Wall clock time and date at job start Tue Mar 31 2020 13:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46904 * 2 1 4 4 C 1.52993 * 109.47165 * 120.00142 * 2 1 3 5 5 H 1.09008 * 109.47039 * 305.40622 * 4 2 1 6 6 N 1.46500 * 109.47157 * 185.40728 * 4 2 1 7 7 S 1.65600 * 119.99851 * 113.97373 * 6 4 2 8 8 O 1.42098 * 104.27611 * 181.40512 * 7 6 4 9 9 O 1.42093 * 104.27848 * 309.26266 * 7 6 4 10 10 C 1.81403 * 104.45141 * 65.33768 * 7 6 4 11 11 C 1.52999 * 109.47306 * 179.97438 * 10 7 6 12 12 C 1.50698 * 109.47091 * 180.02562 * 11 10 7 13 13 H 1.08007 * 120.00204 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99904 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00102 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47102 * 59.99816 * 16 14 12 18 18 H 1.48498 * 109.47150 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47427 * 300.00101 * 16 14 12 20 20 C 1.52999 * 109.47223 * 65.40326 * 4 2 1 21 21 C 1.52997 * 112.84867 * 48.80771 * 20 4 2 22 22 O 1.42898 * 109.47530 * 179.97438 * 21 20 4 23 23 C 1.53782 * 113.61760 * 277.49670 * 20 4 2 24 24 C 1.53778 * 87.08370 * 220.01595 * 23 20 4 25 25 C 1.53782 * 113.61386 * 179.97438 * 20 4 2 26 26 H 1.09000 * 109.47341 * 300.00129 * 1 2 3 27 27 H 1.09002 * 109.47002 * 60.00067 * 1 2 3 28 28 H 1.09002 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46659 * 240.00150 * 2 1 3 30 30 H 1.09003 * 109.46765 * 175.42022 * 3 2 1 31 31 H 1.09005 * 109.47224 * 295.41651 * 3 2 1 32 32 H 1.08999 * 109.47363 * 55.41637 * 3 2 1 33 33 H 0.97000 * 119.99627 * 293.97112 * 6 4 2 34 34 H 1.08999 * 109.46951 * 299.99897 * 10 7 6 35 35 H 1.09008 * 109.47160 * 59.99456 * 10 7 6 36 36 H 1.08999 * 109.47163 * 299.99929 * 11 10 7 37 37 H 1.09000 * 109.47176 * 60.00015 * 11 10 7 38 38 H 0.96998 * 120.00477 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47161 * 299.99990 * 21 20 4 40 40 H 1.09005 * 109.47398 * 59.99810 * 21 20 4 41 41 H 0.96697 * 114.00437 * 179.97438 * 22 21 20 42 42 H 1.08994 * 113.61251 * 334.56967 * 23 20 4 43 43 H 1.09000 * 113.61041 * 105.47128 * 23 20 4 44 44 H 1.08994 * 113.61563 * 270.88632 * 24 23 20 45 45 H 1.09007 * 113.61411 * 139.97861 * 24 23 20 46 46 H 1.09002 * 113.61729 * 254.53165 * 25 20 4 47 47 H 1.09004 * 113.61419 * 25.35664 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5998 -0.2663 2.1366 6 7 3.4992 -0.6095 1.3160 7 16 4.2083 0.2557 2.5370 8 8 5.6001 0.1726 2.2629 9 8 3.5316 1.5051 2.5199 10 6 3.8000 -0.6689 4.0434 11 6 4.4072 0.0386 5.2565 12 6 4.0685 -0.7299 6.5077 13 1 3.4787 -1.6325 6.4442 14 6 4.5107 -0.2803 7.7339 15 7 5.2284 0.8190 7.8113 16 14 4.0903 -1.2324 9.2850 17 1 4.6424 -2.6075 9.1867 18 1 4.6798 -0.5458 10.4624 19 1 2.6148 -1.3014 9.4389 20 6 1.6440 -2.1976 1.1831 21 6 1.9864 -2.8450 -0.1602 22 8 1.5881 -4.2173 -0.1430 23 6 0.2051 -2.4711 1.6519 24 6 0.7525 -3.7331 2.3393 25 6 2.1122 -3.0160 2.3980 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1269 1.4435 0.0821 31 1 1.7452 1.9321 -0.9282 32 1 1.6111 1.9795 0.8461 33 1 4.0500 -1.0425 0.6451 34 1 2.7171 -0.7195 4.1563 35 1 4.2053 -1.6783 3.9713 36 1 5.4902 0.0888 5.1433 37 1 4.0023 1.0480 5.3288 38 1 5.5392 1.1356 8.6739 39 1 1.4600 -2.3235 -0.9596 40 1 3.0611 -2.7812 -0.3309 41 1 1.7749 -4.6914 -0.9648 42 1 -0.1763 -1.7248 2.3488 43 1 -0.4867 -2.6832 0.8368 44 1 0.7515 -4.6147 1.6984 45 1 0.3150 -3.9208 3.3199 46 1 2.9594 -3.6679 2.1850 47 1 2.2537 -2.4185 3.2986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490093997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:45 Heat of formation + Delta-G solvation = -147.214923 kcal Electronic energy + Delta-G solvation = -27307.433839 eV Core-core repulsion = 23616.429779 eV Total energy + Delta-G solvation = -3691.004060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36923 -38.20174 -37.45545 -36.95292 -36.36032 -35.88646 -33.92903 -33.14298 -29.66713 -27.88076 -27.64494 -26.41435 -26.20826 -23.80462 -23.34740 -20.86995 -20.37387 -19.61148 -18.97784 -18.52663 -18.02800 -17.41826 -17.04620 -16.56191 -16.45723 -16.11574 -15.94337 -15.62692 -15.12983 -14.83163 -14.46649 -14.33020 -13.79336 -13.62930 -13.48570 -13.26752 -13.24840 -13.11968 -13.11017 -12.91322 -12.84782 -12.75634 -12.67526 -12.44826 -12.29832 -12.21798 -12.17048 -11.81512 -11.74805 -11.65731 -11.42565 -11.08189 -11.00296 -10.90814 -10.64050 -10.56502 -10.08818 -8.25960 -6.39718 -0.66830 1.40056 1.43265 1.51408 1.84304 2.37648 2.79655 3.07487 3.26851 3.34183 3.47193 3.67439 3.85231 3.97741 4.05784 4.11591 4.13293 4.14350 4.24581 4.35571 4.55932 4.67412 4.68094 4.72170 4.78868 4.88510 4.94399 4.96301 4.99974 5.03482 5.13442 5.16862 5.24690 5.26713 5.26899 5.27743 5.33758 5.53438 5.56627 5.60579 5.67961 5.76332 6.06313 6.15799 6.73344 7.05455 7.30341 8.86153 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.004525 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.970227 B = 6186.623082 C = 7254.836403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.150 4.150 4 C 0.169 3.831 5 H 0.083 0.917 6 N -1.097 6.097 7 S 2.615 3.385 8 O -1.002 7.002 9 O -0.984 6.984 10 C -0.591 4.591 11 C 0.024 3.976 12 C -0.538 4.538 13 H 0.074 0.926 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.085 4.085 21 C 0.100 3.900 22 O -0.577 6.577 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.146 4.146 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.424 0.576 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.004 0.996 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.391 0.609 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 -9.274 -20.126 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.119 4.119 3 C -0.207 4.207 4 C 0.062 3.938 5 H 0.102 0.898 6 N -0.857 5.857 7 S 2.711 3.289 8 O -0.992 6.992 9 O -0.973 6.973 10 C -0.722 4.722 11 C -0.014 4.014 12 C -0.576 4.576 13 H 0.092 0.908 14 C -0.200 4.200 15 N -0.573 5.573 16 Si 0.795 3.205 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.086 4.086 21 C 0.023 3.977 22 O -0.385 6.385 23 C -0.154 4.154 24 C -0.172 4.172 25 C -0.183 4.183 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.260 0.740 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.241 0.759 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.499 -8.086 -19.416 23.970 hybrid contribution 0.549 -0.698 0.703 1.133 sum -10.949 -8.783 -18.713 23.393 Atomic orbital electron populations 1.22005 0.93329 1.03337 1.02336 1.21504 0.97051 0.95638 0.97711 1.21878 1.00587 0.96555 1.01688 1.21010 0.78038 0.94608 1.00123 0.89843 1.55320 1.14865 1.72198 1.43322 1.04593 0.72871 0.75251 0.76160 1.93499 1.33821 1.87580 1.84344 1.93532 1.75662 1.41464 1.86660 1.30484 1.11503 1.14104 1.16135 1.18776 0.94958 0.95320 0.92380 1.21459 1.34191 1.10514 0.91474 0.90775 1.26075 0.94643 0.96035 1.03243 1.70089 1.37013 1.23734 1.26513 0.85409 0.79038 0.78657 0.77436 1.18893 1.20904 1.18767 1.22154 0.98238 0.92724 0.95533 1.21845 0.98643 0.82386 0.94867 1.86487 1.85986 1.23062 1.42962 1.22934 0.94561 0.97593 1.00273 1.22868 0.95648 0.98479 1.00218 1.23100 0.98595 0.99087 0.97566 0.93125 0.91471 0.90415 0.88718 0.94238 0.91535 0.93618 0.73995 0.84411 0.84332 0.97810 0.97486 0.92406 0.91139 0.92913 0.75923 0.90276 0.89773 0.88290 0.92846 0.91661 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.56 71.98 0.62 -1.57 16 2 C -0.10 -1.72 2.25 -10.80 -0.02 -1.74 16 3 C -0.15 -3.43 8.00 71.98 0.58 -2.85 16 4 C 0.17 3.49 1.36 44.99 0.06 3.55 16 5 H 0.08 1.94 7.39 -2.38 -0.02 1.92 16 6 N -1.10 -26.19 3.95 -169.39 -0.67 -26.86 16 7 S 2.62 93.12 5.21 -56.49 -0.29 92.83 16 8 O -1.00 -42.31 18.08 -127.65 -2.31 -44.62 16 9 O -0.98 -39.86 15.61 -127.65 -1.99 -41.85 16 10 C -0.59 -22.65 4.84 71.98 0.35 -22.30 16 11 C 0.02 1.29 4.98 29.85 0.15 1.44 16 12 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 13 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 15 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 16 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 C -0.08 -1.48 0.50 -51.66 -0.03 -1.51 16 21 C 0.10 1.29 5.81 71.98 0.42 1.71 16 22 O -0.58 -7.35 10.54 -148.98 -1.57 -8.92 16 23 C -0.12 -1.98 5.07 31.12 0.16 -1.82 16 24 C -0.13 -2.69 7.53 31.14 0.23 -2.46 16 25 C -0.15 -3.20 6.82 31.14 0.21 -2.99 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.93 5.11 -2.39 -0.01 0.92 16 29 H 0.09 1.24 6.26 -2.39 -0.01 1.23 16 30 H 0.04 1.03 6.53 -2.39 -0.02 1.01 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.04 1.23 7.85 -2.39 -0.02 1.21 16 33 H 0.42 8.10 8.24 -96.74 -0.80 7.30 16 34 H 0.14 4.67 6.92 -2.39 -0.02 4.65 16 35 H 0.14 4.79 7.87 -2.39 -0.02 4.77 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.07 0.68 6.54 -2.39 -0.02 0.66 16 40 H 0.05 0.64 7.51 -2.38 -0.02 0.62 16 41 H 0.39 1.77 9.12 -74.06 -0.68 1.10 16 42 H 0.08 1.39 7.96 -2.39 -0.02 1.37 16 43 H 0.08 1.22 7.06 -2.39 -0.02 1.20 16 44 H 0.10 1.96 6.15 -2.39 -0.01 1.95 16 45 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 47 H 0.07 1.80 5.30 -2.39 -0.01 1.79 16 Total: -1.00 -75.92 366.64 -1.60 -77.52 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.49 Total: 23.04 kcal Atomic # 6 Polarization: -63.30 SS G_CDS: 3.42 Total: -59.88 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -0.38 Total: -83.74 kcal Atomic # 8 Polarization: -89.52 SS G_CDS: -5.87 Total: -95.39 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 93.12 SS G_CDS: -0.29 Total: 92.83 kcal Total: -75.92 -1.60 -77.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490093997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.698 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds