Wall clock time and date at job start Tue Mar 31 2020 13:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.52996 * 109.47476 * 120.00280 * 2 1 3 5 5 H 1.08997 * 109.47241 * 59.99972 * 4 2 1 6 6 O 1.42896 * 109.46872 * 300.00065 * 4 2 1 7 7 C 1.52999 * 109.47166 * 180.02562 * 4 2 1 8 8 N 1.46503 * 109.46687 * 184.99832 * 7 4 2 9 9 C 1.34778 * 119.99611 * 179.97438 * 8 7 4 10 10 O 1.21722 * 120.00354 * 359.97438 * 9 8 7 11 11 C 1.46257 * 119.99998 * 180.02562 * 9 8 7 12 12 C 1.35023 * 119.99819 * 173.21082 * 11 9 8 13 13 C 1.46954 * 120.00574 * 348.68769 * 12 11 9 14 14 C 1.40026 * 120.09627 * 316.40708 * 13 12 11 15 15 C 1.37603 * 119.89617 * 179.70113 * 14 13 12 16 16 C 1.39171 * 120.09734 * 0.58944 * 15 14 13 17 17 O 1.35571 * 119.89684 * 179.70127 * 16 15 14 18 18 C 1.34785 * 117.00169 * 174.33904 * 17 16 15 19 19 H 1.07998 * 119.99720 * 5.06283 * 18 17 16 20 20 C 1.38717 * 120.00088 * 185.05896 * 18 17 16 21 21 N 1.31510 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99990 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46973 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46965 * 120.00226 * 22 20 18 25 25 H 1.48503 * 109.46748 * 240.00154 * 22 20 18 26 26 C 1.39179 * 120.20613 * 359.68498 * 16 15 14 27 27 C 1.37589 * 120.09885 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.47598 * 299.99913 * 1 2 3 29 29 H 1.09007 * 109.47299 * 60.00002 * 1 2 3 30 30 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47069 * 240.00754 * 2 1 3 32 32 H 1.09002 * 109.47361 * 300.00517 * 3 2 1 33 33 H 1.09003 * 109.46877 * 59.99738 * 3 2 1 34 34 H 1.09000 * 109.47493 * 180.02562 * 3 2 1 35 35 H 0.96702 * 114.00532 * 299.99882 * 6 4 2 36 36 H 1.09001 * 109.47203 * 304.99368 * 7 4 2 37 37 H 1.08997 * 109.47213 * 65.00417 * 7 4 2 38 38 H 0.96995 * 120.00392 * 0.02562 * 8 7 4 39 39 H 1.08004 * 119.99793 * 353.21635 * 11 9 8 40 40 H 1.08007 * 119.99137 * 168.68362 * 12 11 9 41 41 H 1.08001 * 120.05369 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.94836 * 180.27558 * 15 14 13 43 43 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.94751 * 180.02562 * 26 16 15 45 45 H 1.08007 * 120.05212 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -1.7489 1.2491 6 8 1.5637 -0.0477 2.4159 7 6 3.5700 -0.7207 1.2494 8 7 4.0584 -1.5129 2.3808 9 6 5.3835 -1.6542 2.5825 10 8 6.1745 -1.1239 1.8243 11 6 5.8711 -2.4455 3.7116 12 6 7.1909 -2.7018 3.8365 13 6 8.1052 -2.4069 2.7245 14 6 7.7464 -2.7411 1.4129 15 6 8.6030 -2.4575 0.3740 16 6 9.8296 -1.8507 0.6267 17 8 10.6731 -1.5786 -0.3993 18 6 11.7913 -0.8860 -0.1050 19 1 12.0226 -0.6452 0.9221 20 6 12.6449 -0.4826 -1.1212 21 7 12.3630 -0.7755 -2.3719 22 14 14.1951 0.4766 -0.7133 23 1 14.2820 0.6753 0.7558 24 1 15.3835 -0.2810 -1.1811 25 1 14.1521 1.7977 -1.3903 26 6 10.1931 -1.5219 1.9294 27 6 9.3404 -1.7963 2.9737 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.8490 0.8739 2.4821 36 1 3.9337 -1.1548 0.3180 37 1 3.9330 0.3032 1.3393 38 1 3.4282 -1.9365 2.9843 39 1 5.1755 -2.8250 4.4455 40 1 7.5746 -3.1234 4.7539 41 1 6.7968 -3.2167 1.2164 42 1 8.3251 -2.7109 -0.6384 43 1 12.9597 -0.4932 -3.0826 44 1 11.1459 -1.0507 2.1206 45 1 9.6230 -1.5404 3.9843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492113191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:58 Heat of formation + Delta-G solvation = -73.479475 kcal Electronic energy + Delta-G solvation = -26106.929645 eV Core-core repulsion = 22283.679043 eV Total energy + Delta-G solvation = -3823.250602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.91689 -39.01193 -38.42804 -36.45549 -34.21292 -34.14269 -33.02111 -32.11384 -30.10359 -29.25333 -27.74864 -27.51946 -25.44128 -24.14733 -22.43001 -21.74793 -20.96027 -20.46343 -19.19033 -17.92642 -17.29993 -16.99164 -16.61938 -16.24593 -15.67340 -15.12179 -14.68175 -14.47087 -14.45687 -14.25185 -13.96109 -13.60200 -13.45740 -13.30263 -13.06343 -12.89059 -12.66283 -12.51218 -12.39424 -12.21890 -12.15374 -11.68709 -11.60514 -11.35628 -11.25118 -11.01054 -10.93884 -10.67281 -10.58979 -10.39591 -10.27514 -9.47288 -9.39034 -9.14538 -8.94358 -8.68282 -7.90518 -6.84626 -6.44943 -4.00634 1.27007 2.43974 2.71925 3.14095 3.15392 3.20511 3.28834 3.66728 3.97858 4.07142 4.34953 4.46656 4.54684 4.71266 4.85398 5.02983 5.09892 5.14548 5.24274 5.25970 5.31259 5.37046 5.48256 5.50907 5.59394 5.64443 5.71743 5.72367 5.75694 5.86511 5.94284 5.98759 6.26638 6.35144 6.45888 6.54123 6.61870 6.80625 7.05247 7.14107 7.25375 7.37997 7.46955 7.51781 7.71073 7.93865 8.02080 8.57359 9.00954 9.73178 10.73086 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.002672 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.757241 B =10474.599053 C =11739.366831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.159 4.159 4 C 0.101 3.899 5 H 0.104 0.896 6 O -0.558 6.558 7 C 0.088 3.912 8 N -0.732 5.732 9 C 0.537 3.463 10 O -0.513 6.513 11 C -0.266 4.266 12 C 0.026 3.974 13 C -0.189 4.189 14 C 0.013 3.987 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.375 0.625 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.544 -0.267 9.511 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.216 4.216 4 C 0.041 3.959 5 H 0.122 0.878 6 O -0.364 6.364 7 C -0.036 4.036 8 N -0.385 5.385 9 C 0.327 3.673 10 O -0.390 6.390 11 C -0.287 4.287 12 C 0.007 3.993 13 C -0.190 4.190 14 C -0.006 4.006 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.112 0.888 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.127 -0.453 8.563 21.877 hybrid contribution 0.626 0.889 0.365 1.147 sum -19.501 0.436 8.928 21.452 Atomic orbital electron populations 1.21743 0.94225 1.01931 1.02021 1.21735 0.97002 0.97259 0.98572 1.21953 1.01810 0.95571 1.02265 1.22204 0.91513 0.96992 0.85158 0.87835 1.86552 1.76848 1.29403 1.43617 1.22046 0.93884 0.96989 0.90713 1.45882 1.07381 1.54487 1.30797 1.18519 0.81638 0.81716 0.85417 1.90998 1.53959 1.47854 1.46150 1.22600 0.96780 1.07886 1.01448 1.22332 0.92390 0.88962 0.95653 1.18293 0.96086 1.11855 0.92729 1.20436 0.95088 0.94120 0.90939 1.20000 0.93996 1.09262 0.98967 1.19523 0.89524 0.91494 0.87819 1.83907 1.29637 1.63054 1.30999 1.21444 0.97362 1.32845 0.94871 0.88846 1.25326 0.99360 0.97449 0.94467 1.70032 1.37105 1.43245 0.99118 0.85632 0.79903 0.78918 0.78901 1.19039 1.20122 1.20116 1.20952 1.02340 1.11259 0.92435 1.20743 0.92109 0.95680 0.97503 0.91998 0.92684 0.92727 0.89939 0.92005 0.92510 0.91724 0.77666 0.90745 0.91133 0.76770 0.86157 0.86087 0.88144 0.86881 0.92025 0.85652 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.05 37.16 0.34 -0.58 16 2 C -0.13 -0.88 2.81 -90.62 -0.25 -1.13 16 3 C -0.16 -1.09 8.53 37.16 0.32 -0.78 16 4 C 0.10 0.77 2.80 -26.73 -0.07 0.69 16 5 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 6 O -0.56 -4.42 12.57 -35.23 -0.44 -4.86 16 7 C 0.09 0.91 4.81 -4.04 -0.02 0.89 16 8 N -0.73 -8.16 5.50 -61.75 -0.34 -8.50 16 9 C 0.54 8.01 6.78 -13.04 -0.09 7.92 16 10 O -0.51 -10.06 12.17 5.17 0.06 -9.99 16 11 C -0.27 -3.43 9.90 -37.50 -0.37 -3.80 16 12 C 0.03 0.37 9.80 -37.20 -0.36 0.01 16 13 C -0.19 -3.53 4.54 -105.03 -0.48 -4.01 16 14 C 0.01 0.26 6.59 -39.14 -0.26 0.00 16 15 C -0.20 -4.71 9.97 -39.47 -0.39 -5.10 16 16 C 0.17 4.39 6.66 -38.89 -0.26 4.14 16 17 O -0.17 -5.14 9.74 0.73 0.01 -5.13 16 18 C -0.39 -11.16 9.48 30.91 0.29 -10.86 16 19 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 22 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 C -0.25 -5.78 9.14 -39.47 -0.36 -6.14 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 28 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.33 6.78 -51.93 -0.35 -0.02 16 34 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 35 H 0.37 2.26 7.33 45.56 0.33 2.59 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 38 H 0.40 3.50 8.45 -40.82 -0.34 3.16 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.10 1.85 7.02 -52.49 -0.37 1.48 16 42 H 0.11 2.56 8.06 -52.48 -0.42 2.13 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 2.86 5.62 -52.48 -0.29 2.57 16 45 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -34.24 371.39 -7.58 -41.83 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.75 Total: 9.08 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.45 Total: -18.98 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.42 Total: -33.37 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.37 Total: -19.98 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.24 -7.58 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492113191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.653 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds