Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 O 1.42905 * 109.47070 * 239.99990 * 2 1 3 5 5 C 1.53000 * 109.46771 * 120.00032 * 2 1 3 6 6 C 1.53008 * 109.46969 * 60.00326 * 5 2 1 7 7 N 1.46498 * 109.46632 * 179.97438 * 6 5 2 8 8 C 1.34785 * 119.99521 * 179.97438 * 7 6 5 9 9 O 1.21715 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.46255 * 119.99650 * 180.27579 * 8 7 6 11 11 C 1.35025 * 119.99918 * 172.93880 * 10 8 7 12 12 C 1.46960 * 119.99925 * 348.68186 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.40557 * 12 11 10 14 14 C 1.37594 * 119.89934 * 179.76739 * 13 12 11 15 15 C 1.39184 * 120.09927 * 0.50673 * 14 13 12 16 16 O 1.35570 * 119.89843 * 179.76454 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33946 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31504 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47291 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46914 * 120.00744 * 21 19 17 24 24 H 1.48506 * 109.46956 * 240.00440 * 21 19 17 25 25 C 1.39177 * 120.19984 * 359.74795 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.46929 * 299.99853 * 1 2 3 28 28 H 1.09007 * 109.47180 * 59.99651 * 1 2 3 29 29 H 1.08995 * 109.47501 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46965 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47434 * 299.99907 * 3 2 1 32 32 H 1.09004 * 109.47004 * 60.00193 * 3 2 1 33 33 H 0.96696 * 114.00004 * 179.97438 * 4 2 1 34 34 H 1.08992 * 109.47168 * 300.00000 * 5 2 1 35 35 H 1.09003 * 109.46680 * 179.97438 * 5 2 1 36 36 H 1.08992 * 109.47442 * 59.99841 * 6 5 2 37 37 H 1.09003 * 109.46758 * 299.99142 * 6 5 2 38 38 H 0.96995 * 120.00513 * 359.97438 * 7 6 5 39 39 H 1.08005 * 120.00497 * 352.93596 * 10 8 7 40 40 H 1.08000 * 120.00300 * 168.68630 * 11 10 8 41 41 H 1.08007 * 120.05004 * 0.02562 * 13 12 11 42 42 H 1.07995 * 119.95777 * 180.23340 * 14 13 12 43 43 H 0.96998 * 119.99874 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.94407 * 179.97438 * 25 15 14 45 45 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2493 6 6 1.5299 -2.1638 1.2492 7 7 2.0187 -2.8546 2.4450 8 6 1.6927 -4.1449 2.6585 9 8 0.9919 -4.7360 1.8579 10 6 2.1757 -4.8327 3.8554 11 6 1.7357 -6.0764 4.1432 12 6 0.5970 -6.6419 3.4059 13 6 -0.5341 -5.8569 3.1510 14 6 -1.5959 -6.3891 2.4562 15 6 -1.5510 -7.7087 2.0161 16 8 -2.6014 -8.2303 1.3361 17 6 -2.4503 -9.4728 0.8359 18 1 -1.5560 -10.0376 1.0540 19 6 -3.4436 -10.0260 0.0410 20 7 -4.5323 -9.3381 -0.2249 21 14 -3.2344 -11.7482 -0.6516 22 1 -1.9314 -12.3052 -0.2080 23 1 -4.3356 -12.6157 -0.1619 24 1 -3.2703 -11.6928 -2.1352 25 6 -0.4310 -8.4943 2.2718 26 6 0.6378 -7.9688 2.9609 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 2.9703 -0.7115 -1.2331 34 1 1.6766 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8932 -2.6776 0.3593 37 1 0.4399 -2.1638 1.2492 38 1 2.5768 -2.3834 3.0832 39 1 2.8844 -4.3460 4.5091 40 1 2.2204 -6.6556 4.9151 41 1 -0.5715 -4.8340 3.4956 42 1 -2.4672 -5.7833 2.2558 43 1 -5.2266 -9.7248 -0.7810 44 1 -0.4008 -9.5179 1.9288 45 1 1.5067 -8.5791 3.1585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492705629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = -98.492089 kcal Electronic energy + Delta-G solvation = -26046.280021 eV Core-core repulsion = 22221.944790 eV Total energy + Delta-G solvation = -3824.335231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12169 -40.44008 -39.49268 -38.18251 -35.91960 -34.59205 -33.94638 -33.59013 -31.82721 -30.62362 -29.25456 -28.31207 -27.42890 -25.25070 -23.71921 -23.35966 -22.29103 -21.34335 -20.46010 -19.76552 -18.89097 -18.14178 -17.23950 -17.07777 -16.69298 -16.38540 -16.27280 -15.90944 -15.77716 -15.53774 -15.24836 -15.13738 -14.61225 -14.54702 -14.36067 -14.11611 -13.78865 -13.65103 -13.55740 -13.21874 -13.07283 -12.99162 -12.72963 -12.66087 -12.47193 -12.35532 -12.23627 -12.20687 -12.09639 -11.56900 -11.24276 -11.05257 -10.89919 -10.61162 -10.38849 -10.00533 -9.56650 -8.55699 -8.49112 -6.16528 -0.00033 0.70942 1.12565 1.32722 1.44264 1.52411 2.16471 2.36810 2.50212 2.86479 3.19942 3.34115 3.52103 3.76870 3.84085 3.99789 4.02908 4.09004 4.15681 4.18104 4.24716 4.36647 4.54044 4.60063 4.63771 4.72281 4.76735 4.85148 4.88706 5.00061 5.01195 5.05675 5.09554 5.14793 5.26089 5.27162 5.29500 5.35574 5.46897 5.56634 5.67682 5.72056 5.85105 6.01949 6.24833 6.75311 6.90518 6.94677 7.48686 7.77038 8.74383 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.002736 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.077717 B =10231.107972 C =11647.274853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 C -0.170 4.170 4 O -0.583 6.583 5 C -0.141 4.141 6 C 0.123 3.877 7 N -0.715 5.715 8 C 0.521 3.479 9 O -0.571 6.571 10 C -0.229 4.229 11 C 0.003 3.997 12 C -0.160 4.160 13 C 0.014 3.986 14 C -0.222 4.222 15 C 0.126 3.874 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.103 0.897 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.023 2.977 22 H -0.250 1.250 23 H -0.264 1.264 24 H -0.269 1.269 25 C -0.259 4.259 26 C -0.048 4.048 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.389 0.611 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.416 0.584 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.709 19.462 8.973 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.085 3.915 3 C -0.227 4.227 4 O -0.391 6.391 5 C -0.179 4.179 6 C -0.001 4.001 7 N -0.368 5.368 8 C 0.311 3.689 9 O -0.452 6.452 10 C -0.249 4.249 11 C -0.016 4.016 12 C -0.161 4.161 13 C -0.004 4.004 14 C -0.242 4.242 15 C 0.075 3.925 16 O -0.138 6.138 17 C -0.491 4.491 18 H 0.120 0.880 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.842 3.158 22 H -0.173 1.173 23 H -0.189 1.189 24 H -0.194 1.194 25 C -0.278 4.278 26 C -0.066 4.066 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.194 0.806 40 H 0.188 0.812 41 H 0.136 0.864 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 19.169 19.096 8.125 28.252 hybrid contribution 0.047 -0.439 -0.555 0.709 sum 19.216 18.657 7.570 27.833 Atomic orbital electron populations 1.21918 0.93911 1.01911 1.03123 1.21231 0.94333 0.91820 0.84109 1.22409 1.02326 0.94704 1.03279 1.86606 1.28065 1.79886 1.44586 1.22410 1.02687 0.93000 0.99812 1.21197 0.98286 0.93199 0.87388 1.45839 1.53986 1.11421 1.25599 1.19210 0.79796 0.82089 0.87799 1.91015 1.38661 1.66374 1.49139 1.23085 1.06789 0.97007 0.98058 1.22589 0.90128 0.93937 0.94947 1.18897 0.96164 0.94148 1.06893 1.20663 0.90857 0.96697 0.92182 1.20183 1.01866 0.93250 1.08886 1.20010 0.87824 0.93300 0.91327 1.83875 1.35165 1.32446 1.62314 1.21936 1.06924 0.89397 1.30827 0.87998 1.26697 0.94138 1.05115 0.96299 1.70184 1.08509 1.39935 1.37353 0.84481 0.79526 0.73899 0.77942 1.17335 1.18925 1.19366 1.21094 0.96085 1.01092 1.09560 1.21195 0.96634 0.94377 0.94423 0.89272 0.92368 0.93953 0.90709 0.92384 0.90173 0.76183 0.88381 0.88703 0.93802 0.93841 0.74657 0.80559 0.81220 0.86389 0.88253 0.91756 0.86214 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.49 71.98 0.61 -2.09 16 2 C 0.13 1.78 1.09 -10.79 -0.01 1.77 16 3 C -0.17 -1.51 8.81 71.98 0.63 -0.87 16 4 O -0.58 -10.80 12.31 -148.98 -1.83 -12.63 16 5 C -0.14 -1.60 4.57 30.60 0.14 -1.46 16 6 C 0.12 2.61 5.18 86.38 0.45 3.06 16 7 N -0.72 -13.35 5.55 -467.49 -2.60 -15.94 16 8 C 0.52 14.07 6.77 86.32 0.58 14.65 16 9 O -0.57 -22.77 12.17 -4.40 -0.05 -22.82 16 10 C -0.23 -4.44 9.90 23.62 0.23 -4.20 16 11 C 0.00 0.07 9.80 23.82 0.23 0.31 16 12 C -0.16 -5.69 4.54 -20.13 -0.09 -5.78 16 13 C 0.01 0.59 6.59 22.55 0.15 0.74 16 14 C -0.22 -11.21 9.97 22.35 0.22 -10.99 16 15 C 0.13 7.06 6.66 22.72 0.15 7.21 16 16 O -0.23 -15.17 9.74 -20.28 -0.20 -15.37 16 17 C -0.41 -25.79 9.48 67.94 0.64 -25.15 16 18 H 0.10 5.83 5.18 -2.91 -0.02 5.82 16 19 C -0.03 -1.52 5.49 84.86 0.47 -1.05 16 20 N -0.92 -59.44 13.67 21.62 0.30 -59.14 16 21 Si 1.02 45.03 29.55 68.60 2.03 47.06 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 C -0.26 -12.52 9.14 22.34 0.20 -12.32 16 26 C -0.05 -1.85 9.78 22.55 0.22 -1.63 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.04 0.99 6.43 -2.39 -0.02 0.98 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.39 4.05 9.05 -74.06 -0.67 3.38 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.04 1.19 7.68 -2.39 -0.02 1.17 16 37 H 0.04 1.17 6.43 -2.39 -0.02 1.15 16 38 H 0.42 4.02 8.45 -92.71 -0.78 3.24 16 39 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.12 4.33 7.02 -2.91 -0.02 4.31 16 42 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.12 5.78 5.62 -2.91 -0.02 5.76 16 45 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -89.62 373.99 2.05 -87.57 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.43 Total: 29.08 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.84 Total: -37.81 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -2.30 Total: -75.09 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -2.08 Total: -50.82 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -89.62 2.05 -87.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492705629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.920 kcal (2) G-P(sol) polarization free energy of solvation -89.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds