Wall clock time and date at job start Tue Mar 31 2020 13:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.53006 * 109.47190 * 119.99314 * 2 1 3 5 5 H 1.08994 * 109.47567 * 298.15003 * 4 2 1 6 6 N 1.46504 * 109.46735 * 58.14454 * 4 2 1 7 7 S 1.65595 * 120.00027 * 236.61237 * 6 4 2 8 8 O 1.42104 * 104.27870 * 181.36386 * 7 6 4 9 9 O 1.42103 * 104.27881 * 309.21852 * 7 6 4 10 10 C 1.81401 * 104.44976 * 65.29076 * 7 6 4 11 11 C 1.53003 * 109.47103 * 184.36173 * 10 7 6 12 12 C 1.50703 * 109.47092 * 180.02562 * 11 10 7 13 13 H 1.07998 * 119.99792 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99977 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99895 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00006 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47462 * 89.99991 * 16 14 12 18 18 H 1.48505 * 109.47333 * 209.99851 * 16 14 12 19 19 H 1.48502 * 109.47283 * 329.99470 * 16 14 12 20 20 C 1.52998 * 109.47308 * 178.14250 * 4 2 1 21 21 C 1.53007 * 112.90565 * 311.25793 * 20 4 2 22 22 O 1.42901 * 109.46925 * 178.41553 * 21 20 4 23 23 C 1.53775 * 113.61739 * 180.02562 * 20 4 2 24 24 C 1.53784 * 87.07994 * 270.88703 * 23 20 4 25 25 C 1.53781 * 87.07987 * 334.56284 * 24 23 20 26 26 H 1.09003 * 109.47732 * 304.16975 * 1 2 3 27 27 H 1.08993 * 109.47232 * 64.17728 * 1 2 3 28 28 H 1.09003 * 109.46899 * 184.17227 * 1 2 3 29 29 H 1.08990 * 109.47551 * 239.99756 * 2 1 3 30 30 H 1.08994 * 109.47226 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47045 * 299.99943 * 3 2 1 32 32 H 1.09003 * 109.47110 * 59.99258 * 3 2 1 33 33 H 0.97006 * 120.00116 * 56.61081 * 6 4 2 34 34 H 1.08997 * 109.47079 * 304.36354 * 10 7 6 35 35 H 1.09000 * 109.47264 * 64.36361 * 10 7 6 36 36 H 1.09006 * 109.47044 * 299.99982 * 11 10 7 37 37 H 1.09000 * 109.46907 * 59.99969 * 11 10 7 38 38 H 0.96998 * 119.99910 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.46850 * 298.41029 * 21 20 4 40 40 H 1.08997 * 109.46933 * 58.41341 * 21 20 4 41 41 H 0.96694 * 114.00068 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61459 * 25.42783 * 23 20 4 43 43 H 1.08999 * 113.61822 * 156.33826 * 23 20 4 44 44 H 1.08999 * 113.61562 * 89.11555 * 24 23 20 45 45 H 1.09006 * 113.61422 * 220.01921 * 24 23 20 46 46 H 1.09000 * 113.61782 * 270.88657 * 25 24 23 47 47 H 1.09008 * 113.61381 * 139.98024 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.7041 -0.1885 2.1390 6 7 1.5154 -2.0888 1.2720 7 16 0.6390 -2.6180 2.5735 8 8 0.3326 -3.9705 2.2632 9 8 1.4453 -2.2887 3.6964 10 6 -0.8643 -1.6031 2.5498 11 6 -1.7167 -1.9252 3.7789 12 6 -2.9659 -1.0825 3.7588 13 1 -3.1348 -0.3865 2.9505 14 6 -3.8931 -1.2001 4.7724 15 7 -4.9831 -0.4643 4.7551 16 14 -3.6006 -2.4034 6.1709 17 1 -2.8607 -1.7223 7.2635 18 1 -4.9055 -2.8908 6.6857 19 1 -2.8032 -3.5540 5.6753 20 6 3.5693 -0.7618 1.2262 21 6 4.1320 -1.2446 -0.1122 22 8 5.5600 -1.2190 -0.0655 23 6 4.1852 -1.4698 2.4444 24 6 4.1790 -0.1005 3.1445 25 6 4.2277 0.5287 1.7421 26 1 -0.3635 0.5772 0.8503 27 1 -0.3633 0.4476 -0.9250 28 1 -0.3633 -1.0250 0.0748 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6815 -2.6845 0.5246 34 1 -0.5907 -0.5481 2.5637 35 1 -1.4341 -1.8188 1.6459 36 1 -1.9903 -2.9803 3.7650 37 1 -1.1469 -1.7095 4.6828 38 1 -5.6352 -0.5468 5.4684 39 1 3.7929 -2.2628 -0.3027 40 1 3.7827 -0.5898 -0.9105 41 1 5.9856 -1.5128 -0.8825 42 1 3.5210 -2.1997 2.9072 43 1 5.1856 -1.8622 2.2618 44 1 3.2562 0.1091 3.6854 45 1 5.0723 0.0897 3.7396 46 1 5.2396 0.6825 1.3674 47 1 3.5977 1.4121 1.6378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490093996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:41 Heat of formation + Delta-G solvation = -142.327508 kcal Electronic energy + Delta-G solvation = -27373.511990 eV Core-core repulsion = 23682.719865 eV Total energy + Delta-G solvation = -3690.792126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44302 -38.15588 -37.36823 -37.03357 -36.56554 -35.89260 -33.97322 -33.45749 -29.77573 -28.17657 -27.71904 -26.39895 -26.10250 -23.53368 -23.14426 -21.17820 -20.40736 -19.56530 -19.35713 -18.33430 -18.17009 -17.46774 -17.02197 -16.50000 -16.32255 -16.18763 -16.04238 -15.63607 -15.24184 -14.91186 -14.72929 -14.48886 -13.84131 -13.77456 -13.60732 -13.33261 -13.29954 -13.17102 -13.08716 -13.02517 -12.93135 -12.82594 -12.63513 -12.52686 -12.33034 -12.20503 -11.97398 -11.83476 -11.69801 -11.65071 -11.32631 -11.20328 -11.06568 -10.83785 -10.81681 -10.55001 -10.17764 -8.35885 -6.40806 -0.71862 1.31141 1.33428 1.42753 1.77658 2.29346 2.74594 2.98281 3.21873 3.35715 3.45501 3.65162 3.86005 3.90841 4.00792 4.04110 4.13001 4.13669 4.20918 4.32978 4.53755 4.56221 4.65177 4.67792 4.75596 4.83714 4.91656 4.93846 5.01415 5.05026 5.06363 5.09801 5.12282 5.15007 5.17473 5.28433 5.36543 5.47630 5.50583 5.51453 5.60544 5.67794 6.13382 6.18095 6.65214 7.02741 7.23434 8.79555 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.004163 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.285794 B = 6723.879374 C = 7149.942281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.158 4.158 4 C 0.176 3.824 5 H 0.086 0.914 6 N -1.098 6.098 7 S 2.612 3.388 8 O -0.996 6.996 9 O -0.979 6.979 10 C -0.590 4.590 11 C -0.015 4.015 12 C -0.522 4.522 13 H 0.052 0.948 14 C 0.016 3.984 15 N -0.939 5.939 16 Si 0.921 3.079 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.252 1.252 20 C -0.085 4.085 21 C 0.091 3.909 22 O -0.584 6.584 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.118 4.118 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.425 0.575 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.027 0.973 37 H 0.031 0.969 38 H 0.269 0.731 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.395 0.605 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.553 1.670 -14.007 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.117 4.117 3 C -0.216 4.216 4 C 0.069 3.931 5 H 0.104 0.896 6 N -0.857 5.857 7 S 2.708 3.292 8 O -0.986 6.986 9 O -0.969 6.969 10 C -0.721 4.721 11 C -0.054 4.054 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.183 4.183 15 N -0.579 5.579 16 Si 0.744 3.256 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.175 1.175 20 C -0.087 4.087 21 C 0.013 3.987 22 O -0.392 6.392 23 C -0.176 4.176 24 C -0.189 4.189 25 C -0.156 4.156 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.244 0.756 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.520 1.321 -12.561 24.096 hybrid contribution -0.803 -0.467 -0.141 0.940 sum 19.717 0.854 -12.702 23.470 Atomic orbital electron populations 1.22147 0.95353 1.02192 1.02741 1.21502 0.95630 0.97133 0.97475 1.22141 1.02410 0.94467 1.02537 1.20766 0.91352 0.80786 1.00210 0.89618 1.55303 1.69197 1.22622 1.38606 1.04701 0.76303 0.74341 0.73862 1.93520 1.86126 1.34726 1.84274 1.93537 1.66024 1.85228 1.52070 1.30467 1.17814 1.16035 1.07827 1.19354 0.95605 0.97512 0.92942 1.21145 1.03325 1.22530 1.09120 0.92961 1.25814 0.94658 0.97264 1.00556 1.70000 1.11151 1.41822 1.34906 0.86086 0.78662 0.80641 0.80210 1.18608 1.19957 1.17548 1.22047 0.93369 0.98563 0.94762 1.21977 0.80926 0.99841 0.95912 1.86406 1.19188 1.90467 1.43159 1.22965 1.00940 0.97238 0.96430 1.22850 1.01609 0.97102 0.97334 1.23103 1.01743 0.96134 0.94594 0.93160 0.91081 0.92517 0.88370 0.90368 0.91349 0.92794 0.73797 0.84158 0.84095 0.95433 0.95082 0.92176 0.93283 0.91096 0.75602 0.92444 0.89971 0.91231 0.91624 0.88820 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.05 71.98 0.58 -2.53 16 2 C -0.10 -1.46 2.17 -10.79 -0.02 -1.49 16 3 C -0.16 -2.10 7.66 71.98 0.55 -1.55 16 4 C 0.18 3.47 1.30 44.99 0.06 3.53 16 5 H 0.09 1.92 6.77 -2.39 -0.02 1.91 16 6 N -1.10 -24.12 3.78 -169.38 -0.64 -24.76 16 7 S 2.61 84.09 5.30 -56.49 -0.30 83.79 16 8 O -1.00 -37.75 18.08 -127.65 -2.31 -40.06 16 9 O -0.98 -36.30 15.66 -127.65 -2.00 -38.30 16 10 C -0.59 -20.67 4.59 71.98 0.33 -20.34 16 11 C -0.02 -0.70 4.05 29.85 0.12 -0.58 16 12 C -0.52 -29.08 9.66 25.60 0.25 -28.83 16 13 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 14 C 0.02 0.90 5.47 84.65 0.46 1.37 16 15 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 16 Si 0.92 43.86 27.47 68.60 1.88 45.74 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 20 C -0.09 -1.60 0.37 -51.66 -0.02 -1.62 16 21 C 0.09 1.26 5.90 71.98 0.42 1.68 16 22 O -0.58 -8.25 11.71 -148.98 -1.74 -9.99 16 23 C -0.14 -3.40 6.99 31.12 0.22 -3.18 16 24 C -0.15 -3.54 7.73 31.12 0.24 -3.30 16 25 C -0.12 -2.14 5.79 31.12 0.18 -1.96 16 26 H 0.05 1.08 7.08 -2.39 -0.02 1.06 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.08 5.81 -2.39 -0.01 1.07 16 29 H 0.10 1.09 6.45 -2.39 -0.02 1.08 16 30 H 0.08 0.91 5.03 -2.39 -0.01 0.90 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.81 7.94 -2.39 -0.02 0.79 16 33 H 0.43 7.26 8.57 -96.74 -0.83 6.43 16 34 H 0.14 4.43 6.66 -2.39 -0.02 4.41 16 35 H 0.14 4.50 7.24 -2.39 -0.02 4.48 16 36 H 0.03 1.28 7.20 -2.38 -0.02 1.26 16 37 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.05 0.64 7.79 -2.39 -0.02 0.62 16 40 H 0.07 0.70 6.17 -2.39 -0.01 0.69 16 41 H 0.39 2.10 9.12 -74.06 -0.68 1.43 16 42 H 0.06 1.69 5.57 -2.39 -0.01 1.68 16 43 H 0.08 2.00 7.41 -2.39 -0.02 1.98 16 44 H 0.07 1.82 7.65 -2.39 -0.02 1.80 16 45 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.09 1.67 7.29 -2.39 -0.02 1.65 16 47 H 0.09 1.38 5.42 -2.38 -0.01 1.37 16 Total: -1.00 -74.39 359.89 -2.00 -76.39 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.57 Total: 23.00 kcal Atomic # 6 Polarization: -62.17 SS G_CDS: 3.37 Total: -58.80 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -0.34 Total: -81.77 kcal Atomic # 8 Polarization: -82.29 SS G_CDS: -6.05 Total: -88.35 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 16 Polarization: 84.09 SS G_CDS: -0.30 Total: 83.79 kcal Total: -74.39 -2.00 -76.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490093996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.938 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds