Wall clock time and date at job start Tue Mar 31 2020 13:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46904 * 2 1 4 4 C 1.52993 * 109.47165 * 120.00142 * 2 1 3 5 5 H 1.09008 * 109.47039 * 305.40622 * 4 2 1 6 6 N 1.46500 * 109.47157 * 185.40728 * 4 2 1 7 7 S 1.65600 * 119.99851 * 113.97373 * 6 4 2 8 8 O 1.42098 * 104.27611 * 181.40512 * 7 6 4 9 9 O 1.42093 * 104.27848 * 309.26266 * 7 6 4 10 10 C 1.81403 * 104.45141 * 65.33768 * 7 6 4 11 11 C 1.52999 * 109.47306 * 179.97438 * 10 7 6 12 12 C 1.50698 * 109.47091 * 180.02562 * 11 10 7 13 13 H 1.08007 * 120.00204 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99904 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00102 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47102 * 59.99816 * 16 14 12 18 18 H 1.48498 * 109.47150 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47427 * 300.00101 * 16 14 12 20 20 C 1.52999 * 109.47223 * 65.40326 * 4 2 1 21 21 C 1.52997 * 112.84867 * 48.80771 * 20 4 2 22 22 O 1.42898 * 109.47530 * 179.97438 * 21 20 4 23 23 C 1.53782 * 113.61760 * 277.49670 * 20 4 2 24 24 C 1.53778 * 87.08370 * 220.01595 * 23 20 4 25 25 C 1.53782 * 113.61386 * 179.97438 * 20 4 2 26 26 H 1.09000 * 109.47341 * 300.00129 * 1 2 3 27 27 H 1.09002 * 109.47002 * 60.00067 * 1 2 3 28 28 H 1.09002 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46659 * 240.00150 * 2 1 3 30 30 H 1.09003 * 109.46765 * 175.42022 * 3 2 1 31 31 H 1.09005 * 109.47224 * 295.41651 * 3 2 1 32 32 H 1.08999 * 109.47363 * 55.41637 * 3 2 1 33 33 H 0.97000 * 119.99627 * 293.97112 * 6 4 2 34 34 H 1.08999 * 109.46951 * 299.99897 * 10 7 6 35 35 H 1.09008 * 109.47160 * 59.99456 * 10 7 6 36 36 H 1.08999 * 109.47163 * 299.99929 * 11 10 7 37 37 H 1.09000 * 109.47176 * 60.00015 * 11 10 7 38 38 H 0.96998 * 120.00477 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47161 * 299.99990 * 21 20 4 40 40 H 1.09005 * 109.47398 * 59.99810 * 21 20 4 41 41 H 0.96697 * 114.00437 * 179.97438 * 22 21 20 42 42 H 1.08994 * 113.61251 * 334.56967 * 23 20 4 43 43 H 1.09000 * 113.61041 * 105.47128 * 23 20 4 44 44 H 1.08994 * 113.61563 * 270.88632 * 24 23 20 45 45 H 1.09007 * 113.61411 * 139.97861 * 24 23 20 46 46 H 1.09002 * 113.61729 * 254.53165 * 25 20 4 47 47 H 1.09004 * 113.61419 * 25.35664 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5998 -0.2663 2.1366 6 7 3.4992 -0.6095 1.3160 7 16 4.2083 0.2557 2.5370 8 8 5.6001 0.1726 2.2629 9 8 3.5316 1.5051 2.5199 10 6 3.8000 -0.6689 4.0434 11 6 4.4072 0.0386 5.2565 12 6 4.0685 -0.7299 6.5077 13 1 3.4787 -1.6325 6.4442 14 6 4.5107 -0.2803 7.7339 15 7 5.2284 0.8190 7.8113 16 14 4.0903 -1.2324 9.2850 17 1 4.6424 -2.6075 9.1867 18 1 4.6798 -0.5458 10.4624 19 1 2.6148 -1.3014 9.4389 20 6 1.6440 -2.1976 1.1831 21 6 1.9864 -2.8450 -0.1602 22 8 1.5881 -4.2173 -0.1430 23 6 0.2051 -2.4711 1.6519 24 6 0.7525 -3.7331 2.3393 25 6 2.1122 -3.0160 2.3980 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1269 1.4435 0.0821 31 1 1.7452 1.9321 -0.9282 32 1 1.6111 1.9795 0.8461 33 1 4.0500 -1.0425 0.6451 34 1 2.7171 -0.7195 4.1563 35 1 4.2053 -1.6783 3.9713 36 1 5.4902 0.0888 5.1433 37 1 4.0023 1.0480 5.3288 38 1 5.5392 1.1356 8.6739 39 1 1.4600 -2.3235 -0.9596 40 1 3.0611 -2.7812 -0.3309 41 1 1.7749 -4.6914 -0.9648 42 1 -0.1763 -1.7248 2.3488 43 1 -0.4867 -2.6832 0.8368 44 1 0.7515 -4.6147 1.6984 45 1 0.3150 -3.9208 3.3199 46 1 2.9594 -3.6679 2.1850 47 1 2.2537 -2.4185 3.2986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490093997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:46 Heat of formation + Delta-G solvation = -120.947439 kcal Electronic energy + Delta-G solvation = -27306.294795 eV Core-core repulsion = 23616.429779 eV Total energy + Delta-G solvation = -3689.865016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55078 -36.88359 -36.38842 -35.67826 -35.36628 -33.89116 -32.92991 -31.17438 -28.84752 -27.07312 -25.78293 -25.59476 -25.24460 -22.75134 -21.63958 -20.00178 -19.00413 -18.70310 -17.83989 -17.27567 -16.47555 -16.21696 -15.68359 -15.40228 -15.21059 -14.89584 -14.78242 -14.53289 -13.92477 -13.56062 -13.37778 -12.76809 -12.67875 -12.55569 -12.31391 -12.17970 -12.12739 -11.95611 -11.70452 -11.64955 -11.56304 -11.46690 -11.27779 -11.06174 -10.98723 -10.84468 -10.79424 -10.59695 -10.39053 -10.33343 -10.29492 -10.12612 -9.90407 -9.70632 -9.33385 -8.95263 -8.49180 -6.11466 -4.16929 0.81058 3.13752 3.27932 3.32836 3.34627 3.93355 4.24279 4.31605 4.38623 4.50138 4.61550 4.74275 4.91252 4.92941 4.97852 5.02228 5.14885 5.23747 5.26664 5.37431 5.37997 5.56810 5.63917 5.68035 5.69671 5.72568 5.76928 5.85617 5.92394 5.96326 6.01181 6.04187 6.09538 6.16767 6.30670 6.41579 6.48422 6.52657 6.61034 7.11615 7.30487 7.36816 7.42070 7.81369 8.18436 8.86218 9.47811 10.99565 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.004525 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.970227 B = 6186.623082 C = 7254.836403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.146 4.146 4 C 0.177 3.823 5 H 0.095 0.905 6 N -1.119 6.119 7 S 2.589 3.411 8 O -0.970 6.970 9 O -0.961 6.961 10 C -0.592 4.592 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.094 4.094 21 C 0.100 3.900 22 O -0.563 6.563 23 C -0.121 4.121 24 C -0.136 4.136 25 C -0.134 4.134 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.372 0.628 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -7.326 -18.575 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.125 4.125 3 C -0.203 4.203 4 C 0.069 3.931 5 H 0.113 0.887 6 N -0.873 5.873 7 S 2.686 3.314 8 O -0.960 6.960 9 O -0.951 6.951 10 C -0.725 4.725 11 C -0.009 4.009 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.096 4.096 21 C 0.022 3.978 22 O -0.369 6.369 23 C -0.159 4.159 24 C -0.173 4.173 25 C -0.171 4.171 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.219 0.781 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.745 -6.112 -17.851 21.236 hybrid contribution 0.024 -1.296 0.303 1.331 sum -9.720 -7.409 -17.547 21.384 Atomic orbital electron populations 1.22012 0.94693 1.02448 1.02073 1.21504 0.96025 0.97198 0.97755 1.21850 1.01849 0.94958 1.01649 1.20767 0.79555 0.93237 0.99548 0.88723 1.55847 1.13906 1.72668 1.44916 1.05664 0.73845 0.75632 0.76248 1.93550 1.31476 1.87118 1.83869 1.93559 1.75361 1.39866 1.86267 1.30576 1.10587 1.13742 1.17620 1.18938 0.96419 0.95876 0.89660 1.20958 1.34399 1.10033 0.90504 0.92090 1.25052 0.94893 0.95101 0.99343 1.69940 1.35577 1.21804 1.25569 0.86548 0.78739 0.79965 0.82129 1.20084 1.21092 1.20079 1.22205 0.98346 0.94065 0.94945 1.21859 0.98031 0.81992 0.95902 1.86550 1.85893 1.23151 1.41258 1.22946 0.94528 0.98379 1.00020 1.22893 0.96176 0.97968 1.00313 1.23062 0.98141 0.98650 0.97238 0.92238 0.92756 0.91672 0.91029 0.92452 0.93371 0.91434 0.75708 0.86366 0.85990 0.94966 0.94891 0.92495 0.92970 0.93428 0.78104 0.90084 0.91225 0.88482 0.92228 0.91270 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.56 37.16 0.32 -1.02 16 2 C -0.10 -1.04 2.25 -90.62 -0.20 -1.24 16 3 C -0.15 -1.76 8.00 37.16 0.30 -1.46 16 4 C 0.18 1.97 1.36 -67.93 -0.09 1.88 16 5 H 0.09 1.14 7.39 -51.92 -0.38 0.76 16 6 N -1.12 -13.96 3.95 -4.89 -0.02 -13.98 16 7 S 2.59 45.40 5.21 -107.50 -0.56 44.84 16 8 O -0.97 -20.10 18.08 -57.54 -1.04 -21.14 16 9 O -0.96 -18.98 15.61 -57.54 -0.90 -19.88 16 10 C -0.59 -11.18 4.84 37.16 0.18 -11.00 16 11 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 12 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.09 -0.93 0.50 -153.70 -0.08 -1.01 16 21 C 0.10 0.82 5.81 37.16 0.22 1.04 16 22 O -0.56 -4.53 10.54 -35.23 -0.37 -4.91 16 23 C -0.12 -1.18 5.07 -25.92 -0.13 -1.31 16 24 C -0.14 -1.48 7.53 -25.89 -0.20 -1.68 16 25 C -0.13 -1.56 6.82 -25.89 -0.18 -1.74 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.51 5.11 -51.93 -0.27 0.25 16 29 H 0.07 0.61 6.26 -51.93 -0.33 0.29 16 30 H 0.06 0.77 6.53 -51.93 -0.34 0.43 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 33 H 0.41 4.30 8.24 -34.48 -0.28 4.01 16 34 H 0.12 2.00 6.92 -51.92 -0.36 1.64 16 35 H 0.12 2.11 7.87 -51.92 -0.41 1.70 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.05 0.37 6.54 -51.93 -0.34 0.03 16 40 H 0.05 0.37 7.51 -51.93 -0.39 -0.02 16 41 H 0.37 1.50 9.12 45.56 0.42 1.92 16 42 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 43 H 0.07 0.63 7.06 -51.93 -0.37 0.26 16 44 H 0.10 1.07 6.15 -51.93 -0.32 0.75 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 47 H 0.09 1.13 5.30 -51.93 -0.28 0.85 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -34.43 366.64 -9.02 -43.45 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.96 Total: 5.56 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -0.42 Total: -29.94 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.72 Total: -39.72 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.31 Total: -45.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 45.40 SS G_CDS: -0.56 Total: 44.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.43 -9.02 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490093997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.493 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds