Wall clock time and date at job start Tue Mar 31 2020 13:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.53006 * 109.47190 * 119.99314 * 2 1 3 5 5 H 1.08994 * 109.47567 * 298.15003 * 4 2 1 6 6 N 1.46504 * 109.46735 * 58.14454 * 4 2 1 7 7 S 1.65595 * 120.00027 * 236.61237 * 6 4 2 8 8 O 1.42104 * 104.27870 * 181.36386 * 7 6 4 9 9 O 1.42103 * 104.27881 * 309.21852 * 7 6 4 10 10 C 1.81401 * 104.44976 * 65.29076 * 7 6 4 11 11 C 1.53003 * 109.47103 * 184.36173 * 10 7 6 12 12 C 1.50703 * 109.47092 * 180.02562 * 11 10 7 13 13 H 1.07998 * 119.99792 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99977 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99895 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00006 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47462 * 89.99991 * 16 14 12 18 18 H 1.48505 * 109.47333 * 209.99851 * 16 14 12 19 19 H 1.48502 * 109.47283 * 329.99470 * 16 14 12 20 20 C 1.52998 * 109.47308 * 178.14250 * 4 2 1 21 21 C 1.53007 * 112.90565 * 311.25793 * 20 4 2 22 22 O 1.42901 * 109.46925 * 178.41553 * 21 20 4 23 23 C 1.53775 * 113.61739 * 180.02562 * 20 4 2 24 24 C 1.53784 * 87.07994 * 270.88703 * 23 20 4 25 25 C 1.53781 * 87.07987 * 334.56284 * 24 23 20 26 26 H 1.09003 * 109.47732 * 304.16975 * 1 2 3 27 27 H 1.08993 * 109.47232 * 64.17728 * 1 2 3 28 28 H 1.09003 * 109.46899 * 184.17227 * 1 2 3 29 29 H 1.08990 * 109.47551 * 239.99756 * 2 1 3 30 30 H 1.08994 * 109.47226 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47045 * 299.99943 * 3 2 1 32 32 H 1.09003 * 109.47110 * 59.99258 * 3 2 1 33 33 H 0.97006 * 120.00116 * 56.61081 * 6 4 2 34 34 H 1.08997 * 109.47079 * 304.36354 * 10 7 6 35 35 H 1.09000 * 109.47264 * 64.36361 * 10 7 6 36 36 H 1.09006 * 109.47044 * 299.99982 * 11 10 7 37 37 H 1.09000 * 109.46907 * 59.99969 * 11 10 7 38 38 H 0.96998 * 119.99910 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.46850 * 298.41029 * 21 20 4 40 40 H 1.08997 * 109.46933 * 58.41341 * 21 20 4 41 41 H 0.96694 * 114.00068 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61459 * 25.42783 * 23 20 4 43 43 H 1.08999 * 113.61822 * 156.33826 * 23 20 4 44 44 H 1.08999 * 113.61562 * 89.11555 * 24 23 20 45 45 H 1.09006 * 113.61422 * 220.01921 * 24 23 20 46 46 H 1.09000 * 113.61782 * 270.88657 * 25 24 23 47 47 H 1.09008 * 113.61381 * 139.98024 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.7041 -0.1885 2.1390 6 7 1.5154 -2.0888 1.2720 7 16 0.6390 -2.6180 2.5735 8 8 0.3326 -3.9705 2.2632 9 8 1.4453 -2.2887 3.6964 10 6 -0.8643 -1.6031 2.5498 11 6 -1.7167 -1.9252 3.7789 12 6 -2.9659 -1.0825 3.7588 13 1 -3.1348 -0.3865 2.9505 14 6 -3.8931 -1.2001 4.7724 15 7 -4.9831 -0.4643 4.7551 16 14 -3.6006 -2.4034 6.1709 17 1 -2.8607 -1.7223 7.2635 18 1 -4.9055 -2.8908 6.6857 19 1 -2.8032 -3.5540 5.6753 20 6 3.5693 -0.7618 1.2262 21 6 4.1320 -1.2446 -0.1122 22 8 5.5600 -1.2190 -0.0655 23 6 4.1852 -1.4698 2.4444 24 6 4.1790 -0.1005 3.1445 25 6 4.2277 0.5287 1.7421 26 1 -0.3635 0.5772 0.8503 27 1 -0.3633 0.4476 -0.9250 28 1 -0.3633 -1.0250 0.0748 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6815 -2.6845 0.5246 34 1 -0.5907 -0.5481 2.5637 35 1 -1.4341 -1.8188 1.6459 36 1 -1.9903 -2.9803 3.7650 37 1 -1.1469 -1.7095 4.6828 38 1 -5.6352 -0.5468 5.4684 39 1 3.7929 -2.2628 -0.3027 40 1 3.7827 -0.5898 -0.9105 41 1 5.9856 -1.5128 -0.8825 42 1 3.5210 -2.1997 2.9072 43 1 5.1856 -1.8622 2.2618 44 1 3.2562 0.1091 3.6854 45 1 5.0723 0.0897 3.7396 46 1 5.2396 0.6825 1.3674 47 1 3.5977 1.4121 1.6378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490093996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:42 Heat of formation + Delta-G solvation = -115.518261 kcal Electronic energy + Delta-G solvation = -27372.349454 eV Core-core repulsion = 23682.719865 eV Total energy + Delta-G solvation = -3689.629589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60064 -36.77363 -36.57155 -35.80550 -35.56875 -33.98844 -33.01964 -31.51184 -28.95668 -27.30718 -25.99259 -25.56557 -25.20403 -22.66183 -21.35305 -20.34953 -19.10932 -18.65396 -17.60506 -17.50875 -16.80835 -16.39789 -15.58688 -15.49816 -15.28997 -15.02635 -14.85270 -14.34772 -13.98072 -13.67988 -13.61953 -12.90928 -12.83370 -12.73007 -12.52036 -12.35241 -12.03704 -11.95287 -11.79373 -11.76920 -11.62899 -11.59104 -11.42747 -11.26846 -11.23128 -10.92842 -10.86264 -10.45024 -10.42646 -10.31124 -10.14326 -10.05684 -9.83533 -9.68072 -9.43995 -9.12580 -8.67115 -6.17559 -4.18692 0.64956 2.98324 3.25857 3.33317 3.37439 3.97076 4.10706 4.29125 4.35030 4.41922 4.61834 4.71581 4.82224 4.87240 4.96852 5.04435 5.09315 5.14442 5.23804 5.32958 5.35185 5.46438 5.49215 5.57637 5.61797 5.68175 5.77922 5.80939 5.84449 5.93603 5.94181 6.03532 6.05758 6.17670 6.23033 6.34704 6.36127 6.42785 6.60181 6.80649 6.91005 7.03186 7.41629 7.53750 8.35496 8.83619 9.42369 10.94789 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.004163 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.285794 B = 6723.879374 C = 7149.942281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.158 4.158 4 C 0.183 3.817 5 H 0.097 0.903 6 N -1.117 6.117 7 S 2.584 3.416 8 O -0.969 6.969 9 O -0.958 6.958 10 C -0.586 4.586 11 C -0.006 4.006 12 C -0.518 4.518 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.868 3.132 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.263 1.263 20 C -0.091 4.091 21 C 0.090 3.910 22 O -0.568 6.568 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.375 0.625 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.714 1.798 -12.510 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.126 4.126 3 C -0.215 4.215 4 C 0.075 3.925 5 H 0.115 0.885 6 N -0.872 5.872 7 S 2.681 3.319 8 O -0.959 6.959 9 O -0.948 6.948 10 C -0.719 4.719 11 C -0.045 4.045 12 C -0.557 4.557 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.093 4.093 21 C 0.012 3.988 22 O -0.373 6.373 23 C -0.167 4.167 24 C -0.180 4.180 25 C -0.168 4.168 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.222 0.778 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.677 1.458 -11.044 21.747 hybrid contribution -0.293 -0.564 -0.536 0.831 sum 18.384 0.894 -11.580 21.745 Atomic orbital electron populations 1.22085 0.94272 1.02634 1.02744 1.21535 0.96668 0.96536 0.97886 1.22131 1.01893 0.95255 1.02261 1.20558 0.90818 0.81712 0.99396 0.88462 1.55782 1.70466 1.21649 1.39264 1.05774 0.77017 0.75481 0.73604 1.93561 1.85694 1.33032 1.83656 1.93557 1.65861 1.85102 1.50235 1.30468 1.17211 1.14428 1.09746 1.19404 0.96380 0.98523 0.90224 1.20832 1.01784 1.22879 1.10192 0.90380 1.24974 0.94801 0.95446 0.97829 1.69878 1.09975 1.39841 1.33644 0.86942 0.78203 0.82384 0.83012 1.19654 1.20775 1.18695 1.22119 0.93977 0.98959 0.94278 1.21995 0.80668 0.99168 0.96921 1.86458 1.19257 1.90231 1.41381 1.22958 1.01283 0.97553 0.94877 1.22819 1.02199 0.96839 0.96133 1.23168 1.01315 0.95922 0.96425 0.91635 0.92264 0.92071 0.90572 0.91232 0.92509 0.92055 0.75512 0.85630 0.85396 0.95208 0.95256 0.92391 0.93761 0.93188 0.77834 0.89998 0.89910 0.89746 0.91898 0.89285 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.05 37.16 0.30 -1.34 16 2 C -0.11 -0.95 2.17 -90.62 -0.20 -1.14 16 3 C -0.16 -1.28 7.66 37.16 0.28 -1.00 16 4 C 0.18 1.97 1.30 -67.93 -0.09 1.89 16 5 H 0.10 1.14 6.77 -51.93 -0.35 0.79 16 6 N -1.12 -13.18 3.78 -4.89 -0.02 -13.20 16 7 S 2.58 42.56 5.30 -107.50 -0.57 41.99 16 8 O -0.97 -18.79 18.08 -57.54 -1.04 -19.83 16 9 O -0.96 -17.87 15.66 -57.54 -0.90 -18.77 16 10 C -0.59 -10.37 4.59 37.16 0.17 -10.20 16 11 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 12 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 13 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 16 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 20 C -0.09 -0.95 0.37 -153.70 -0.06 -1.01 16 21 C 0.09 0.77 5.90 37.16 0.22 0.99 16 22 O -0.57 -4.89 11.71 -35.23 -0.41 -5.30 16 23 C -0.13 -1.65 6.99 -25.92 -0.18 -1.83 16 24 C -0.14 -1.71 7.73 -25.92 -0.20 -1.91 16 25 C -0.13 -1.32 5.79 -25.92 -0.15 -1.47 16 26 H 0.06 0.73 7.08 -51.93 -0.37 0.37 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.64 5.81 -51.93 -0.30 0.34 16 29 H 0.08 0.59 6.45 -51.93 -0.33 0.25 16 30 H 0.07 0.53 5.03 -51.93 -0.26 0.27 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 33 H 0.41 4.00 8.57 -34.47 -0.30 3.71 16 34 H 0.13 1.99 6.66 -51.93 -0.35 1.65 16 35 H 0.13 2.08 7.24 -51.92 -0.38 1.70 16 36 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 37 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.04 0.36 7.79 -51.93 -0.40 -0.04 16 40 H 0.05 0.36 6.17 -51.93 -0.32 0.04 16 41 H 0.38 1.62 9.12 45.56 0.42 2.03 16 42 H 0.08 1.22 5.57 -51.93 -0.29 0.93 16 43 H 0.08 1.05 7.41 -51.93 -0.38 0.66 16 44 H 0.08 1.10 7.65 -51.93 -0.40 0.70 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.91 7.29 -51.93 -0.38 0.53 16 47 H 0.07 0.69 5.42 -51.92 -0.28 0.40 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -34.33 359.89 -8.57 -42.90 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.71 Total: 5.95 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: -0.44 Total: -29.84 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.76 Total: -39.23 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.35 Total: -43.90 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 42.56 SS G_CDS: -0.57 Total: 41.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.33 -8.57 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490093996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.619 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds