 H 0.97003 * 120.00388 * 359.97438 * 13 12 2
37 37 H 1.08000 * 119.96417 * 359.97438 * 17 16 14
38 38 H 1.08002 * 120.04485 * 180.02562 * 18 17 16
39 39 H 1.07997 * 120.19485 * 180.02562 * 21 20 19
40 40 H 1.08997 * 109.08776 * 155.22379 * 23 22 20
41 41 H 1.09000 * 109.24929 * 35.94761 * 23 22 20
42 42 H 1.09002 * 108.90269 * 304.16479 * 24 23 22
43 43 H 1.09000 * 108.90112 * 185.55465 * 24 23 22
44 44 H 1.09002 * 109.21338 * 55.54629 * 25 24 23
45 45 H 1.08998 * 109.21069 * 174.87220 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0322 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6992 -0.2394 -2.4826
7 7 0.9428 0.8297 -2.6033
8 14 2.3224 -1.1196 -4.0079
9 1 1.8279 -2.5199 -4.0080
10 1 1.8269 -0.4200 -5.2204
11 1 3.8073 -1.1192 -4.0077
12 6 2.0399 -0.7213 1.2493
13 7 1.5516 -0.0306 2.4454
14 6 1.8775 -0.4908 3.6695
15 8 2.5765 -1.4794 3.7811
16 6 1.3851 0.2047 4.8748
17 6 0.5806 1.3398 4.7477
18 6 0.1198 1.9896 5.8731
19 6 0.4567 1.5150 7.1329
20 6 1.2569 0.3859 7.2661
21 6 1.7230 -0.2714 6.1452
22 8 1.5798 -0.0680 8.5122
23 6 0.5032 -0.6106 9.2759
24 6 -0.2576 0.4903 9.9981
25 6 -0.9519 1.4396 9.0341
26 8 0.0043 2.1540 8.2488
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 3.1300 1.4424 -0.0005
31 1 1.6767 1.9563 -0.8900
32 1 1.6767 1.9564 0.8900
33 1 0.7082 1.1608 -3.4844
34 1 3.1300 -0.7209 1.2495
35 1 1.6765 -1.7489 1.2493
36 1 0.9943 0.7583 2.3564
37 1 0.3193 1.7087 3.7669
38 1 -0.5024 2.8668 5.7743
39 1 2.3443 -1.1487 6.2490
40 1 0.9036 -1.3105 10.0093
41 1 -0.1783 -1.1404 8.6104
42 1 0.4415 1.0588 10.6114
43 1 -1.0064 0.0354 10.6464
44 1 -1.6027 0.8670 8.3733
45 1 -1.5531 2.1502 9.6012
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000457984883.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:19:53
Heat of formation + Delta-G solvation = -106.589105 kcal
Electronic energy + Delta-G solvation = -26780.351026 eV
Core-core repulsion = 22955.664682 eV
Total energy + Delta-G solvation = -3824.686344 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.05658 -40.88277 -38.59041 -38.53083 -37.91831 -35.11781 -33.92815 -32.77269
-31.86740 -30.47566 -27.67814 -27.54714 -27.44574 -26.82031 -24.36436 -23.75506
-22.59212 -21.62509 -20.65852 -19.75048 -18.88070 -18.09460 -17.78652 -17.43389
-16.84919 -16.54773 -16.45135 -16.37479 -16.12633 -15.26642 -15.15834 -15.06893
-14.91245 -14.76065 -14.56389 -14.38340 -14.04472 -13.88990 -13.22900 -13.10843
-12.98669 -12.86715 -12.65822 -12.62127 -12.33586 -12.23750 -12.12332 -11.83018
-11.47653 -11.42329 -11.33759 -11.08844 -10.94834 -10.69689 -10.38888 -10.12125
-9.98399 -9.61922 -8.01370 -6.16749 -0.46711 0.05600 1.45022 1.46432
1.52710 1.59913 2.11875 2.40890 2.44377 2.51197 2.77483 3.22442
3.61930 3.67001 3.71918 3.86116 3.98645 4.12514 4.20058 4.21500
4.36502 4.37162 4.43528 4.51203 4.64344 4.71721 4.78639 4.84938
4.92793 5.01259 5.06588 5.08372 5.09086 5.12521 5.13389 5.20776
5.30068 5.36582 5.55799 5.68684 5.68829 6.05633 6.16955 6.22246
6.44228 6.44507 6.57788 6.86784 7.18973 7.50785 8.97387
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.033461 B = 0.002503 C = 0.002395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 836.594245 B =11185.519417 C =11689.493407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.052 3.948
3 C -0.123 4.123
4 C -0.530 4.530
5 H 0.044 0.956
6 C 0.030 3.970
7 N -0.898 5.898
8 Si 0.944 3.056
9 H -0.277 1.277
10 H -0.283 1.283
11 H -0.278 1.278
12 C 0.146 3.854
13 N -0.700 5.700
14 C 0.550 3.450
15 O -0.586 6.586
16 C -0.133 4.133
17 C -0.067 4.067
18 C -0.114 4.114
19 C 0.089 3.911
20 C 0.049 3.951
21 C -0.070 4.070
22 O -0.338 6.338
23 C 0.045 3.955
24 C -0.183 4.183
25 C 0.049 3.951
26 O -0.334 6.334
27 H 0.039 0.961
28 H 0.064 0.936
29 H 0.019 0.981
30 H 0.018 0.982
31 H 0.064 0.936
32 H 0.039 0.961
33 H 0.261 0.739
34 H 0.041 0.959
35 H 0.042 0.958
36 H 0.410 0.590
37 H 0.158 0.842
38 H 0.172 0.828
39 H 0.133 0.867
40 H 0.123 0.877
41 H 0.061 0.939
42 H 0.076 0.924
43 H 0.124 0.876
44 H 0.066 0.934
45 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.234 3.941 23.768 25.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.051 3.949
3 C -0.181 4.181
4 C -0.568 4.568
5 H 0.063 0.937
6 C -0.170 4.170
7 N -0.537 5.537
8 Si 0.771 3.229
9 H -0.203 1.203
10 H -0.208 1.208
11 H -0.204 1.204
12 C 0.022 3.978
13 N -0.351 5.351
14 C 0.338 3.662
15 O -0.469 6.469
16 C -0.137 4.137
17 C -0.086 4.086
18 C -0.132 4.132
19 C 0.044 3.956
20 C 0.005 3.995
21 C -0.089 4.089
22 O -0.255 6.255
23 C -0.029 4.029
24 C -0.220 4.220
25 C -0.024 4.024
26 O -0.251 6.251
27 H 0.058 0.942
28 H 0.083 0.917
29 H 0.038 0.962
30 H 0.037 0.963
31 H 0.083 0.917
32 H 0.057 0.943
33 H 0.070 0.930
34 H 0.059 0.941
35 H 0.061 0.939
36 H 0.248 0.752
37 H 0.176 0.824
38 H 0.189 0.811
39 H 0.151 0.849
40 H 0.140 0.860
41 H 0.080 0.920
42 H 0.095 0.905
43 H 0.142 0.858
44 H 0.085 0.915
45 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -7.620 3.544 23.828 25.266
hybrid contribution 0.271 -0.617 -1.180 1.359
sum -7.349 2.927 22.647 23.989
Atomic orbital electron populations
1.21694 0.96931 0.98820 1.00581 1.18354 0.93399 0.93025 0.90076
1.21704 0.98013 0.97831 1.00579 1.21239 1.31804 1.12226 0.91568
0.93746 1.25424 0.95147 0.95592 1.00872 1.69892 1.36875 1.23217
1.23673 0.85842 0.78590 0.78833 0.79679 1.20303 1.20805 1.20376
1.21368 0.97244 0.95266 0.83878 1.46022 1.52312 1.31820 1.04992
1.18544 0.79933 0.83699 0.84042 1.90735 1.40392 1.28268 1.87467
1.19756 1.03003 0.98750 0.92148 1.21493 0.94137 0.92488 1.00474
1.21298 1.00924 1.01966 0.89017 1.19555 0.95737 0.92095 0.88230
1.19034 1.00001 0.94843 0.85592 1.21096 0.98772 0.99119 0.89957
1.86336 1.35989 1.79257 1.23956 1.22968 0.89026 0.95820 0.95041
1.22474 1.01783 0.97849 0.99903 1.23005 0.89297 0.96845 0.93283
1.86289 1.60483 1.43270 1.35027 0.94230 0.91717 0.96229 0.96324
0.91695 0.94253 0.92992 0.94082 0.93919 0.75160 0.82417 0.81065
0.84916 0.85956 0.92019 0.90494 0.85827 0.91533 0.85096
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16
2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16
3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16
4 C -0.53 -27.77 8.01 25.60 0.21 -27.57 16
5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16
6 C 0.03 1.54 5.15 84.65 0.44 1.98 16
7 N -0.90 -47.22 9.35 21.45 0.20 -47.02 16
8 Si 0.94 42.34 29.54 68.60 2.03 44.36 16
9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
12 C 0.15 6.19 4.50 86.38 0.39 6.57 16
13 N -0.70 -24.25 4.91 -466.19 -2.29 -26.53 16
14 C 0.55 19.58 7.76 86.72 0.67 20.26 16
15 O -0.59 -25.54 16.34 -4.01 -0.07 -25.61 16
16 C -0.13 -3.77 5.88 -20.07 -0.12 -3.88 16
17 C -0.07 -1.43 9.53 22.54 0.21 -1.22 16
18 C -0.11 -2.13 9.98 22.31 0.22 -1.91 16
19 C 0.09 1.94 5.74 22.59 0.13 2.07 16
20 C 0.05 1.24 5.72 22.42 0.13 1.37 16
21 C -0.07 -1.97 9.54 22.61 0.22 -1.76 16
22 O -0.34 -8.10 10.16 -84.52 -0.86 -8.96 16
23 C 0.05 0.67 6.49 71.67 0.47 1.13 16
24 C -0.18 -1.86 5.93 29.98 0.18 -1.69 16
25 C 0.05 0.58 6.51 71.67 0.47 1.04 16
26 O -0.33 -6.59 10.15 -82.42 -0.84 -7.43 16
27 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16
28 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16
29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16
31 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16
32 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16
33 H 0.26 13.24 8.31 -92.70 -0.77 12.47 16
34 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16
35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16
36 H 0.41 11.93 4.18 -92.71 -0.39 11.55 16
37 H 0.16 2.69 6.38 -2.91 -0.02 2.67 16
38 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16
39 H 0.13 4.04 7.65 -2.91 -0.02 4.02 16
40 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16
41 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16
42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
43 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16
44 H 0.07 0.70 7.93 -2.39 -0.02 0.68 16
45 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16
Total: -1.00 -66.07 358.36 3.54 -62.53
By element:
Atomic # 1 Polarization: 18.78 SS G_CDS: 0.62 Total: 19.40 kcal
Atomic # 6 Polarization: -15.49 SS G_CDS: 4.74 Total: -10.75 kcal
Atomic # 7 Polarization: -71.46 SS G_CDS: -2.09 Total: -73.55 kcal
Atomic # 8 Polarization: -40.24 SS G_CDS: -1.76 Total: -42.00 kcal
Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal
Total: -66.07 3.54 -62.53 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457984883.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.057 kcal
(2) G-P(sol) polarization free energy of solvation -66.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds